Wall clock time and date at job start Mon Mar 30 2020 02:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99850 * 2 1 4 4 H 1.48497 * 109.46867 * 269.99676 * 3 2 1 5 5 H 1.48499 * 109.47206 * 29.99981 * 3 2 1 6 6 H 1.48503 * 109.46903 * 150.00009 * 3 2 1 7 7 C 1.37878 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99970 * 359.97438 * 7 2 1 9 9 C 1.50690 * 119.99820 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.47072 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99968 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00360 * 359.73034 * 11 10 9 13 13 C 1.50706 * 120.00081 * 180.02562 * 11 10 9 14 14 C 1.52998 * 109.47348 * 179.72561 * 13 11 10 15 15 C 1.53008 * 109.47007 * 59.99952 * 14 13 11 16 16 C 1.52998 * 109.47007 * 179.97438 * 15 14 13 17 17 C 1.52998 * 109.47322 * 59.99801 * 16 15 14 18 18 C 1.52997 * 109.47206 * 300.00380 * 17 16 15 19 19 C 1.53006 * 109.46797 * 299.99480 * 18 17 16 20 20 C 1.52998 * 109.46818 * 60.00282 * 19 18 17 21 21 C 1.52992 * 109.47451 * 299.99701 * 20 19 18 22 22 C 1.52996 * 109.46929 * 179.97438 * 14 13 11 23 23 C 1.52993 * 109.47254 * 300.00277 * 14 13 11 24 24 H 0.97005 * 120.00148 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47343 * 60.00467 * 9 7 2 26 26 H 1.08998 * 109.47656 * 300.00324 * 9 7 2 27 27 H 0.96998 * 119.99507 * 0.02562 * 10 9 7 28 28 H 1.09001 * 109.46564 * 299.73030 * 13 11 10 29 29 H 1.08998 * 109.47012 * 59.72084 * 13 11 10 30 30 H 1.09002 * 109.47164 * 300.00057 * 15 14 13 31 31 H 1.09004 * 109.46786 * 59.99901 * 15 14 13 32 32 H 1.09002 * 109.46857 * 180.02562 * 16 15 14 33 33 H 1.08995 * 109.47040 * 179.97438 * 17 16 15 34 34 H 1.09002 * 109.46792 * 59.99978 * 17 16 15 35 35 H 1.09000 * 109.47099 * 179.97438 * 18 17 16 36 36 H 1.08995 * 109.47367 * 299.99862 * 19 18 17 37 37 H 1.09006 * 109.46802 * 179.97438 * 19 18 17 38 38 H 1.09002 * 109.47051 * 179.97438 * 20 19 18 39 39 H 1.08996 * 109.47595 * 180.02562 * 21 20 19 40 40 H 1.09005 * 109.47280 * 300.00296 * 21 20 19 41 41 H 1.09000 * 109.47441 * 299.99910 * 22 14 13 42 42 H 1.08994 * 109.47235 * 60.00181 * 22 14 13 43 43 H 1.09002 * 109.47145 * 299.99770 * 23 14 13 44 44 H 1.09002 * 109.47712 * 59.99463 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5753 0.0013 11 6 5.3249 -2.8215 0.0005 12 8 6.1131 -1.8997 -0.0062 13 6 5.8273 -4.2424 0.0014 14 6 7.3573 -4.2424 -0.0067 15 6 7.8738 -3.5181 1.2382 16 6 9.4038 -3.5186 1.2305 17 6 9.9078 -2.8009 -0.0231 18 6 9.3912 -3.5251 -1.2679 19 6 9.9008 -4.9678 -1.2667 20 6 9.3967 -5.6856 -0.0131 21 6 9.9132 -4.9614 1.2317 22 6 7.8672 -5.6849 -0.0052 23 6 7.8607 -3.5242 -1.2602 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6796 0.8895 26 1 3.8745 -0.6808 -0.8904 27 1 3.3695 -3.3125 0.0020 28 1 5.4685 -4.7540 0.8945 29 1 5.4593 -4.7584 -0.8854 30 1 7.5105 -2.4904 1.2376 31 1 7.5151 -4.0298 2.1313 32 1 9.7717 -3.0030 2.1176 33 1 10.9977 -2.8009 -0.0283 34 1 9.5448 -1.7731 -0.0240 35 1 9.7499 -3.0135 -2.1610 36 1 10.9907 -4.9683 -1.2723 37 1 9.5323 -5.4840 -2.1534 38 1 9.7593 -6.7135 -0.0124 39 1 9.5545 -5.4730 2.1248 40 1 11.0033 -4.9618 1.2263 41 1 7.5086 -6.1962 0.8881 42 1 7.4993 -6.2012 -0.8917 43 1 7.4928 -4.0401 -2.1471 44 1 7.4974 -2.4965 -1.2609 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105730582.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:53 Heat of formation + Delta-G solvation = -93.640660 kcal Electronic energy + Delta-G solvation = -22802.282259 eV Core-core repulsion = 19716.436449 eV Total energy + Delta-G solvation = -3085.845811 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.53201 -40.22055 -36.23208 -34.81521 -34.40371 -33.42036 -33.34776 -30.49732 -28.06591 -26.72724 -26.71556 -24.13630 -22.30593 -22.29421 -21.79688 -20.86328 -19.05080 -18.23546 -17.51979 -17.00441 -16.40551 -16.06601 -15.51475 -15.32023 -15.25937 -15.13286 -14.78646 -14.74257 -14.40760 -14.19909 -13.86203 -13.62029 -13.28858 -13.27423 -12.90362 -12.80891 -12.75215 -12.54179 -11.95382 -11.80549 -11.67979 -11.66107 -11.65741 -11.52917 -11.47099 -10.92472 -10.91467 -10.52262 -10.43189 -10.04468 -9.80618 -8.41471 -6.48128 1.30495 1.32737 1.45284 1.83271 2.26295 2.56468 2.94012 3.60681 3.64996 3.70947 4.00948 4.16230 4.25909 4.37528 4.39421 4.43992 4.45661 4.48645 4.57355 4.59143 4.77299 4.77516 4.79272 4.84203 4.89483 4.99117 5.01670 5.04222 5.16064 5.20842 5.23266 5.24873 5.26405 5.27220 5.30803 5.40791 5.54176 5.57140 5.62400 5.68270 5.71026 5.87793 6.10062 6.53521 6.92092 7.15757 7.52125 8.73435 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.035059 B = 0.004124 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.468784 B = 6787.898644 C = 7074.659692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.027 3.973 3 Si 0.938 3.062 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.234 3.766 10 N -0.712 5.712 11 C 0.497 3.503 12 O -0.576 6.576 13 C -0.127 4.127 14 C -0.031 4.031 15 C -0.114 4.114 16 C -0.084 4.084 17 C -0.105 4.105 18 C -0.084 4.084 19 C -0.103 4.103 20 C -0.083 4.083 21 C -0.103 4.103 22 C -0.099 4.099 23 C -0.114 4.114 24 H 0.272 0.728 25 H 0.009 0.991 26 H 0.008 0.992 27 H 0.406 0.594 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.036 0.964 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.148 -13.955 -0.031 25.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.174 4.174 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.076 0.924 9 C 0.110 3.890 10 N -0.362 5.362 11 C 0.285 3.715 12 O -0.458 6.458 13 C -0.166 4.166 14 C -0.031 4.031 15 C -0.152 4.152 16 C -0.102 4.102 17 C -0.143 4.143 18 C -0.102 4.102 19 C -0.141 4.141 20 C -0.101 4.101 21 C -0.141 4.141 22 C -0.136 4.136 23 C -0.152 4.152 24 H 0.081 0.919 25 H 0.027 0.973 26 H 0.026 0.974 27 H 0.241 0.759 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 21.516 -13.184 -0.033 25.234 hybrid contribution -0.755 1.057 -0.008 1.299 sum 20.761 -12.127 -0.041 24.043 Atomic orbital electron populations 1.69986 1.07673 1.28589 1.50805 1.25601 0.95525 1.02635 0.93605 0.85855 0.79190 0.79405 0.79400 1.19041 1.19744 1.18661 1.21328 0.90145 0.94522 1.52485 0.92358 1.19016 0.93167 0.81510 0.95293 1.46145 1.07190 1.09337 1.73515 1.21458 0.81638 0.93080 0.75293 1.90532 1.55313 1.48366 1.51563 1.21844 0.97363 0.91582 1.05825 1.20146 0.91296 0.96211 0.95456 1.21758 0.95655 1.01085 0.96671 1.21018 0.94930 0.96959 0.97339 1.21483 0.99959 0.97957 0.94884 1.21027 0.94907 0.96937 0.97372 1.21535 1.00409 0.94164 0.97958 1.21051 0.94940 0.99498 0.94634 1.21534 1.00374 0.94147 0.98015 1.21567 0.95604 0.93841 1.02629 1.21763 0.95673 1.01109 0.96618 0.91854 0.97308 0.97406 0.75871 0.87239 0.87218 0.92597 0.92634 0.92057 0.91244 0.94504 0.92046 0.91275 0.91553 0.89508 0.91559 0.91285 0.90978 0.90972 0.92620 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.15 13.96 21.45 0.30 -55.85 16 2 C 0.03 1.52 5.47 84.65 0.46 1.98 16 3 Si 0.94 44.75 27.47 68.60 1.88 46.63 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.26 -12.47 6.54 99.48 0.65 -11.82 16 7 C -0.55 -30.59 9.83 25.60 0.25 -30.34 16 8 H 0.06 3.42 7.84 -2.91 -0.02 3.40 16 9 C 0.23 11.64 4.50 85.63 0.38 12.02 16 10 N -0.71 -28.53 5.55 -466.79 -2.59 -31.12 16 11 C 0.50 18.01 7.24 87.66 0.63 18.64 16 12 O -0.58 -24.75 11.35 -3.04 -0.03 -24.78 16 13 C -0.13 -3.14 4.77 29.85 0.14 -3.00 16 14 C -0.03 -0.72 0.51 -52.18 -0.03 -0.75 16 15 C -0.11 -3.03 4.18 30.60 0.13 -2.90 16 16 C -0.08 -1.87 3.19 -10.79 -0.03 -1.90 16 17 C -0.11 -2.45 5.19 30.59 0.16 -2.29 16 18 C -0.08 -1.87 3.20 -10.78 -0.03 -1.90 16 19 C -0.10 -1.72 5.19 30.60 0.16 -1.56 16 20 C -0.08 -1.29 3.19 -10.81 -0.03 -1.32 16 21 C -0.10 -1.72 5.19 30.59 0.16 -1.57 16 22 C -0.10 -1.70 4.47 30.58 0.14 -1.56 16 23 C -0.11 -3.02 4.18 30.61 0.13 -2.90 16 24 H 0.27 15.28 8.31 -92.70 -0.77 14.50 16 25 H 0.01 0.47 7.20 -2.39 -0.02 0.46 16 26 H 0.01 0.42 7.57 -2.39 -0.02 0.40 16 27 H 0.41 14.33 8.32 -92.71 -0.77 13.56 16 28 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.06 1.95 5.51 -2.39 -0.01 1.93 16 31 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.04 1.03 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.06 1.95 5.51 -2.39 -0.01 1.94 16 Total: -1.00 -66.25 321.78 2.32 -63.93 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.15 Total: 20.54 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 2.62 Total: -19.35 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -2.29 Total: -86.97 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.03 Total: -24.78 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.63 kcal Total: -66.25 2.32 -63.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105730582.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.710 kcal (2) G-P(sol) polarization free energy of solvation -66.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds