Wall clock time and date at job start Mon Mar 30 2020 02:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86802 * 119.99892 * 2 1 4 4 H 1.48498 * 109.47078 * 240.00027 * 3 2 1 5 5 H 1.48501 * 109.47129 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47100 * 120.00060 * 3 2 1 7 7 C 1.38953 * 120.00397 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00049 * 197.83368 * 7 2 1 9 9 N 1.37094 * 119.99460 * 17.83790 * 7 2 1 10 10 C 1.34774 * 120.00283 * 44.42054 * 9 7 2 11 11 O 1.21289 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00341 * 179.97438 * 10 9 7 13 13 H 1.09003 * 115.57031 * 39.71359 * 12 10 9 14 14 C 1.53082 * 117.51590 * 185.46815 * 12 10 9 15 15 C 1.52557 * 59.94152 * 107.47548 * 14 12 10 16 16 C 1.53873 * 120.82012 * 249.77640 * 15 14 12 17 17 C 1.54996 * 104.05716 * 192.35945 * 16 15 14 18 18 C 1.54922 * 102.82121 * 37.57248 * 17 16 15 19 19 C 1.53477 * 121.08741 * 110.40927 * 15 14 12 20 20 C 1.46501 * 119.99729 * 224.41905 * 9 7 2 21 21 C 1.54272 * 110.03030 * 57.33712 * 20 9 7 22 22 C 1.54893 * 104.19084 * 217.10259 * 21 20 9 23 23 C 1.54895 * 102.74710 * 37.94096 * 22 21 20 24 24 C 1.53865 * 110.03511 * 300.16482 * 20 9 7 25 25 H 0.97004 * 120.00110 * 4.71547 * 1 2 3 26 26 H 1.09004 * 117.50666 * 359.97438 * 14 12 10 27 27 H 1.08998 * 117.51311 * 214.95555 * 14 12 10 28 28 H 1.08989 * 110.51451 * 311.00186 * 16 15 14 29 29 H 1.09000 * 110.51007 * 73.71967 * 16 15 14 30 30 H 1.08992 * 110.74402 * 279.23503 * 17 16 15 31 31 H 1.08999 * 110.74068 * 155.90321 * 17 16 15 32 32 H 1.09002 * 110.47924 * 203.59331 * 18 17 16 33 33 H 1.08998 * 110.59624 * 81.01189 * 18 17 16 34 34 H 1.08997 * 110.06940 * 263.30859 * 19 15 14 35 35 H 1.09000 * 110.07130 * 24.84147 * 19 15 14 36 36 H 1.09005 * 110.01792 * 178.77072 * 20 9 7 37 37 H 1.08999 * 110.48534 * 335.77721 * 21 20 9 38 38 H 1.08996 * 110.48804 * 98.42588 * 21 20 9 39 39 H 1.08994 * 110.75551 * 279.62687 * 22 21 20 40 40 H 1.09003 * 110.75423 * 156.25435 * 22 21 20 41 41 H 1.09009 * 110.47988 * 203.37603 * 23 22 21 42 42 H 1.09005 * 110.48788 * 80.73711 * 23 22 21 43 43 H 1.08998 * 110.03524 * 238.56826 * 24 20 9 44 44 H 1.09004 * 110.03555 * 0.02562 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0500 -1.2256 0.2870 9 7 1.3729 -2.3622 -0.3627 10 6 0.5723 -2.3803 -1.4467 11 8 0.4142 -1.3712 -2.1008 12 6 -0.1264 -3.6544 -1.8463 13 1 -0.5190 -4.2533 -1.0245 14 6 -0.9184 -3.6457 -3.1563 15 6 0.4060 -4.3978 -3.0691 16 6 1.6508 -3.8919 -3.8189 17 6 2.6482 -5.0753 -3.7340 18 6 1.7277 -6.3122 -3.8847 19 6 0.4502 -5.9315 -3.1057 20 6 1.5634 -3.5809 0.4277 21 6 1.1569 -3.3286 1.8943 22 6 2.1854 -4.1421 2.7188 23 6 3.4980 -3.9417 1.9212 24 6 3.0517 -3.9708 0.4448 25 1 -0.4850 0.8372 -0.0691 26 1 -0.9343 -2.7182 -3.7288 27 1 -1.8324 -4.2383 -3.1961 28 1 1.4073 -3.6715 -4.8581 29 1 2.0612 -3.0104 -3.3264 30 1 3.1537 -5.0855 -2.7684 31 1 3.3708 -5.0302 -4.5488 32 1 2.1958 -7.1920 -3.4430 33 1 1.4951 -6.4915 -4.9343 34 1 0.4981 -6.3287 -2.0918 35 1 -0.4300 -6.3190 -3.6186 36 1 0.9693 -4.3936 0.0094 37 1 1.2301 -2.2676 2.1333 38 1 0.1464 -3.6933 2.0783 39 1 1.9090 -5.1960 2.7493 40 1 2.2799 -3.7370 3.7263 41 1 4.1958 -4.7540 2.1250 42 1 3.9492 -2.9797 2.1645 43 1 3.1800 -4.9729 0.0357 44 1 3.6325 -3.2530 -0.1345 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075091892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:51 Heat of formation + Delta-G solvation = -37.970418 kcal Electronic energy + Delta-G solvation = -23393.610006 eV Core-core repulsion = 20310.178238 eV Total energy + Delta-G solvation = -3083.431768 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.12549 -39.43437 -38.04755 -35.32788 -34.68476 -33.34247 -29.59824 -29.41729 -28.45339 -27.44055 -26.22947 -24.20587 -21.75925 -21.35577 -21.23259 -20.72447 -19.59248 -18.05171 -17.64609 -16.78142 -16.57922 -16.35841 -15.91704 -15.81812 -15.22190 -14.68732 -14.44655 -14.15677 -14.04382 -13.85092 -13.39065 -13.17654 -12.89899 -12.83029 -12.67030 -12.49684 -12.25866 -12.08183 -11.92850 -11.88586 -11.82503 -11.77181 -11.73817 -11.38261 -11.36941 -11.30733 -10.96442 -10.73282 -10.54083 -9.90442 -9.00680 -8.13800 -5.92540 1.33825 1.41201 1.44980 2.19868 2.40106 3.03358 3.10125 3.32767 3.62479 3.79755 3.88955 3.94625 4.00995 4.04807 4.16423 4.34146 4.40639 4.47882 4.60354 4.65457 4.71380 4.80332 4.84265 4.85436 4.88969 4.93671 4.95122 4.98155 5.08017 5.12524 5.15337 5.19599 5.20337 5.25234 5.30461 5.34372 5.45587 5.47707 5.55392 5.58359 5.60364 5.69808 6.28133 7.11656 7.31672 7.80182 8.47824 8.92619 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014689 B = 0.008070 C = 0.006293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.721745 B = 3468.626837 C = 4448.629577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.020 3.980 3 Si 0.956 3.044 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.257 1.257 7 C -0.336 4.336 8 H 0.074 0.926 9 N -0.456 5.456 10 C 0.500 3.500 11 O -0.594 6.594 12 C -0.180 4.180 13 H 0.118 0.882 14 C -0.147 4.147 15 C -0.087 4.087 16 C -0.097 4.097 17 C -0.116 4.116 18 C -0.111 4.111 19 C -0.083 4.083 20 C 0.125 3.875 21 C -0.128 4.128 22 C -0.109 4.109 23 C -0.113 4.113 24 C -0.122 4.122 25 H 0.254 0.746 26 H 0.070 0.930 27 H 0.122 0.878 28 H 0.068 0.932 29 H 0.027 0.973 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.045 0.955 38 H 0.053 0.947 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.046 0.954 43 H 0.081 0.919 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.817 -16.276 -1.309 16.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.185 4.185 3 Si 0.781 3.219 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.182 1.182 7 C -0.464 4.464 8 H 0.092 0.908 9 N -0.176 5.176 10 C 0.289 3.711 11 O -0.477 6.477 12 C -0.201 4.201 13 H 0.136 0.864 14 C -0.184 4.184 15 C -0.088 4.088 16 C -0.134 4.134 17 C -0.154 4.154 18 C -0.148 4.148 19 C -0.121 4.121 20 C 0.021 3.979 21 C -0.166 4.166 22 C -0.147 4.147 23 C -0.151 4.151 24 C -0.161 4.161 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.140 0.860 28 H 0.086 0.914 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.105 0.895 42 H 0.065 0.935 43 H 0.100 0.900 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.594 -15.648 -1.544 16.130 hybrid contribution -0.101 1.967 0.065 1.970 sum 3.493 -13.682 -1.479 14.198 Atomic orbital electron populations 1.69985 1.07739 1.27383 1.45640 1.25932 0.95340 1.02180 0.95063 0.85599 0.78328 0.79312 0.78631 1.21012 1.21630 1.18158 1.18945 0.93909 0.85573 1.48006 0.90822 1.43493 1.43335 1.08650 1.22166 1.19755 0.82154 0.88271 0.80891 1.90448 1.64955 1.36993 1.55265 1.22344 1.05993 0.98257 0.93551 0.86423 1.22925 0.95844 1.01613 0.98067 1.21877 0.94426 0.95707 0.96754 1.21890 0.94518 0.97964 0.99044 1.22442 0.97091 0.94060 1.01766 1.22323 0.94379 0.97259 1.00861 1.21732 0.99551 0.89249 1.01538 1.21979 0.96731 0.87476 0.91721 1.22594 0.98558 1.00276 0.95177 1.22403 0.94126 1.00168 0.97970 1.22261 0.97588 1.01311 0.93944 1.22379 0.95122 1.00859 0.97717 0.93694 0.91148 0.85987 0.91383 0.95451 0.92130 0.90548 0.89580 0.90444 0.90651 0.89707 0.89852 0.93567 0.92845 0.89507 0.91378 0.89461 0.93472 0.90019 0.93802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.80 11.73 21.66 0.25 -54.54 16 2 C 0.02 1.18 4.40 84.93 0.37 1.56 16 3 Si 0.96 47.37 29.59 68.60 2.03 49.40 16 4 H -0.28 -14.28 7.11 99.48 0.71 -13.57 16 5 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 6 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.34 -18.93 7.35 84.04 0.62 -18.31 16 8 H 0.07 4.04 7.21 -2.91 -0.02 4.02 16 9 N -0.46 -23.17 2.44 -609.38 -1.49 -24.65 16 10 C 0.50 26.40 5.30 87.66 0.46 26.86 16 11 O -0.59 -37.34 13.95 -3.06 -0.04 -37.38 16 12 C -0.18 -7.26 4.73 -11.62 -0.05 -7.32 16 13 H 0.12 4.31 6.91 -2.39 -0.02 4.29 16 14 C -0.15 -5.29 9.77 30.47 0.30 -4.99 16 15 C -0.09 -2.80 2.45 -51.98 -0.13 -2.92 16 16 C -0.10 -3.28 6.42 31.57 0.20 -3.08 16 17 C -0.12 -2.93 6.91 31.93 0.22 -2.71 16 18 C -0.11 -2.12 6.84 31.72 0.22 -1.91 16 19 C -0.08 -1.86 6.55 31.23 0.20 -1.65 16 20 C 0.12 4.90 3.20 45.71 0.15 5.05 16 21 C -0.13 -4.83 6.41 31.67 0.20 -4.63 16 22 C -0.11 -3.02 6.91 31.89 0.22 -2.80 16 23 C -0.11 -3.22 6.83 31.67 0.22 -3.00 16 24 C -0.12 -4.06 6.22 31.31 0.19 -3.87 16 25 H 0.25 15.66 8.32 -92.71 -0.77 14.89 16 26 H 0.07 2.98 7.68 -2.38 -0.02 2.96 16 27 H 0.12 3.48 8.14 -2.39 -0.02 3.46 16 28 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.03 1.19 6.74 -2.39 -0.02 1.17 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 2.97 5.59 -2.38 -0.01 2.95 16 37 H 0.05 2.16 7.01 -2.39 -0.02 2.15 16 38 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.09 1.93 8.14 -2.39 -0.02 1.92 16 40 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 42 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.04 1.71 6.99 -2.38 -0.02 1.69 16 Total: -1.00 -74.37 339.72 5.11 -69.26 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.96 Total: 21.62 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: 3.40 Total: -23.72 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -1.23 Total: -79.19 kcal Atomic # 8 Polarization: -37.34 SS G_CDS: -0.04 Total: -37.38 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -74.37 5.11 -69.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075091892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.292 kcal (2) G-P(sol) polarization free energy of solvation -74.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds