Wall clock time and date at job start Mon Mar 30 2020 01:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00234 * 2 1 4 4 C 1.50703 * 109.47275 * 270.00304 * 3 2 1 5 5 H 1.07992 * 119.99724 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99647 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00716 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99817 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47196 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47056 * 120.00327 * 8 6 4 11 11 H 1.48501 * 109.47189 * 240.00148 * 8 6 4 12 12 C 1.34778 * 119.99866 * 180.02562 * 2 1 3 13 13 O 1.21575 * 119.99863 * 183.49861 * 12 2 1 14 14 C 1.47706 * 120.00052 * 3.49404 * 12 2 1 15 15 C 1.41503 * 126.51810 * 173.47871 * 14 12 2 16 16 C 1.35370 * 105.50374 * 180.02562 * 15 14 12 17 17 N 1.35039 * 107.22566 * 359.97438 * 16 15 14 18 18 C 1.46504 * 124.88291 * 179.97438 * 17 16 15 19 19 C 1.54266 * 110.02989 * 32.88443 * 18 17 16 20 20 C 1.54962 * 104.15882 * 217.13596 * 19 18 17 21 21 C 1.54882 * 102.77953 * 37.89189 * 20 19 18 22 22 C 1.53875 * 110.03263 * 275.67160 * 18 17 16 23 23 N 1.28460 * 110.23469 * 0.02562 * 17 16 15 24 24 H 1.09009 * 109.46764 * 264.09517 * 1 2 3 25 25 H 1.09001 * 109.46979 * 24.09031 * 1 2 3 26 26 H 1.08995 * 109.47373 * 144.09754 * 1 2 3 27 27 H 1.09003 * 109.46649 * 30.00630 * 3 2 1 28 28 H 1.09001 * 109.47014 * 150.00081 * 3 2 1 29 29 H 0.96996 * 120.00487 * 179.97438 * 7 6 4 30 30 H 1.07994 * 127.25197 * 0.03664 * 15 14 12 31 31 H 1.08001 * 126.38675 * 179.97438 * 16 15 14 32 32 H 1.08988 * 110.01658 * 154.27948 * 18 17 16 33 33 H 1.09002 * 110.48654 * 335.78517 * 19 18 17 34 34 H 1.09001 * 110.48177 * 98.43026 * 19 18 17 35 35 H 1.08999 * 110.72255 * 279.57217 * 20 19 18 36 36 H 1.09000 * 110.76307 * 156.22588 * 20 19 18 37 37 H 1.09001 * 110.49028 * 203.40709 * 21 20 19 38 38 H 1.09003 * 110.59885 * 80.81721 * 21 20 19 39 39 H 1.09004 * 110.02923 * 238.56935 * 22 18 17 40 40 H 1.09003 * 110.03585 * 359.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0963 -2.2416 6 6 3.1260 2.8780 -1.6726 7 7 3.5534 3.6181 -0.6730 8 14 3.4367 3.4177 -3.4338 9 1 2.8587 2.4178 -4.3673 10 1 2.7988 4.7384 -3.6667 11 1 4.8992 3.5264 -3.6675 12 6 2.1389 -1.1672 -0.0005 13 8 3.3529 -1.1682 0.0637 14 6 1.4024 -2.4452 -0.0791 15 6 1.9669 -3.7352 -0.2186 16 6 0.9166 -4.5888 -0.2459 17 7 -0.2053 -3.8463 -0.1286 18 6 -1.5681 -4.3838 -0.1142 19 6 -1.5805 -5.7744 0.5536 20 6 -2.6212 -6.5790 -0.2655 21 6 -2.3725 -6.0870 -1.7129 22 6 -2.0717 -4.5823 -1.5546 23 7 0.0942 -2.6008 -0.0327 24 1 -0.3633 -0.1057 1.0223 25 1 -0.3633 0.9382 -0.4195 26 1 -0.3634 -0.8324 -0.6026 27 1 1.6085 2.0283 0.5140 28 1 3.1500 1.1383 0.5138 29 1 4.0303 4.4439 -0.8502 30 1 3.0150 -3.9861 -0.2883 31 1 0.9665 -5.6632 -0.3433 32 1 -2.2309 -3.7057 0.4230 33 1 -0.5975 -6.2401 0.4835 34 1 -1.8925 -5.6947 1.5950 35 1 -3.6346 -6.3380 0.0557 36 1 -2.4333 -7.6495 -0.1837 37 1 -3.2623 -6.2359 -2.3246 38 1 -1.5183 -6.6027 -2.1517 39 1 -2.9796 -4.0010 -1.7160 40 1 -1.3024 -4.2783 -2.2644 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150818430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:22 Heat of formation + Delta-G solvation = 49.017899 kcal Electronic energy + Delta-G solvation = -21472.501743 eV Core-core repulsion = 18289.301728 eV Total energy + Delta-G solvation = -3183.200015 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.52875 -38.73838 -38.02526 -34.68417 -32.68064 -32.18619 -30.61023 -29.21212 -28.37037 -27.27704 -25.67350 -23.70213 -22.38475 -21.61317 -20.88497 -19.79657 -18.66356 -17.47719 -16.49010 -16.38037 -15.92171 -15.30995 -15.15591 -14.90487 -14.17667 -13.98751 -13.90396 -13.34751 -13.07029 -12.61001 -12.32694 -12.26842 -12.00500 -11.87465 -11.82061 -11.63415 -11.61805 -11.23527 -11.12888 -11.04654 -10.85605 -10.53356 -10.24142 -10.00626 -9.53271 -9.05013 -8.96884 -8.77934 -8.36663 -7.48596 -5.96969 -4.01446 1.98202 2.46367 2.51685 3.35002 3.42030 3.47166 3.91307 4.02982 4.07880 4.24399 4.39759 4.51693 4.71170 4.79052 4.85372 4.93000 5.00169 5.08574 5.13724 5.32221 5.36624 5.41744 5.57253 5.59163 5.61666 5.75846 5.81528 5.93540 6.00771 6.12805 6.25656 6.47056 6.70802 6.97778 7.21887 7.53952 7.67025 8.00117 8.17693 8.31606 8.55462 8.98320 9.20178 9.63394 11.11043 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029975 B = 0.003812 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.899498 B = 7344.417403 C = 7612.399024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.587 5.587 3 C 0.244 3.756 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.586 3.414 13 O -0.538 6.538 14 C 0.001 3.999 15 C -0.182 4.182 16 C -0.026 4.026 17 N -0.287 5.287 18 C 0.145 3.855 19 C -0.136 4.136 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.137 4.137 23 N -0.261 5.261 24 H 0.040 0.960 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.034 0.966 28 H 0.046 0.954 29 H 0.262 0.738 30 H 0.159 0.841 31 H 0.174 0.826 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.026 -21.349 1.096 26.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.318 5.318 3 C 0.125 3.875 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.371 3.629 13 O -0.414 6.414 14 C -0.160 4.160 15 C -0.210 4.210 16 C -0.168 4.168 17 N -0.075 5.075 18 C 0.044 3.956 19 C -0.174 4.174 20 C -0.159 4.159 21 C -0.162 4.162 22 C -0.176 4.176 23 N -0.096 5.096 24 H 0.059 0.941 25 H 0.085 0.915 26 H 0.099 0.901 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.176 0.824 31 H 0.191 0.809 32 H 0.128 0.872 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.401 -20.573 1.280 25.731 hybrid contribution 0.844 -0.030 -1.068 1.361 sum -14.557 -20.602 0.212 25.227 Atomic orbital electron populations 1.21895 0.80652 1.02853 1.00697 1.48016 1.06799 1.07215 1.69734 1.19357 0.92692 0.77909 0.97570 1.21498 1.36237 1.06236 0.92327 0.92360 1.24937 0.95410 0.96376 0.97437 1.69948 1.38551 1.14341 1.30619 0.86436 0.78044 0.78250 0.84654 1.19817 1.20997 1.20854 1.16942 0.86270 0.81613 0.78107 1.90747 1.12839 1.86456 1.51380 1.22436 0.89323 0.96061 1.08143 1.21765 1.00098 0.90919 1.08232 1.22592 0.85860 0.99014 1.09334 1.45836 1.06837 1.03753 1.51042 1.22227 0.79111 0.96101 0.98160 1.22845 1.01352 0.93170 1.00072 1.22488 0.98936 0.99840 0.94679 1.22378 1.02029 0.94793 0.97021 1.22604 1.02401 0.97510 0.95046 1.73807 1.16637 0.99328 1.19820 0.94101 0.91503 0.90069 0.94796 0.93606 0.92814 0.82367 0.80880 0.87225 0.89847 0.90080 0.90797 0.90678 0.90944 0.91195 0.89985 0.90442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.61 9.63 59.85 0.58 2.19 16 2 N -0.59 -14.12 2.86 -184.12 -0.53 -14.64 16 3 C 0.24 6.81 5.16 -5.19 -0.03 6.79 16 4 C -0.52 -15.61 9.39 -34.44 -0.32 -15.94 16 5 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 8 Si 0.90 22.54 29.54 -169.99 -5.02 17.52 16 9 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 12 C 0.59 14.11 7.68 -12.39 -0.10 14.02 16 13 O -0.54 -14.81 16.49 5.30 0.09 -14.72 16 14 C 0.00 0.02 6.82 -82.76 -0.56 -0.55 16 15 C -0.18 -2.93 10.81 -39.36 -0.43 -3.36 16 16 C -0.03 -0.31 10.38 -17.16 -0.18 -0.49 16 17 N -0.29 -3.66 3.13 -53.74 -0.17 -3.83 16 18 C 0.15 1.26 3.87 -66.81 -0.26 1.00 16 19 C -0.14 -0.83 6.36 -25.03 -0.16 -0.99 16 20 C -0.12 -0.56 6.91 -24.70 -0.17 -0.73 16 21 C -0.12 -0.68 6.83 -25.08 -0.17 -0.85 16 22 C -0.14 -1.05 6.59 -25.61 -0.17 -1.22 16 23 N -0.26 -4.34 8.50 33.42 0.28 -4.06 16 24 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 25 H 0.07 1.27 8.03 -51.93 -0.42 0.86 16 26 H 0.08 1.48 5.35 -51.93 -0.28 1.21 16 27 H 0.03 0.95 8.07 -51.93 -0.42 0.53 16 28 H 0.05 1.42 7.38 -51.93 -0.38 1.03 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.16 2.42 8.06 -52.49 -0.42 1.99 16 31 H 0.17 1.41 6.84 -52.49 -0.36 1.05 16 32 H 0.11 0.92 8.14 -51.94 -0.42 0.50 16 33 H 0.08 0.51 5.86 -51.93 -0.30 0.20 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.76 7.92 -51.93 -0.41 0.35 16 LS Contribution 329.78 15.07 4.97 4.97 Total: -1.00 -35.46 329.78 -7.62 -43.09 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -5.92 Total: -3.21 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -2.06 Total: 1.55 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.33 Total: -49.18 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: 0.09 Total: -14.72 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.46 -7.62 -43.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150818430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.105 kcal (2) G-P(sol) polarization free energy of solvation -35.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds