Wall clock time and date at job start Mon Mar 30 2020 02:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86798 * 120.00142 * 2 1 4 4 H 1.48505 * 109.47170 * 270.00374 * 3 2 1 5 5 H 1.48503 * 109.47267 * 30.00236 * 3 2 1 6 6 H 1.48495 * 109.47152 * 150.00312 * 3 2 1 7 7 C 1.38950 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00569 * 203.44202 * 7 2 1 9 9 N 1.37102 * 119.99463 * 23.44376 * 7 2 1 10 10 C 1.34773 * 120.00162 * 43.58451 * 9 7 2 11 11 O 1.21289 * 120.00367 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99897 * 179.97438 * 10 9 7 13 13 H 1.08999 * 115.55682 * 34.28310 * 12 10 9 14 14 C 1.53082 * 117.51249 * 248.49900 * 12 10 9 15 15 C 1.52558 * 117.50662 * 179.97438 * 12 10 9 16 16 C 1.53868 * 120.82687 * 357.25018 * 15 12 10 17 17 C 1.54984 * 104.06450 * 192.36626 * 16 15 12 18 18 C 1.54925 * 102.81957 * 37.56688 * 17 16 15 19 19 C 1.53488 * 121.08543 * 217.88135 * 15 12 10 20 20 C 1.46500 * 119.99778 * 223.57708 * 9 7 2 21 21 C 1.54265 * 110.03308 * 62.56740 * 20 9 7 22 22 C 1.54890 * 104.19820 * 217.10412 * 21 20 9 23 23 C 1.54889 * 102.74551 * 37.94295 * 22 21 20 24 24 C 1.53878 * 110.03583 * 305.39811 * 20 9 7 25 25 H 0.96992 * 119.99874 * 185.70854 * 1 2 3 26 26 H 1.09005 * 117.51212 * 359.97438 * 14 12 10 27 27 H 1.09000 * 117.51724 * 145.08876 * 14 12 10 28 28 H 1.08999 * 110.51016 * 311.01116 * 16 15 12 29 29 H 1.09004 * 110.50767 * 73.72482 * 16 15 12 30 30 H 1.09006 * 110.74433 * 279.23455 * 17 16 15 31 31 H 1.09000 * 110.89913 * 155.96826 * 17 16 15 32 32 H 1.09001 * 110.48244 * 203.59414 * 18 17 16 33 33 H 1.08998 * 110.47919 * 80.96744 * 18 17 16 34 34 H 1.08992 * 110.07276 * 263.30679 * 19 15 12 35 35 H 1.09003 * 110.06499 * 24.78268 * 19 15 12 36 36 H 1.09000 * 110.01908 * 184.00608 * 20 9 7 37 37 H 1.09001 * 110.48419 * 335.78410 * 21 20 9 38 38 H 1.09001 * 110.48761 * 98.42410 * 21 20 9 39 39 H 1.08995 * 110.75433 * 279.62383 * 22 21 20 40 40 H 1.09000 * 110.75629 * 156.25304 * 22 21 20 41 41 H 1.09005 * 110.48207 * 203.38274 * 23 22 21 42 42 H 1.08993 * 110.49084 * 80.73661 * 23 22 21 43 43 H 1.08998 * 110.03362 * 238.57092 * 24 20 9 44 44 H 1.09000 * 110.03009 * 359.95674 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4457 2.6527 0.7001 6 1 3.5457 1.4401 0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 3.0220 -1.2422 0.3715 9 7 1.4082 -2.3414 -0.4735 10 6 0.6883 -2.3001 -1.6120 11 8 0.5713 -1.2560 -2.2181 12 6 0.0285 -3.5512 -2.1321 13 1 -0.3369 -4.2411 -1.3715 14 6 0.5762 -4.1528 -3.4289 15 6 -0.7731 -3.4396 -3.4253 16 6 -0.9492 -2.0828 -4.1293 17 6 -2.0583 -2.3446 -5.1797 18 6 -3.0185 -3.3046 -4.4337 19 6 -2.0811 -4.2196 -3.6167 20 6 1.5491 -3.6024 0.2588 21 6 0.9175 -3.4731 1.6603 22 6 1.8577 -4.2935 2.5779 23 6 3.2599 -3.9764 2.0015 24 6 3.0385 -3.9225 0.4757 25 1 -0.4849 -0.8358 0.0836 26 1 1.4134 -3.6433 -3.9060 27 1 0.5714 -5.2388 -3.5216 28 1 -1.2692 -1.3219 -3.4174 29 1 -0.0224 -1.7835 -4.6189 30 1 -1.6445 -2.8246 -6.0666 31 1 -2.5680 -1.4186 -5.4459 32 1 -3.5996 -3.8916 -5.1450 33 1 -3.6783 -2.7449 -3.7708 34 1 -1.8896 -5.1428 -4.1635 35 1 -2.5275 -4.4446 -2.6481 36 1 1.0702 -4.4105 -0.2941 37 1 0.8943 -2.4292 1.9734 38 1 -0.0868 -3.8966 1.6667 39 1 1.6400 -5.3587 2.5005 40 1 1.7797 -3.9562 3.6115 41 1 3.9651 -4.7674 2.2568 42 1 3.6151 -3.0139 2.3696 43 1 3.2822 -4.8863 0.0287 44 1 3.6565 -3.1400 0.0355 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075091891.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:49 Heat of formation + Delta-G solvation = -39.293204 kcal Electronic energy + Delta-G solvation = -23112.710207 eV Core-core repulsion = 20029.221079 eV Total energy + Delta-G solvation = -3083.489128 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.27339 -39.63440 -38.12945 -35.44688 -34.91630 -33.23841 -29.59193 -29.55541 -28.35720 -27.47292 -26.09463 -24.25947 -21.59154 -21.51822 -21.51122 -21.09472 -19.57796 -18.41689 -17.99462 -16.77300 -16.38133 -15.99874 -15.86514 -15.66252 -15.53610 -15.29545 -14.57018 -14.24337 -14.21242 -13.91074 -13.35200 -13.25692 -13.00842 -12.75111 -12.62111 -12.38390 -11.99248 -11.98424 -11.97555 -11.92540 -11.88968 -11.87305 -11.74913 -11.46362 -11.43071 -11.29539 -11.11573 -10.68925 -10.51407 -9.85859 -9.33264 -8.49702 -5.95889 1.46089 1.57479 1.71114 2.07115 2.49053 2.89852 2.99699 3.31383 3.54299 3.71804 3.80187 3.82318 3.94715 4.03742 4.07873 4.27532 4.31893 4.34973 4.54328 4.59835 4.60434 4.72544 4.73194 4.76003 4.77450 4.86565 4.88163 4.90497 5.02210 5.04705 5.08254 5.11142 5.11797 5.20679 5.22176 5.36983 5.38407 5.45930 5.48740 5.55823 5.56905 5.86745 6.25252 6.97144 7.27208 7.63947 8.27658 8.77436 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014747 B = 0.007476 C = 0.005533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.211938 B = 3744.621965 C = 5059.023044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C -0.008 4.008 3 Si 1.110 2.890 4 H -0.296 1.296 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.420 4.420 8 H 0.064 0.936 9 N -0.463 5.463 10 C 0.471 3.529 11 O -0.584 6.584 12 C -0.185 4.185 13 H 0.122 0.878 14 C -0.124 4.124 15 C -0.103 4.103 16 C -0.072 4.072 17 C -0.120 4.120 18 C -0.117 4.117 19 C -0.080 4.080 20 C 0.120 3.880 21 C -0.128 4.128 22 C -0.108 4.108 23 C -0.113 4.113 24 C -0.124 4.124 25 H 0.253 0.747 26 H 0.075 0.925 27 H 0.136 0.864 28 H 0.035 0.965 29 H 0.036 0.964 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.039 0.961 38 H 0.058 0.942 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.082 0.918 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.690 -14.020 -2.652 14.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.214 4.214 3 Si 0.934 3.066 4 H -0.223 1.223 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.547 4.547 8 H 0.082 0.918 9 N -0.184 5.184 10 C 0.261 3.739 11 O -0.467 6.467 12 C -0.206 4.206 13 H 0.140 0.860 14 C -0.162 4.162 15 C -0.103 4.103 16 C -0.110 4.110 17 C -0.157 4.157 18 C -0.154 4.154 19 C -0.118 4.118 20 C 0.016 3.984 21 C -0.167 4.167 22 C -0.145 4.145 23 C -0.150 4.150 24 C -0.163 4.163 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.154 0.846 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.063 0.937 43 H 0.100 0.900 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.927 -11.870 -2.993 12.277 hybrid contribution 0.261 -0.854 0.348 0.958 sum -0.666 -12.724 -2.645 13.013 Atomic orbital electron populations 1.70648 1.08423 1.29786 1.42520 1.27217 0.96082 1.05244 0.92869 0.83000 0.74891 0.72215 0.76540 1.22309 1.21026 1.18446 1.19812 0.98538 0.88306 1.48041 0.91815 1.43772 1.47215 1.08241 1.19215 1.20246 0.83024 0.89358 0.81309 1.90551 1.63204 1.33702 1.59209 1.22261 1.06735 0.98626 0.93006 0.86039 1.23015 0.95984 1.00888 0.96262 1.21872 0.93833 0.97632 0.97000 1.21640 0.97987 0.94791 0.96579 1.22535 0.95958 0.99620 0.97599 1.22332 0.97072 0.97304 0.98737 1.21676 0.91355 0.98150 1.00582 1.22075 0.96628 0.86791 0.92888 1.22616 0.98650 0.99845 0.95594 1.22391 0.93909 1.00091 0.98156 1.22246 0.97642 1.01085 0.94069 1.22369 0.95367 1.00951 0.97564 0.93738 0.90613 0.84622 0.94669 0.94538 0.90049 0.91935 0.88733 0.92818 0.88689 0.91696 0.89262 0.94214 0.92297 0.89234 0.91304 0.89373 0.93661 0.89954 0.93829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -56.30 12.38 21.66 0.27 -56.03 16 2 C -0.01 -0.48 4.20 84.93 0.36 -0.12 16 3 Si 1.11 54.49 29.98 68.60 2.06 56.55 16 4 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 5 H -0.28 -13.67 7.11 99.48 0.71 -12.97 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 7 C -0.42 -23.76 7.48 84.04 0.63 -23.13 16 8 H 0.06 3.59 6.93 -2.91 -0.02 3.57 16 9 N -0.46 -23.40 2.21 -609.38 -1.35 -24.74 16 10 C 0.47 24.38 6.23 87.66 0.55 24.92 16 11 O -0.58 -35.60 11.59 -3.06 -0.04 -35.63 16 12 C -0.19 -7.18 4.84 -11.66 -0.06 -7.24 16 13 H 0.12 4.20 6.72 -2.39 -0.02 4.18 16 14 C -0.12 -3.90 9.94 30.49 0.30 -3.60 16 15 C -0.10 -3.52 2.45 -52.00 -0.13 -3.65 16 16 C -0.07 -2.87 4.77 31.57 0.15 -2.72 16 17 C -0.12 -3.43 6.91 31.93 0.22 -3.21 16 18 C -0.12 -2.87 6.84 31.72 0.22 -2.65 16 19 C -0.08 -2.05 6.55 31.23 0.20 -1.85 16 20 C 0.12 4.67 3.17 45.72 0.14 4.82 16 21 C -0.13 -4.78 6.42 31.67 0.20 -4.58 16 22 C -0.11 -2.99 6.91 31.89 0.22 -2.77 16 23 C -0.11 -3.28 6.83 31.67 0.22 -3.07 16 24 C -0.12 -4.22 6.19 31.32 0.19 -4.03 16 25 H 0.25 16.54 7.44 -92.71 -0.69 15.85 16 26 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 27 H 0.14 3.07 8.14 -2.39 -0.02 3.05 16 28 H 0.03 1.74 6.97 -2.39 -0.02 1.72 16 29 H 0.04 1.57 8.00 -2.38 -0.02 1.55 16 30 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.09 3.07 5.55 -2.39 -0.01 3.06 16 37 H 0.04 1.85 7.22 -2.39 -0.02 1.83 16 38 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 42 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.04 1.76 6.65 -2.39 -0.02 1.74 16 Total: -1.00 -75.01 336.69 5.40 -69.61 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 1.04 Total: 23.11 kcal Atomic # 6 Polarization: -36.29 SS G_CDS: 3.42 Total: -32.86 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -1.08 Total: -80.78 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -0.04 Total: -35.63 kcal Atomic # 14 Polarization: 54.49 SS G_CDS: 2.06 Total: 56.55 kcal Total: -75.01 5.40 -69.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075091891.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.318 kcal (2) G-P(sol) polarization free energy of solvation -75.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds