Wall clock time and date at job start Mon Mar 30 2020 01:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.40024 * 110.99872 * 236.04370 * 2 1 3 5 5 C 1.38672 * 120.08996 * 60.00581 * 4 2 1 6 6 C 1.38262 * 119.99489 * 180.02562 * 5 4 2 7 7 C 1.38258 * 120.19690 * 359.97438 * 6 5 4 8 8 C 1.38276 * 120.19184 * 0.02562 * 7 6 5 9 9 C 1.38664 * 119.99609 * 359.68035 * 8 7 6 10 10 N 1.40017 * 120.09708 * 180.30305 * 9 8 7 11 11 C 1.46907 * 110.99748 * 296.33702 * 10 9 8 12 12 C 1.46890 * 111.00179 * 60.29155 * 10 9 8 13 13 C 1.50701 * 109.47232 * 170.00269 * 12 10 9 14 14 O 1.21293 * 120.00004 * 0.02562 * 13 12 10 15 15 N 1.34780 * 120.00235 * 179.97438 * 13 12 10 16 16 C 1.37098 * 120.00164 * 179.97438 * 15 13 12 17 17 H 1.07996 * 119.99576 * 0.02562 * 16 15 13 18 18 C 1.38947 * 120.00034 * 179.97438 * 16 15 13 19 19 N 1.31410 * 119.99801 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99874 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.46998 * 89.99829 * 20 18 16 22 22 H 1.48497 * 109.46826 * 209.99344 * 20 18 16 23 23 H 1.48499 * 109.47128 * 329.99508 * 20 18 16 24 24 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 25 25 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 26 26 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 27 27 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 28 28 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 29 29 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 30 30 H 1.07996 * 119.99871 * 0.02562 * 5 4 2 31 31 H 1.08003 * 119.90533 * 179.97438 * 6 5 4 32 32 H 1.07998 * 119.90854 * 180.02562 * 7 6 5 33 33 H 1.07998 * 119.99968 * 179.97438 * 8 7 6 34 34 H 1.09007 * 109.46726 * 59.99900 * 11 10 9 35 35 H 1.09001 * 109.47251 * 179.97438 * 11 10 9 36 36 H 1.08996 * 109.47247 * 300.00596 * 11 10 9 37 37 H 1.08999 * 109.47498 * 290.00221 * 12 10 9 38 38 H 1.08997 * 109.47068 * 50.00242 * 12 10 9 39 39 H 0.96998 * 119.99617 * 0.02562 * 15 13 12 40 40 H 0.97007 * 119.99762 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9708 -0.7302 -1.0843 5 6 1.6599 -0.3508 -2.3814 6 6 2.1560 -1.0736 -3.4506 7 6 2.9628 -2.1747 -3.2312 8 6 3.2777 -2.5600 -1.9411 9 6 2.7896 -1.8374 -0.8631 10 7 3.1124 -2.2219 0.4440 11 6 2.5681 -3.5514 0.7512 12 6 4.5648 -2.1848 0.6601 13 6 4.8590 -2.3624 2.1274 14 8 3.9483 -2.5062 2.9155 15 7 6.1342 -2.3624 2.5639 16 6 6.4019 -2.5234 3.8988 17 1 5.5909 -2.6506 4.6006 18 6 7.7165 -2.5240 4.3487 19 7 7.9730 -2.6788 5.6282 20 14 9.1192 -2.3046 3.1347 21 1 9.4298 -0.8594 2.9930 22 1 10.3204 -3.0227 3.6313 23 1 8.7224 -2.8574 1.8147 24 1 -0.3634 -1.0252 0.0708 25 1 -0.3633 0.4513 -0.9233 26 1 -0.3633 0.5740 0.8525 27 1 1.5899 1.9163 0.8525 28 1 3.0829 1.3431 0.0709 29 1 1.7045 1.8723 -0.9233 30 1 1.0304 0.5090 -2.5563 31 1 1.9127 -0.7771 -4.4603 32 1 3.3481 -2.7357 -4.0698 33 1 3.9078 -3.4209 -1.7733 34 1 2.9843 -4.2832 0.0586 35 1 2.8338 -3.8258 1.7721 36 1 1.4830 -3.5320 0.6504 37 1 5.0369 -2.9885 0.0951 38 1 4.9577 -1.2252 0.3243 39 1 6.8625 -2.2478 1.9336 40 1 8.8908 -2.6788 5.9423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136201751.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:56 Heat of formation + Delta-G solvation = 6.037679 kcal Electronic energy + Delta-G solvation = -21749.092033 eV Core-core repulsion = 18564.028256 eV Total energy + Delta-G solvation = -3185.063777 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.35041 -40.17242 -37.95076 -36.84817 -35.85125 -33.73665 -31.04421 -30.71801 -29.47116 -28.44142 -26.83413 -25.50392 -25.23568 -22.44652 -21.66995 -21.21364 -20.13795 -18.42459 -17.53737 -17.00638 -16.83524 -16.57349 -16.17042 -15.93610 -15.60566 -15.27903 -15.21536 -14.89321 -14.64705 -14.37759 -14.19711 -13.85016 -13.43917 -13.18608 -13.14275 -12.93445 -12.80679 -12.64391 -12.57787 -12.39891 -12.37195 -12.20865 -11.96679 -11.46363 -10.38648 -10.21649 -9.77105 -9.49517 -9.25249 -9.17933 -8.39471 -5.99723 0.35661 0.37745 1.30294 1.35857 1.44342 1.96901 2.23875 2.58970 2.77135 3.01321 3.15745 3.22032 4.01673 4.06381 4.18403 4.22748 4.25743 4.34304 4.40397 4.41498 4.45776 4.52027 4.60373 4.63768 4.74493 4.77451 4.86578 4.98866 4.99884 5.13220 5.42169 5.51173 5.55081 5.57971 5.86899 5.91464 5.98878 6.09496 6.27494 6.61408 6.77997 6.90545 7.41406 7.99076 8.78300 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022888 B = 0.004539 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.062513 B = 6167.590309 C = 6532.124860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.520 5.520 3 C 0.037 3.963 4 C 0.096 3.904 5 C -0.148 4.148 6 C -0.110 4.110 7 C -0.111 4.111 8 C -0.151 4.151 9 C 0.089 3.911 10 N -0.485 5.485 11 C 0.039 3.961 12 C 0.064 3.936 13 C 0.456 3.544 14 O -0.599 6.599 15 N -0.593 5.593 16 C -0.325 4.325 17 H 0.056 0.944 18 C -0.014 4.014 19 N -0.935 5.935 20 Si 0.962 3.038 21 H -0.258 1.258 22 H -0.274 1.274 23 H -0.233 1.233 24 H 0.056 0.944 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.136 0.864 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.128 0.872 34 H 0.037 0.963 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.388 0.612 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.121 4.821 -24.185 26.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.241 5.241 3 C -0.109 4.109 4 C 0.002 3.998 5 C -0.168 4.168 6 C -0.128 4.128 7 C -0.130 4.130 8 C -0.171 4.171 9 C -0.005 4.005 10 N -0.206 5.206 11 C -0.108 4.108 12 C -0.066 4.066 13 C 0.244 3.756 14 O -0.482 6.482 15 N -0.235 5.235 16 C -0.454 4.454 17 H 0.074 0.926 18 C -0.212 4.212 19 N -0.576 5.576 20 Si 0.782 3.218 21 H -0.182 1.182 22 H -0.199 1.199 23 H -0.156 1.156 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.153 0.847 31 H 0.169 0.831 32 H 0.167 0.833 33 H 0.146 0.854 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.122 0.878 39 H 0.223 0.777 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.676 4.826 -22.662 25.109 hybrid contribution 0.997 -0.193 -0.684 1.224 sum -8.679 4.633 -23.346 25.334 Atomic orbital electron populations 1.22378 0.85321 1.02027 1.01302 1.59387 1.08755 1.14281 1.41713 1.22356 1.00208 0.87127 1.01240 1.18920 0.97230 0.94319 0.89374 1.21745 1.01644 1.01220 0.92193 1.21381 0.96868 0.94975 0.99589 1.21356 0.97942 0.97294 0.96394 1.21830 1.01362 1.00437 0.93484 1.18968 0.98280 0.95547 0.87731 1.58933 1.10557 1.28861 1.22223 1.22373 0.99856 0.87210 1.01313 1.21785 0.89204 1.03607 0.91969 1.20683 0.82287 0.81315 0.91329 1.90523 1.45498 1.53859 1.58331 1.42021 1.06920 1.67110 1.07466 1.18988 0.93966 1.48957 0.83457 0.92596 1.26063 1.00384 0.96288 0.98481 1.69805 1.21796 1.50135 1.15853 0.85403 0.77472 0.79776 0.79128 1.18236 1.19873 1.15625 0.92501 0.93871 0.90712 0.90794 0.92834 0.93811 0.84657 0.83097 0.83313 0.85387 0.94476 0.92171 0.91630 0.90430 0.87756 0.77684 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 9.35 127.69 1.19 2.00 16 2 N -0.52 -14.27 4.70 -744.38 -3.50 -17.77 16 3 C 0.04 0.87 9.39 127.69 1.20 2.07 16 4 C 0.10 2.48 4.76 38.23 0.18 2.66 16 5 C -0.15 -2.83 8.58 22.38 0.19 -2.64 16 6 C -0.11 -1.71 10.04 22.28 0.22 -1.48 16 7 C -0.11 -1.85 10.04 22.28 0.22 -1.63 16 8 C -0.15 -3.32 8.66 22.38 0.19 -3.13 16 9 C 0.09 2.49 4.71 38.23 0.18 2.67 16 10 N -0.49 -16.72 4.18 -723.77 -3.03 -19.75 16 11 C 0.04 1.33 9.02 127.69 1.15 2.48 16 12 C 0.06 2.23 5.04 85.56 0.43 2.67 16 13 C 0.46 21.67 7.48 87.66 0.66 22.32 16 14 O -0.60 -34.30 13.91 -3.07 -0.04 -34.34 16 15 N -0.59 -28.99 5.09 -306.98 -1.56 -30.55 16 16 C -0.32 -19.40 10.16 84.04 0.85 -18.55 16 17 H 0.06 3.97 7.39 -2.91 -0.02 3.95 16 18 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 19 N -0.93 -57.14 13.96 21.66 0.30 -56.84 16 20 Si 0.96 39.56 27.74 68.60 1.90 41.47 16 21 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 23 H -0.23 -8.12 6.52 99.48 0.65 -7.47 16 24 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.04 0.75 7.13 -2.39 -0.02 0.73 16 26 H 0.07 1.55 8.12 -2.38 -0.02 1.53 16 27 H 0.07 1.64 8.12 -2.38 -0.02 1.62 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.04 0.81 7.35 -2.39 -0.02 0.79 16 30 H 0.14 2.09 7.02 -2.91 -0.02 2.07 16 31 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 32 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.13 2.60 7.14 -2.91 -0.02 2.58 16 34 H 0.04 1.06 7.33 -2.38 -0.02 1.05 16 35 H 0.06 2.53 5.82 -2.39 -0.01 2.51 16 36 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.08 2.24 7.50 -2.39 -0.02 2.22 16 38 H 0.10 3.28 8.06 -2.39 -0.02 3.26 16 39 H 0.39 15.84 5.76 -92.71 -0.53 15.31 16 40 H 0.28 15.55 8.31 -92.70 -0.77 14.78 16 Total: -1.00 -77.37 328.60 1.67 -75.69 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: 0.45 Total: 32.94 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 7.15 Total: 9.15 kcal Atomic # 7 Polarization: -117.12 SS G_CDS: -7.78 Total: -124.91 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -0.04 Total: -34.34 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 1.90 Total: 41.47 kcal Total: -77.37 1.67 -75.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136201751.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.731 kcal (2) G-P(sol) polarization free energy of solvation -77.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds