Wall clock time and date at job start Mon Mar 30 2020 01:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34948 * 126.03700 * 2 1 4 4 C 1.35316 * 107.74519 * 180.15036 * 3 2 1 5 5 C 1.50699 * 126.04265 * 179.87511 * 4 3 2 6 6 C 1.50697 * 109.47218 * 269.71730 * 5 4 3 7 7 O 1.21290 * 119.99806 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00180 * 179.97438 * 6 5 4 9 9 C 1.37097 * 119.99874 * 179.97438 * 8 6 5 10 10 H 1.08001 * 119.99431 * 137.64468 * 9 8 6 11 11 C 1.38948 * 120.00305 * 317.64595 * 9 8 6 12 12 N 1.31408 * 120.00009 * 340.32300 * 11 9 8 13 13 Si 1.86797 * 119.99898 * 160.32462 * 11 9 8 14 14 H 1.48496 * 109.47291 * 60.00027 * 13 11 9 15 15 H 1.48496 * 109.47007 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.47146 * 299.99733 * 13 11 9 17 17 C 1.46494 * 119.99613 * 0.02562 * 8 6 5 18 18 C 1.54967 * 110.92527 * 131.62640 * 17 8 6 19 19 C 1.54262 * 104.16285 * 156.28911 * 18 17 8 20 20 C 1.53875 * 106.64320 * 336.44969 * 19 18 17 21 21 C 1.54266 * 106.59528 * 359.97161 * 20 19 18 22 22 C 1.39872 * 107.91831 * 359.61114 * 4 3 2 23 23 N 1.30837 * 108.20251 * 0.24270 * 22 4 3 24 24 H 1.09006 * 109.46817 * 270.25985 * 1 2 3 25 25 H 1.08999 * 109.47550 * 30.25754 * 1 2 3 26 26 H 1.08998 * 109.47165 * 150.25878 * 1 2 3 27 27 H 1.08001 * 126.12550 * 0.02562 * 3 2 1 28 28 H 1.08997 * 109.47450 * 149.71126 * 5 4 3 29 29 H 1.09008 * 109.46980 * 29.71244 * 5 4 3 30 30 H 0.96997 * 119.99923 * 180.02562 * 12 11 9 31 31 H 1.08999 * 110.67861 * 8.32136 * 17 8 6 32 32 H 1.09006 * 110.47404 * 37.64094 * 18 17 8 33 33 H 1.08998 * 110.52812 * 274.97648 * 18 17 8 34 34 H 1.08999 * 110.03795 * 217.13980 * 19 18 17 35 35 H 1.09002 * 110.03262 * 95.75539 * 19 18 17 36 36 H 1.09001 * 110.03553 * 119.25605 * 20 19 18 37 37 H 1.09000 * 110.03199 * 240.64125 * 20 19 18 38 38 H 1.09007 * 110.48645 * 142.28878 * 21 20 19 39 39 H 1.09000 * 110.49016 * 264.93347 * 21 20 19 40 40 H 1.07994 * 125.89771 * 180.26515 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0034 5 6 4.7680 1.5452 -0.0073 6 6 5.1763 1.8316 -1.4293 7 8 4.5362 1.3675 -2.3492 8 7 6.2525 2.6036 -1.6791 9 6 6.6242 2.8637 -2.9728 10 1 6.9320 3.8593 -3.2563 11 6 6.6047 1.8465 -3.9192 12 7 6.6144 0.5902 -3.5338 13 14 6.5650 2.2649 -5.7393 14 1 7.7694 3.0592 -6.0910 15 1 6.5485 1.0112 -6.5350 16 1 5.3449 3.0567 -6.0387 17 6 7.0258 3.1636 -0.5680 18 6 8.5427 2.9201 -0.7712 19 6 9.2180 4.0262 0.0656 20 6 8.1905 5.1632 0.2042 21 6 6.9260 4.7093 -0.5539 22 6 3.5346 -0.7321 0.0035 23 7 2.2891 -1.1327 0.0055 24 1 -0.3633 0.0047 1.0277 25 1 -0.3634 0.8876 -0.5178 26 1 -0.3633 -0.8923 -0.5098 27 1 1.9281 2.1193 0.0004 28 1 5.5821 1.0364 0.5090 29 1 4.5442 2.4825 0.5023 30 1 6.6012 -0.1198 -4.1945 31 1 6.6922 2.7463 0.3820 32 1 8.8077 3.0224 -1.8236 33 1 8.8247 1.9348 -0.3999 34 1 10.1098 4.3891 -0.4454 35 1 9.4829 3.6404 1.0500 36 1 7.9562 5.3287 1.2558 37 1 8.5840 6.0781 -0.2388 38 1 6.0284 5.0287 -0.0243 39 1 6.9297 5.1010 -1.5711 40 1 4.4053 -1.3710 0.0070 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125014535.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:38 Heat of formation + Delta-G solvation = 27.572077 kcal Electronic energy + Delta-G solvation = -22109.609915 eV Core-core repulsion = 18925.479939 eV Total energy + Delta-G solvation = -3184.129976 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.04344 -40.30235 -38.19855 -35.22458 -34.35275 -33.48912 -32.33750 -29.36776 -29.26853 -28.23334 -27.18801 -25.68651 -21.98029 -21.91682 -21.40402 -20.87145 -20.51346 -18.12455 -17.66987 -17.52305 -16.67872 -16.25702 -16.02678 -15.75063 -15.50983 -15.13285 -14.77128 -14.29885 -14.03448 -13.83978 -13.80376 -13.42570 -13.27269 -13.06163 -12.96415 -12.84623 -12.58162 -12.29122 -12.12635 -11.94516 -11.90115 -11.76703 -11.47726 -11.25607 -11.06469 -10.64864 -10.25118 -9.86980 -9.17867 -8.87198 -8.09337 -5.81964 1.02239 1.37151 1.45132 1.47788 1.78424 1.90592 2.38467 2.64044 3.34170 3.38788 3.72138 4.01145 4.03060 4.07862 4.20368 4.36130 4.41948 4.46801 4.56180 4.59633 4.67989 4.70805 4.79178 4.83805 4.92541 4.93891 5.00734 5.03177 5.17954 5.27423 5.33156 5.35919 5.52576 5.63424 5.66874 5.71732 5.77107 6.24924 6.32951 6.78777 7.18807 7.41436 7.89782 8.58099 8.98647 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014351 B = 0.006577 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.619172 B = 4256.370644 C = 5584.640008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.383 5.383 3 C 0.062 3.938 4 C -0.222 4.222 5 C -0.044 4.044 6 C 0.465 3.535 7 O -0.583 6.583 8 N -0.464 5.464 9 C -0.340 4.340 10 H 0.074 0.926 11 C 0.023 3.977 12 N -0.865 5.865 13 Si 0.954 3.046 14 H -0.259 1.259 15 H -0.295 1.295 16 H -0.284 1.284 17 C 0.120 3.880 18 C -0.122 4.122 19 C -0.114 4.114 20 C -0.111 4.111 21 C -0.128 4.128 22 C 0.045 3.955 23 N -0.336 5.336 24 H 0.095 0.905 25 H 0.108 0.892 26 H 0.085 0.915 27 H 0.200 0.800 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.252 0.748 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.047 6.587 12.339 14.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.166 5.166 3 C -0.084 4.084 4 C -0.234 4.234 5 C -0.086 4.086 6 C 0.254 3.746 7 O -0.464 6.464 8 N -0.186 5.186 9 C -0.468 4.468 10 H 0.092 0.908 11 C -0.183 4.183 12 N -0.501 5.501 13 Si 0.781 3.219 14 H -0.183 1.183 15 H -0.221 1.221 16 H -0.211 1.211 17 C 0.016 3.984 18 C -0.161 4.161 19 C -0.152 4.152 20 C -0.149 4.149 21 C -0.167 4.167 22 C -0.139 4.139 23 N -0.159 5.159 24 H 0.113 0.887 25 H 0.126 0.874 26 H 0.104 0.896 27 H 0.217 0.783 28 H 0.108 0.892 29 H 0.127 0.873 30 H 0.061 0.939 31 H 0.113 0.887 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -5.330 5.154 11.811 13.945 hybrid contribution 0.679 0.248 -1.543 1.704 sum -4.651 5.402 10.268 12.500 Atomic orbital electron populations 1.22154 0.72018 1.05463 1.04756 1.48699 1.07820 1.03197 1.56837 1.22617 0.90410 0.94294 1.01093 1.19761 0.94814 0.93576 1.15216 1.19849 0.94930 0.99644 0.94147 1.20853 0.81012 0.81773 0.90971 1.90479 1.55222 1.52485 1.48223 1.43527 1.23274 1.47002 1.04754 1.18904 1.47894 0.94293 0.85714 0.90841 1.25843 0.95274 0.94614 1.02582 1.69976 1.45616 0.99635 1.34875 0.85615 0.78555 0.77017 0.80728 1.18310 1.22102 1.21067 1.22343 0.91709 0.94151 0.90183 1.22482 0.95344 0.98160 1.00117 1.22058 0.98094 0.95136 0.99935 1.22031 0.94125 0.97879 1.00860 1.22620 0.98835 0.95125 1.00130 1.23821 0.95175 0.95499 0.99442 1.77135 1.02055 1.09888 1.26793 0.88700 0.87393 0.89630 0.78346 0.89205 0.87297 0.93934 0.88681 0.93321 0.93500 0.91875 0.90346 0.89766 0.91470 0.90966 0.93490 0.80629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.85 11.47 127.77 1.47 3.32 16 2 N -0.38 -12.10 4.01 -369.55 -1.48 -13.58 16 3 C 0.06 2.01 11.40 83.54 0.95 2.97 16 4 C -0.22 -8.40 4.59 -20.14 -0.09 -8.49 16 5 C -0.04 -1.65 4.52 29.10 0.13 -1.52 16 6 C 0.47 23.29 6.97 87.66 0.61 23.90 16 7 O -0.58 -35.37 13.66 -3.06 -0.04 -35.41 16 8 N -0.46 -22.53 2.57 -606.33 -1.56 -24.09 16 9 C -0.34 -18.61 7.41 84.04 0.62 -17.99 16 10 H 0.07 3.92 7.02 -2.91 -0.02 3.90 16 11 C 0.02 1.31 4.33 84.93 0.37 1.68 16 12 N -0.87 -53.56 11.67 21.66 0.25 -53.31 16 13 Si 0.95 46.95 29.60 68.60 2.03 48.98 16 14 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 15 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 16 H -0.28 -14.18 7.11 99.48 0.71 -13.47 16 17 C 0.12 4.42 3.16 46.31 0.15 4.57 16 18 C -0.12 -4.43 6.31 31.69 0.20 -4.23 16 19 C -0.11 -2.95 6.80 31.32 0.21 -2.73 16 20 C -0.11 -2.62 6.80 31.32 0.21 -2.41 16 21 C -0.13 -3.97 6.42 31.67 0.20 -3.76 16 22 C 0.05 1.80 11.96 85.24 1.02 2.82 16 23 N -0.34 -12.91 12.58 -57.03 -0.72 -13.63 16 24 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.20 4.85 8.06 -2.91 -0.02 4.83 16 28 H 0.09 3.12 7.65 -2.39 -0.02 3.10 16 29 H 0.11 3.23 7.96 -2.38 -0.02 3.21 16 30 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 31 H 0.10 3.03 5.96 -2.39 -0.01 3.01 16 32 H 0.05 2.10 6.96 -2.38 -0.02 2.09 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 37 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.05 1.70 6.91 -2.39 -0.02 1.68 16 40 H 0.18 6.62 8.06 -2.91 -0.02 6.60 16 Total: -1.00 -79.48 327.72 5.56 -73.92 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 1.02 Total: 18.98 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 6.05 Total: -1.87 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -3.51 Total: -104.61 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -0.04 Total: -35.41 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -79.48 5.56 -73.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125014535.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.491 kcal (2) G-P(sol) polarization free energy of solvation -79.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds