Wall clock time and date at job start Mon Mar 30 2020 02:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86802 * 119.99892 * 2 1 4 4 H 1.48498 * 109.47078 * 240.00027 * 3 2 1 5 5 H 1.48501 * 109.47129 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47100 * 120.00060 * 3 2 1 7 7 C 1.38953 * 120.00397 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00049 * 197.83368 * 7 2 1 9 9 N 1.37094 * 119.99460 * 17.83790 * 7 2 1 10 10 C 1.34774 * 120.00283 * 44.42054 * 9 7 2 11 11 O 1.21289 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00341 * 179.97438 * 10 9 7 13 13 H 1.09003 * 115.57031 * 39.71359 * 12 10 9 14 14 C 1.53082 * 117.51590 * 185.46815 * 12 10 9 15 15 C 1.52557 * 59.94152 * 107.47548 * 14 12 10 16 16 C 1.53873 * 120.82012 * 249.77640 * 15 14 12 17 17 C 1.54996 * 104.05716 * 192.35945 * 16 15 14 18 18 C 1.54922 * 102.82121 * 37.57248 * 17 16 15 19 19 C 1.53477 * 121.08741 * 110.40927 * 15 14 12 20 20 C 1.46501 * 119.99729 * 224.41905 * 9 7 2 21 21 C 1.54272 * 110.03030 * 57.33712 * 20 9 7 22 22 C 1.54893 * 104.19084 * 217.10259 * 21 20 9 23 23 C 1.54895 * 102.74710 * 37.94096 * 22 21 20 24 24 C 1.53865 * 110.03511 * 300.16482 * 20 9 7 25 25 H 0.97004 * 120.00110 * 4.71547 * 1 2 3 26 26 H 1.09004 * 117.50666 * 359.97438 * 14 12 10 27 27 H 1.08998 * 117.51311 * 214.95555 * 14 12 10 28 28 H 1.08989 * 110.51451 * 311.00186 * 16 15 14 29 29 H 1.09000 * 110.51007 * 73.71967 * 16 15 14 30 30 H 1.08992 * 110.74402 * 279.23503 * 17 16 15 31 31 H 1.08999 * 110.74068 * 155.90321 * 17 16 15 32 32 H 1.09002 * 110.47924 * 203.59331 * 18 17 16 33 33 H 1.08998 * 110.59624 * 81.01189 * 18 17 16 34 34 H 1.08997 * 110.06940 * 263.30859 * 19 15 14 35 35 H 1.09000 * 110.07130 * 24.84147 * 19 15 14 36 36 H 1.09005 * 110.01792 * 178.77072 * 20 9 7 37 37 H 1.08999 * 110.48534 * 335.77721 * 21 20 9 38 38 H 1.08996 * 110.48804 * 98.42588 * 21 20 9 39 39 H 1.08994 * 110.75551 * 279.62687 * 22 21 20 40 40 H 1.09003 * 110.75423 * 156.25435 * 22 21 20 41 41 H 1.09009 * 110.47988 * 203.37603 * 23 22 21 42 42 H 1.09005 * 110.48788 * 80.73711 * 23 22 21 43 43 H 1.08998 * 110.03524 * 238.56826 * 24 20 9 44 44 H 1.09004 * 110.03555 * 0.02562 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0500 -1.2256 0.2870 9 7 1.3729 -2.3622 -0.3627 10 6 0.5723 -2.3803 -1.4467 11 8 0.4142 -1.3712 -2.1008 12 6 -0.1264 -3.6544 -1.8463 13 1 -0.5190 -4.2533 -1.0245 14 6 -0.9184 -3.6457 -3.1563 15 6 0.4060 -4.3978 -3.0691 16 6 1.6508 -3.8919 -3.8189 17 6 2.6482 -5.0753 -3.7340 18 6 1.7277 -6.3122 -3.8847 19 6 0.4502 -5.9315 -3.1057 20 6 1.5634 -3.5809 0.4277 21 6 1.1569 -3.3286 1.8943 22 6 2.1854 -4.1421 2.7188 23 6 3.4980 -3.9417 1.9212 24 6 3.0517 -3.9708 0.4448 25 1 -0.4850 0.8372 -0.0691 26 1 -0.9343 -2.7182 -3.7288 27 1 -1.8324 -4.2383 -3.1961 28 1 1.4073 -3.6715 -4.8581 29 1 2.0612 -3.0104 -3.3264 30 1 3.1537 -5.0855 -2.7684 31 1 3.3708 -5.0302 -4.5488 32 1 2.1958 -7.1920 -3.4430 33 1 1.4951 -6.4915 -4.9343 34 1 0.4981 -6.3287 -2.0918 35 1 -0.4300 -6.3190 -3.6186 36 1 0.9693 -4.3936 0.0094 37 1 1.2301 -2.2676 2.1333 38 1 0.1464 -3.6933 2.0783 39 1 1.9090 -5.1960 2.7493 40 1 2.2799 -3.7370 3.7263 41 1 4.1958 -4.7540 2.1250 42 1 3.9492 -2.9797 2.1645 43 1 3.1800 -4.9729 0.0357 44 1 3.6325 -3.2530 -0.1345 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075091892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:51 Heat of formation + Delta-G solvation = -21.390611 kcal Electronic energy + Delta-G solvation = -23392.891052 eV Core-core repulsion = 20310.178238 eV Total energy + Delta-G solvation = -3082.712814 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.51732 -37.96959 -36.38227 -33.75070 -32.97409 -31.35546 -28.44158 -28.00048 -26.79892 -25.75925 -24.79546 -22.43724 -20.56389 -20.03580 -19.68534 -19.08352 -18.03842 -16.30276 -15.87874 -15.34066 -15.03591 -14.75478 -14.57174 -14.10065 -13.49578 -13.11504 -12.87217 -12.84887 -12.60490 -12.38702 -11.98358 -11.41357 -11.28922 -10.94658 -10.93186 -10.88787 -10.71109 -10.61141 -10.56636 -10.50135 -10.44640 -10.40394 -10.31497 -10.17333 -9.99622 -9.74800 -9.49225 -9.14929 -8.60973 -7.92036 -6.98312 -5.99873 -3.77160 3.35668 3.42631 3.46015 3.89847 4.37376 4.62975 4.75897 4.98679 5.03588 5.22923 5.26195 5.29943 5.33853 5.44138 5.56049 5.58885 5.73508 5.74263 5.87548 5.98375 6.02938 6.06905 6.10703 6.17730 6.18933 6.21457 6.26982 6.28922 6.34943 6.39203 6.39411 6.48678 6.50108 6.55324 6.61302 6.68151 6.73363 6.82970 6.88278 7.03491 7.27880 7.72939 8.40048 9.19381 9.31087 9.79213 10.45168 11.07248 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014689 B = 0.008070 C = 0.006293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.721745 B = 3468.626837 C = 4448.629577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.072 3.928 3 Si 0.902 3.098 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.336 4.336 8 H 0.075 0.925 9 N -0.445 5.445 10 C 0.512 3.488 11 O -0.536 6.536 12 C -0.158 4.158 13 H 0.103 0.897 14 C -0.146 4.146 15 C -0.111 4.111 16 C -0.089 4.089 17 C -0.121 4.121 18 C -0.120 4.120 19 C -0.087 4.087 20 C 0.133 3.867 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.128 4.128 25 H 0.262 0.738 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.842 -12.404 -1.559 12.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.138 4.138 3 Si 0.729 3.271 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.463 4.463 8 H 0.093 0.907 9 N -0.166 5.166 10 C 0.299 3.701 11 O -0.415 6.415 12 C -0.180 4.180 13 H 0.121 0.879 14 C -0.183 4.183 15 C -0.112 4.112 16 C -0.126 4.126 17 C -0.158 4.158 18 C -0.158 4.158 19 C -0.125 4.125 20 C 0.027 3.973 21 C -0.165 4.165 22 C -0.161 4.161 23 C -0.155 4.155 24 C -0.167 4.167 25 H 0.072 0.928 26 H 0.120 0.880 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.584 -11.744 -1.834 12.164 hybrid contribution 0.169 0.774 0.185 0.813 sum 2.753 -10.970 -1.649 11.430 Atomic orbital electron populations 1.69866 1.06362 1.27478 1.43004 1.25165 0.94681 0.99085 0.94845 0.86452 0.79453 0.82848 0.78335 1.20186 1.21385 1.20478 1.18752 0.93850 0.84268 1.49467 0.90710 1.43249 1.43873 1.07827 1.21652 1.18901 0.82608 0.87136 0.81461 1.90501 1.62987 1.34464 1.53505 1.22501 1.03982 0.99604 0.91897 0.87945 1.22873 0.93444 1.01947 1.00071 1.21691 0.95754 0.93208 1.00522 1.21853 0.93159 0.98261 0.99375 1.22459 0.97236 0.94654 1.01491 1.22324 0.95851 0.97796 0.99813 1.21650 0.97697 0.92977 1.00131 1.21680 0.94517 0.89099 0.91975 1.22659 0.96832 1.02267 0.94708 1.22441 0.96063 0.99186 0.98362 1.22269 0.96836 1.00819 0.95597 1.22440 0.97656 1.00211 0.96383 0.92765 0.87962 0.89402 0.91833 0.90465 0.91381 0.92059 0.92075 0.91984 0.91804 0.91951 0.91483 0.89093 0.93158 0.92590 0.92425 0.92998 0.91672 0.93047 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.77 11.73 55.50 0.65 -24.12 16 2 C 0.07 2.03 4.40 -17.47 -0.08 1.95 16 3 Si 0.90 22.09 29.59 -169.99 -5.03 17.06 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.34 -9.04 7.35 -14.93 -0.11 -9.15 16 8 H 0.08 1.96 7.21 -52.49 -0.38 1.58 16 9 N -0.44 -10.88 2.44 -106.54 -0.26 -11.14 16 10 C 0.51 12.91 5.30 -10.98 -0.06 12.85 16 11 O -0.54 -15.79 13.95 5.55 0.08 -15.71 16 12 C -0.16 -3.18 4.73 -91.89 -0.43 -3.61 16 13 H 0.10 1.93 6.91 -51.93 -0.36 1.58 16 14 C -0.15 -2.64 9.77 -26.92 -0.26 -2.90 16 15 C -0.11 -1.86 2.45 -154.20 -0.38 -2.24 16 16 C -0.09 -1.52 6.42 -25.22 -0.16 -1.68 16 17 C -0.12 -1.67 6.91 -24.66 -0.17 -1.84 16 18 C -0.12 -1.44 6.84 -24.99 -0.17 -1.61 16 19 C -0.09 -1.16 6.55 -25.75 -0.17 -1.33 16 20 C 0.13 2.63 3.20 -66.81 -0.21 2.41 16 21 C -0.13 -2.41 6.41 -25.07 -0.16 -2.57 16 22 C -0.12 -1.88 6.91 -24.73 -0.17 -2.05 16 23 C -0.12 -1.82 6.83 -25.07 -0.17 -1.99 16 24 C -0.13 -2.23 6.22 -25.62 -0.16 -2.39 16 25 H 0.26 7.61 8.32 -40.82 -0.34 7.27 16 26 H 0.10 2.06 7.68 -51.93 -0.40 1.66 16 27 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 28 H 0.06 1.02 8.14 -51.94 -0.42 0.60 16 29 H 0.08 1.61 6.74 -51.93 -0.35 1.26 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 1.25 5.59 -51.93 -0.29 0.96 16 37 H 0.09 2.06 7.01 -51.93 -0.36 1.70 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.07 1.43 6.99 -51.93 -0.36 1.07 16 LS Contribution 339.72 15.07 5.12 5.12 Total: -1.00 -31.15 339.72 -9.87 -41.01 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -7.56 Total: 3.93 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -2.87 Total: -16.15 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.39 Total: -35.26 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.08 Total: -15.71 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.15 -9.87 -41.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075091892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.622 kcal (2) G-P(sol) polarization free energy of solvation -31.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds