Wall clock time and date at job start Mon Mar 30 2020 01:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35677 * 117.00106 * 2 1 4 4 C 1.38920 * 119.68637 * 180.02562 * 3 2 1 5 5 C 1.38383 * 119.10824 * 179.77437 * 4 3 2 6 6 C 1.38824 * 118.48756 * 0.44721 * 5 4 3 7 7 C 1.50694 * 120.35647 * 179.80475 * 6 5 4 8 8 N 1.46898 * 109.47313 * 269.72307 * 7 6 5 9 9 C 1.46903 * 111.00133 * 169.99897 * 8 7 6 10 10 C 1.53230 * 109.33899 * 187.25239 * 9 8 7 11 11 N 1.47080 * 108.52531 * 306.16795 * 10 9 8 12 12 C 1.36931 * 120.88364 * 231.18821 * 11 10 9 13 13 H 1.07994 * 120.00368 * 26.84029 * 12 11 10 14 14 C 1.38812 * 119.99721 * 206.56279 * 12 11 10 15 15 N 1.31619 * 120.00606 * 17.47328 * 14 12 11 16 16 Si 1.86807 * 119.99780 * 197.47555 * 14 12 11 17 17 H 1.48504 * 109.46947 * 94.38387 * 16 14 12 18 18 H 1.48508 * 109.46899 * 214.38152 * 16 14 12 19 19 H 1.48495 * 109.47303 * 334.38014 * 16 14 12 20 20 C 1.47082 * 118.23403 * 51.45931 * 11 10 9 21 21 C 1.46904 * 110.99940 * 294.30236 * 8 7 6 22 22 C 1.38051 * 119.29102 * 359.52971 * 6 5 4 23 23 N 1.31973 * 120.83146 * 0.24961 * 22 6 5 24 24 H 1.09000 * 109.47628 * 59.99990 * 1 2 3 25 25 H 1.09003 * 109.47203 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46920 * 299.99286 * 1 2 3 27 27 H 1.07993 * 120.44533 * 0.02562 * 4 3 2 28 28 H 1.08003 * 120.75344 * 180.25334 * 5 4 3 29 29 H 1.09000 * 109.47047 * 149.71859 * 7 6 5 30 30 H 1.09005 * 109.47236 * 29.72421 * 7 6 5 31 31 H 1.09001 * 109.49186 * 67.29185 * 9 8 7 32 32 H 1.09000 * 109.51153 * 307.22921 * 9 8 7 33 33 H 1.09004 * 109.63143 * 186.45915 * 10 9 8 34 34 H 1.09004 * 109.79153 * 65.97703 * 10 9 8 35 35 H 0.96993 * 120.00972 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.63087 * 68.24805 * 20 11 10 37 37 H 1.08996 * 109.63194 * 188.83501 * 20 11 10 38 38 H 1.09005 * 109.48966 * 292.70358 * 21 8 7 39 39 H 1.08995 * 109.49430 * 52.78410 * 21 8 7 40 40 H 1.07996 * 119.58616 * 180.27291 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0484 2.5132 -0.0053 6 6 3.2504 3.6492 0.0002 7 6 3.8766 5.0198 -0.0003 8 7 4.0802 5.4657 1.3845 9 6 4.8989 6.6845 1.4303 10 6 5.2388 7.0131 2.8878 11 7 3.9867 7.0759 3.6569 12 6 3.7016 8.1560 4.4489 13 1 4.1223 9.1228 4.2154 14 6 2.8673 8.0093 5.5485 15 7 2.6268 6.8111 6.0372 16 14 2.0856 9.5127 6.3349 17 1 0.7307 9.7218 5.7642 18 1 1.9784 9.3049 7.8015 19 1 2.9264 10.7065 6.0644 20 6 3.0516 5.9449 3.5575 21 6 2.7951 5.6609 2.0690 22 6 1.8770 3.5097 0.0002 23 7 1.3185 2.3140 0.0001 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 4.0228 0.3696 -0.0014 28 1 5.1254 2.5948 -0.0099 29 1 3.2182 5.7200 -0.5144 30 1 4.8372 4.9803 -0.5141 31 1 4.3430 7.5128 0.9908 32 1 5.8196 6.5259 0.8689 33 1 5.7474 7.9760 2.9372 34 1 5.8835 6.2370 3.3005 35 1 2.0442 6.7086 6.8058 36 1 3.4886 5.0657 4.0310 37 1 2.1134 6.2011 4.0497 38 1 2.2685 6.5035 1.6206 39 1 2.1901 4.7596 1.9709 40 1 1.2516 4.3902 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085793468.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:20 Heat of formation + Delta-G solvation = 35.984531 kcal Electronic energy + Delta-G solvation = -21574.326762 eV Core-core repulsion = 18390.561578 eV Total energy + Delta-G solvation = -3183.765184 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.65128 -38.52104 -37.49784 -34.59951 -32.58707 -31.79255 -30.44696 -29.89011 -27.74890 -26.76452 -24.70843 -23.46485 -22.70015 -22.46225 -21.23163 -19.09398 -18.40598 -17.05954 -16.75551 -16.03484 -15.43714 -15.21167 -14.62114 -14.52803 -14.45813 -14.10505 -13.53808 -13.41524 -13.32930 -13.03485 -12.94172 -12.74823 -12.09555 -11.78515 -11.51844 -11.42835 -11.13504 -11.04216 -10.74932 -10.47444 -10.30951 -10.06492 -9.87230 -9.75068 -9.59669 -9.53031 -8.50272 -8.39107 -7.81334 -6.66220 -5.76983 -3.18308 1.16820 1.32007 3.06805 3.38289 3.45287 3.46791 3.74473 4.32691 4.48552 4.55335 4.83492 4.98068 5.04741 5.12440 5.22823 5.27839 5.39386 5.44588 5.48559 5.53597 5.68602 5.76051 5.91194 5.93381 5.96535 6.14057 6.23562 6.31434 6.39059 6.44606 6.54220 6.69927 6.93526 7.20159 7.25437 7.57779 7.65659 7.71104 7.82603 7.86501 8.44373 9.22102 9.85726 10.44259 11.31693 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023345 B = 0.004186 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.134684 B = 6686.695203 C = 7469.840160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.312 6.312 3 C 0.311 3.689 4 C -0.191 4.191 5 C -0.022 4.022 6 C -0.154 4.154 7 C 0.099 3.901 8 N -0.529 5.529 9 C 0.045 3.955 10 C 0.149 3.851 11 N -0.596 5.596 12 C -0.253 4.253 13 H 0.066 0.934 14 C 0.002 3.998 15 N -0.903 5.903 16 Si 0.902 3.098 17 H -0.288 1.288 18 H -0.291 1.291 19 H -0.279 1.279 20 C 0.180 3.820 21 C 0.032 3.968 22 C 0.146 3.854 23 N -0.540 5.540 24 H 0.056 0.944 25 H 0.093 0.907 26 H 0.059 0.941 27 H 0.139 0.861 28 H 0.141 0.859 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.028 0.972 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.025 0.975 35 H 0.254 0.746 36 H 0.025 0.975 37 H 0.088 0.912 38 H 0.026 0.974 39 H 0.061 0.939 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.070 -9.668 -14.656 17.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.219 6.219 3 C 0.132 3.868 4 C -0.212 4.212 5 C -0.048 4.048 6 C -0.157 4.157 7 C -0.029 4.029 8 N -0.253 5.253 9 C -0.084 4.084 10 C 0.022 3.978 11 N -0.319 5.319 12 C -0.382 4.382 13 H 0.084 0.916 14 C -0.197 4.197 15 N -0.548 5.548 16 Si 0.732 3.268 17 H -0.215 1.215 18 H -0.218 1.218 19 H -0.204 1.204 20 C 0.054 3.946 21 C -0.097 4.097 22 C -0.010 4.010 23 N -0.263 5.263 24 H 0.075 0.925 25 H 0.111 0.889 26 H 0.078 0.922 27 H 0.157 0.843 28 H 0.159 0.841 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.043 0.957 35 H 0.064 0.936 36 H 0.043 0.957 37 H 0.106 0.894 38 H 0.044 0.956 39 H 0.079 0.921 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.718 -10.400 -14.238 17.647 hybrid contribution -0.307 1.482 0.107 1.517 sum -1.025 -8.918 -14.131 16.741 Atomic orbital electron populations 1.22819 0.77461 1.02634 1.02503 1.86210 1.22763 1.24819 1.88131 1.19829 0.89447 0.84630 0.92894 1.21027 0.91910 0.99485 1.08741 1.21272 1.00555 0.90471 0.92471 1.20637 0.94414 0.96513 1.04138 1.20897 0.99491 0.91111 0.91414 1.62015 1.17927 1.32977 1.12425 1.22628 0.95961 0.89745 1.00059 1.20968 0.89552 0.98407 0.88882 1.44158 1.15924 1.19981 1.51838 1.19218 1.27235 0.87649 1.04118 0.91592 1.25019 1.02149 0.96388 0.96127 1.70032 1.39421 1.20882 1.24420 0.86281 0.79597 0.82563 0.78372 1.21530 1.21759 1.20415 1.20933 0.95715 0.89490 0.88496 1.23052 0.89113 0.98342 0.99155 1.22302 0.92429 0.93436 0.92828 1.67302 1.40859 0.98746 1.19369 0.92488 0.88889 0.92215 0.84342 0.84086 0.94391 0.90326 0.95322 0.91954 0.92617 0.95709 0.93623 0.95674 0.89412 0.95613 0.92107 0.82762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.38 101.05 1.05 1.46 16 2 O -0.31 -4.05 10.48 -18.73 -0.20 -4.25 16 3 C 0.31 4.37 7.49 -17.12 -0.13 4.24 16 4 C -0.19 -2.38 10.04 -39.28 -0.39 -2.78 16 5 C -0.02 -0.27 9.85 -39.31 -0.39 -0.65 16 6 C -0.15 -2.08 4.90 -104.48 -0.51 -2.59 16 7 C 0.10 1.34 5.14 -4.98 -0.03 1.32 16 8 N -0.53 -9.16 4.62 -235.47 -1.09 -10.25 16 9 C 0.05 0.79 5.62 -3.70 -0.02 0.77 16 10 C 0.15 3.14 6.69 -3.61 -0.02 3.12 16 11 N -0.60 -15.19 3.03 -171.74 -0.52 -15.71 16 12 C -0.25 -7.00 9.63 -15.06 -0.15 -7.14 16 13 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 14 C 0.00 0.05 4.93 -17.43 -0.09 -0.04 16 15 N -0.90 -26.54 11.16 55.49 0.62 -25.92 16 16 Si 0.90 21.80 29.59 -169.99 -5.03 16.77 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 20 C 0.18 4.41 5.45 -3.36 -0.02 4.40 16 21 C 0.03 0.64 5.36 -3.46 -0.02 0.62 16 22 C 0.15 2.04 9.03 -17.56 -0.16 1.88 16 23 N -0.54 -7.92 9.22 -13.33 -0.12 -8.05 16 24 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 27 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 28 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 29 H 0.04 0.50 8.07 -51.93 -0.42 0.08 16 30 H 0.08 0.92 7.92 -51.93 -0.41 0.51 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.90 7.99 -51.93 -0.41 0.49 16 33 H 0.06 1.13 7.95 -51.93 -0.41 0.71 16 34 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 2.39 6.11 -51.93 -0.32 2.07 16 38 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 1.13 5.66 -51.93 -0.29 0.84 16 40 H 0.16 1.98 7.93 -52.49 -0.42 1.56 16 LS Contribution 324.79 15.07 4.89 4.89 Total: -1.00 -31.33 324.79 -8.35 -39.68 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -6.04 Total: -1.77 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -0.87 Total: 4.60 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -1.11 Total: -59.93 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -0.20 Total: -4.25 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.33 -8.35 -39.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085793468.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.668 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds