Wall clock time and date at job start Mon Mar 30 2020 02:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99850 * 2 1 4 4 H 1.48497 * 109.46867 * 269.99676 * 3 2 1 5 5 H 1.48499 * 109.47206 * 29.99981 * 3 2 1 6 6 H 1.48503 * 109.46903 * 150.00009 * 3 2 1 7 7 C 1.37878 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99970 * 359.97438 * 7 2 1 9 9 C 1.50690 * 119.99820 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.47072 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99968 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00360 * 359.73034 * 11 10 9 13 13 C 1.50706 * 120.00081 * 180.02562 * 11 10 9 14 14 C 1.52998 * 109.47348 * 179.72561 * 13 11 10 15 15 C 1.53008 * 109.47007 * 59.99952 * 14 13 11 16 16 C 1.52998 * 109.47007 * 179.97438 * 15 14 13 17 17 C 1.52998 * 109.47322 * 59.99801 * 16 15 14 18 18 C 1.52997 * 109.47206 * 300.00380 * 17 16 15 19 19 C 1.53006 * 109.46797 * 299.99480 * 18 17 16 20 20 C 1.52998 * 109.46818 * 60.00282 * 19 18 17 21 21 C 1.52992 * 109.47451 * 299.99701 * 20 19 18 22 22 C 1.52996 * 109.46929 * 179.97438 * 14 13 11 23 23 C 1.52993 * 109.47254 * 300.00277 * 14 13 11 24 24 H 0.97005 * 120.00148 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47343 * 60.00467 * 9 7 2 26 26 H 1.08998 * 109.47656 * 300.00324 * 9 7 2 27 27 H 0.96998 * 119.99507 * 0.02562 * 10 9 7 28 28 H 1.09001 * 109.46564 * 299.73030 * 13 11 10 29 29 H 1.08998 * 109.47012 * 59.72084 * 13 11 10 30 30 H 1.09002 * 109.47164 * 300.00057 * 15 14 13 31 31 H 1.09004 * 109.46786 * 59.99901 * 15 14 13 32 32 H 1.09002 * 109.46857 * 180.02562 * 16 15 14 33 33 H 1.08995 * 109.47040 * 179.97438 * 17 16 15 34 34 H 1.09002 * 109.46792 * 59.99978 * 17 16 15 35 35 H 1.09000 * 109.47099 * 179.97438 * 18 17 16 36 36 H 1.08995 * 109.47367 * 299.99862 * 19 18 17 37 37 H 1.09006 * 109.46802 * 179.97438 * 19 18 17 38 38 H 1.09002 * 109.47051 * 179.97438 * 20 19 18 39 39 H 1.08996 * 109.47595 * 180.02562 * 21 20 19 40 40 H 1.09005 * 109.47280 * 300.00296 * 21 20 19 41 41 H 1.09000 * 109.47441 * 299.99910 * 22 14 13 42 42 H 1.08994 * 109.47235 * 60.00181 * 22 14 13 43 43 H 1.09002 * 109.47145 * 299.99770 * 23 14 13 44 44 H 1.09002 * 109.47712 * 59.99463 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5753 0.0013 11 6 5.3249 -2.8215 0.0005 12 8 6.1131 -1.8997 -0.0062 13 6 5.8273 -4.2424 0.0014 14 6 7.3573 -4.2424 -0.0067 15 6 7.8738 -3.5181 1.2382 16 6 9.4038 -3.5186 1.2305 17 6 9.9078 -2.8009 -0.0231 18 6 9.3912 -3.5251 -1.2679 19 6 9.9008 -4.9678 -1.2667 20 6 9.3967 -5.6856 -0.0131 21 6 9.9132 -4.9614 1.2317 22 6 7.8672 -5.6849 -0.0052 23 6 7.8607 -3.5242 -1.2602 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6796 0.8895 26 1 3.8745 -0.6808 -0.8904 27 1 3.3695 -3.3125 0.0020 28 1 5.4685 -4.7540 0.8945 29 1 5.4593 -4.7584 -0.8854 30 1 7.5105 -2.4904 1.2376 31 1 7.5151 -4.0298 2.1313 32 1 9.7717 -3.0030 2.1176 33 1 10.9977 -2.8009 -0.0283 34 1 9.5448 -1.7731 -0.0240 35 1 9.7499 -3.0135 -2.1610 36 1 10.9907 -4.9683 -1.2723 37 1 9.5323 -5.4840 -2.1534 38 1 9.7593 -6.7135 -0.0124 39 1 9.5545 -5.4730 2.1248 40 1 11.0033 -4.9618 1.2263 41 1 7.5086 -6.1962 0.8881 42 1 7.4993 -6.2012 -0.8917 43 1 7.4928 -4.0401 -2.1471 44 1 7.4974 -2.4965 -1.2609 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105730582.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:53 Heat of formation + Delta-G solvation = -75.922824 kcal Electronic energy + Delta-G solvation = -22801.513956 eV Core-core repulsion = 19716.436449 eV Total energy + Delta-G solvation = -3085.077508 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.55852 -38.76926 -34.50602 -33.67534 -32.53302 -32.50367 -32.31446 -28.77362 -26.62112 -25.82601 -25.80011 -22.24180 -21.42457 -21.38219 -20.42750 -19.55646 -17.36838 -17.11388 -15.87303 -15.38209 -14.97512 -14.61920 -14.39848 -14.35409 -14.26003 -13.95828 -13.53528 -13.27525 -13.18816 -12.65740 -12.47645 -12.43346 -12.28972 -12.02784 -11.82955 -11.52822 -10.97847 -10.83351 -10.82702 -10.78882 -10.77820 -10.65986 -10.34992 -9.97240 -9.84526 -9.59387 -9.52311 -9.48825 -8.76970 -8.74522 -8.08368 -6.21537 -4.23619 3.25205 3.29236 3.33122 3.41332 4.03354 4.33249 4.53079 4.53768 4.62488 5.08354 5.11674 5.13992 5.21462 5.26874 5.27945 5.31174 5.39677 5.42441 5.46043 5.62066 5.69856 5.69904 5.75961 5.82231 5.83793 5.93306 6.02463 6.03725 6.06539 6.14185 6.15487 6.19672 6.36514 6.51533 6.58579 6.59003 6.70477 6.79546 6.87553 7.08469 7.29009 7.42690 8.15367 8.54889 8.76233 8.99639 9.39038 10.90513 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.035059 B = 0.004124 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.468784 B = 6787.898644 C = 7074.659692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.221 3.779 10 N -0.708 5.708 11 C 0.501 3.499 12 O -0.549 6.549 13 C -0.135 4.135 14 C -0.031 4.031 15 C -0.115 4.115 16 C -0.083 4.083 17 C -0.105 4.105 18 C -0.083 4.083 19 C -0.107 4.107 20 C -0.083 4.083 21 C -0.107 4.107 22 C -0.103 4.103 23 C -0.115 4.115 24 H 0.267 0.733 25 H 0.024 0.976 26 H 0.020 0.980 27 H 0.395 0.605 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.050 0.950 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.147 -11.918 0.007 22.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.098 3.902 10 N -0.356 5.356 11 C 0.287 3.713 12 O -0.430 6.430 13 C -0.175 4.175 14 C -0.032 4.032 15 C -0.152 4.152 16 C -0.102 4.102 17 C -0.142 4.142 18 C -0.102 4.102 19 C -0.145 4.145 20 C -0.102 4.102 21 C -0.145 4.145 22 C -0.141 4.141 23 C -0.152 4.152 24 H 0.077 0.923 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.229 0.771 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 19.505 -11.119 0.007 22.452 hybrid contribution -0.127 0.416 -0.021 0.436 sum 19.378 -10.703 -0.014 22.137 Atomic orbital electron populations 1.69887 1.06227 1.27402 1.49535 1.24806 0.94781 0.99176 0.93883 0.86810 0.80561 0.83243 0.79018 1.19880 1.20931 1.18522 1.21115 0.88659 0.95181 1.53195 0.90320 1.19457 0.95143 0.78930 0.96637 1.46251 1.05966 1.10889 1.72482 1.20546 0.82851 0.91091 0.76847 1.90508 1.54802 1.46713 1.50930 1.21778 0.96802 0.95225 1.03735 1.20116 0.91948 0.94512 0.96589 1.21836 0.94164 1.03340 0.95835 1.21014 0.96260 0.95224 0.97663 1.21491 0.99069 0.99384 0.94305 1.21023 0.96236 0.95208 0.97697 1.21553 0.99643 0.95969 0.97327 1.21002 0.95569 0.98417 0.95195 1.21552 0.99610 0.95955 0.97379 1.21583 0.94981 0.96079 1.01423 1.21842 0.94188 1.03356 0.95782 0.92284 0.95821 0.96261 0.77127 0.89480 0.89474 0.88563 0.93161 0.91821 0.92856 0.91659 0.91820 0.92549 0.92338 0.91778 0.92339 0.92559 0.92180 0.92182 0.93159 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.96 55.43 0.77 -25.80 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.54 -14.91 9.83 -34.44 -0.34 -15.25 16 8 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 9 C 0.22 5.38 4.50 -5.20 -0.02 5.36 16 10 N -0.71 -14.09 5.55 -61.47 -0.34 -14.43 16 11 C 0.50 9.05 7.24 -10.98 -0.08 8.97 16 12 O -0.55 -11.40 11.35 5.56 0.06 -11.34 16 13 C -0.14 -1.80 4.77 -27.88 -0.13 -1.93 16 14 C -0.03 -0.39 0.51 -154.51 -0.08 -0.47 16 15 C -0.11 -1.55 4.18 -26.73 -0.11 -1.66 16 16 C -0.08 -0.98 3.19 -90.62 -0.29 -1.27 16 17 C -0.11 -1.25 5.19 -26.73 -0.14 -1.39 16 18 C -0.08 -0.98 3.20 -90.59 -0.29 -1.27 16 19 C -0.11 -1.08 5.19 -26.73 -0.14 -1.22 16 20 C -0.08 -0.82 3.19 -90.65 -0.29 -1.11 16 21 C -0.11 -1.08 5.19 -26.73 -0.14 -1.22 16 22 C -0.10 -1.08 4.47 -26.76 -0.12 -1.20 16 23 C -0.11 -1.55 4.18 -26.71 -0.11 -1.66 16 24 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 26 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 27 H 0.40 7.00 8.32 -40.82 -0.34 6.66 16 28 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.10 1.61 5.51 -51.93 -0.29 1.33 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.10 1.61 5.51 -51.93 -0.29 1.32 16 LS Contribution 321.78 15.07 4.85 4.85 Total: -1.00 -29.99 321.78 -9.30 -39.29 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -7.60 Total: 3.85 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -2.38 Total: -13.23 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.43 Total: -40.22 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.06 Total: -11.34 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.99 -9.30 -39.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105730582.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.632 kcal (2) G-P(sol) polarization free energy of solvation -29.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds