Wall clock time and date at job start Mon Mar 30 2020 01:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00234 * 2 1 4 4 C 1.50703 * 109.47275 * 270.00304 * 3 2 1 5 5 H 1.07992 * 119.99724 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99647 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00716 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99817 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47196 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47056 * 120.00327 * 8 6 4 11 11 H 1.48501 * 109.47189 * 240.00148 * 8 6 4 12 12 C 1.34778 * 119.99866 * 180.02562 * 2 1 3 13 13 O 1.21575 * 119.99863 * 183.49861 * 12 2 1 14 14 C 1.47706 * 120.00052 * 3.49404 * 12 2 1 15 15 C 1.41503 * 126.51810 * 173.47871 * 14 12 2 16 16 C 1.35370 * 105.50374 * 180.02562 * 15 14 12 17 17 N 1.35039 * 107.22566 * 359.97438 * 16 15 14 18 18 C 1.46504 * 124.88291 * 179.97438 * 17 16 15 19 19 C 1.54266 * 110.02989 * 32.88443 * 18 17 16 20 20 C 1.54962 * 104.15882 * 217.13596 * 19 18 17 21 21 C 1.54882 * 102.77953 * 37.89189 * 20 19 18 22 22 C 1.53875 * 110.03263 * 275.67160 * 18 17 16 23 23 N 1.28460 * 110.23469 * 0.02562 * 17 16 15 24 24 H 1.09009 * 109.46764 * 264.09517 * 1 2 3 25 25 H 1.09001 * 109.46979 * 24.09031 * 1 2 3 26 26 H 1.08995 * 109.47373 * 144.09754 * 1 2 3 27 27 H 1.09003 * 109.46649 * 30.00630 * 3 2 1 28 28 H 1.09001 * 109.47014 * 150.00081 * 3 2 1 29 29 H 0.96996 * 120.00487 * 179.97438 * 7 6 4 30 30 H 1.07994 * 127.25197 * 0.03664 * 15 14 12 31 31 H 1.08001 * 126.38675 * 179.97438 * 16 15 14 32 32 H 1.08988 * 110.01658 * 154.27948 * 18 17 16 33 33 H 1.09002 * 110.48654 * 335.78517 * 19 18 17 34 34 H 1.09001 * 110.48177 * 98.43026 * 19 18 17 35 35 H 1.08999 * 110.72255 * 279.57217 * 20 19 18 36 36 H 1.09000 * 110.76307 * 156.22588 * 20 19 18 37 37 H 1.09001 * 110.49028 * 203.40709 * 21 20 19 38 38 H 1.09003 * 110.59885 * 80.81721 * 21 20 19 39 39 H 1.09004 * 110.02923 * 238.56935 * 22 18 17 40 40 H 1.09003 * 110.03585 * 359.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0963 -2.2416 6 6 3.1260 2.8780 -1.6726 7 7 3.5534 3.6181 -0.6730 8 14 3.4367 3.4177 -3.4338 9 1 2.8587 2.4178 -4.3673 10 1 2.7988 4.7384 -3.6667 11 1 4.8992 3.5264 -3.6675 12 6 2.1389 -1.1672 -0.0005 13 8 3.3529 -1.1682 0.0637 14 6 1.4024 -2.4452 -0.0791 15 6 1.9669 -3.7352 -0.2186 16 6 0.9166 -4.5888 -0.2459 17 7 -0.2053 -3.8463 -0.1286 18 6 -1.5681 -4.3838 -0.1142 19 6 -1.5805 -5.7744 0.5536 20 6 -2.6212 -6.5790 -0.2655 21 6 -2.3725 -6.0870 -1.7129 22 6 -2.0717 -4.5823 -1.5546 23 7 0.0942 -2.6008 -0.0327 24 1 -0.3633 -0.1057 1.0223 25 1 -0.3633 0.9382 -0.4195 26 1 -0.3634 -0.8324 -0.6026 27 1 1.6085 2.0283 0.5140 28 1 3.1500 1.1383 0.5138 29 1 4.0303 4.4439 -0.8502 30 1 3.0150 -3.9861 -0.2883 31 1 0.9665 -5.6632 -0.3433 32 1 -2.2309 -3.7057 0.4230 33 1 -0.5975 -6.2401 0.4835 34 1 -1.8925 -5.6947 1.5950 35 1 -3.6346 -6.3380 0.0557 36 1 -2.4333 -7.6495 -0.1837 37 1 -3.2623 -6.2359 -2.3246 38 1 -1.5183 -6.6027 -2.1517 39 1 -2.9796 -4.0010 -1.7160 40 1 -1.3024 -4.2783 -2.2644 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000150818430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:21 Heat of formation + Delta-G solvation = 26.074273 kcal Electronic energy + Delta-G solvation = -21473.496654 eV Core-core repulsion = 18289.301728 eV Total energy + Delta-G solvation = -3184.194925 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.70567 -40.39704 -38.85736 -36.67124 -34.78592 -33.33365 -31.83003 -30.04195 -29.69646 -28.60787 -27.41213 -25.58393 -23.45447 -23.06551 -21.44919 -20.67606 -20.23968 -18.71926 -18.51374 -17.73553 -17.19817 -16.93886 -16.40715 -16.18036 -15.71639 -15.44586 -14.85004 -14.43772 -14.30309 -14.25143 -13.90500 -13.69939 -13.58464 -13.15607 -13.05579 -12.91584 -12.62247 -12.56161 -12.26168 -12.09338 -12.00560 -11.80700 -11.73649 -11.50493 -11.45404 -10.95558 -10.66329 -10.16954 -10.01810 -9.44974 -8.24072 -6.39880 0.61385 1.22303 1.35648 1.38454 1.50532 1.53012 2.25868 2.43870 2.50258 3.04671 3.24838 3.53565 3.61145 3.84996 3.92218 4.09921 4.33276 4.41700 4.46061 4.47560 4.52773 4.67233 4.69495 4.77207 4.77799 4.88701 4.95326 4.96827 5.04206 5.12454 5.18259 5.23299 5.26507 5.39395 5.44913 5.54700 5.80455 5.99151 6.02562 6.62195 6.69314 6.95100 7.23376 7.38967 8.83647 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029975 B = 0.003812 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.899498 B = 7344.417403 C = 7612.399024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.596 5.596 3 C 0.258 3.742 4 C -0.547 4.547 5 H 0.050 0.950 6 C 0.008 3.992 7 N -0.927 5.927 8 Si 0.973 3.027 9 H -0.270 1.270 10 H -0.266 1.266 11 H -0.277 1.277 12 C 0.578 3.422 13 O -0.590 6.590 14 C -0.039 4.039 15 C -0.205 4.205 16 C 0.006 3.994 17 N -0.271 5.271 18 C 0.132 3.868 19 C -0.132 4.132 20 C -0.113 4.113 21 C -0.121 4.121 22 C -0.135 4.135 23 N -0.266 5.266 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.095 0.905 27 H 0.028 0.972 28 H 0.003 0.997 29 H 0.269 0.731 30 H 0.158 0.842 31 H 0.224 0.776 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.306 -23.817 0.021 29.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.326 5.326 3 C 0.138 3.862 4 C -0.585 4.585 5 H 0.068 0.932 6 C -0.191 4.191 7 N -0.566 5.566 8 Si 0.797 3.203 9 H -0.194 1.194 10 H -0.190 1.190 11 H -0.203 1.203 12 C 0.365 3.635 13 O -0.470 6.470 14 C -0.197 4.197 15 C -0.233 4.233 16 C -0.137 4.137 17 N -0.059 5.059 18 C 0.033 3.967 19 C -0.170 4.170 20 C -0.151 4.151 21 C -0.158 4.158 22 C -0.174 4.174 23 N -0.103 5.103 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.113 0.887 27 H 0.045 0.955 28 H 0.021 0.979 29 H 0.078 0.922 30 H 0.175 0.825 31 H 0.241 0.759 32 H 0.131 0.869 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.737 -23.048 0.216 29.083 hybrid contribution 1.435 0.637 -0.682 1.712 sum -16.302 -22.411 -0.466 27.717 Atomic orbital electron populations 1.22037 0.77803 1.03429 1.02215 1.48042 1.08545 1.06160 1.69867 1.18878 0.91195 0.79659 0.96512 1.21687 1.37306 1.06858 0.92668 0.93168 1.25897 0.94618 0.96140 1.02414 1.70059 1.38695 1.14797 1.33086 0.85293 0.78083 0.78377 0.78573 1.19390 1.19043 1.20302 1.17595 0.86089 0.83035 0.76741 1.90686 1.15144 1.87516 1.53633 1.21804 0.90647 0.94824 1.12423 1.21934 1.01353 0.90304 1.09707 1.23150 0.84099 1.00597 1.05831 1.46327 1.08728 1.02686 1.48169 1.22763 0.76816 0.97641 0.99489 1.22892 1.02314 0.91281 1.00506 1.22480 0.98860 1.00394 0.93349 1.22378 1.02603 0.92847 0.97995 1.22597 1.01826 0.99497 0.93464 1.73641 1.15121 1.01597 1.19915 0.92183 0.91519 0.88669 0.95450 0.97882 0.92191 0.82472 0.75945 0.86914 0.89256 0.89310 0.89962 0.89145 0.89946 0.91010 0.89324 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.45 9.63 127.77 1.23 4.68 16 2 N -0.60 -30.07 2.86 -854.71 -2.44 -32.51 16 3 C 0.26 15.30 5.16 85.63 0.44 15.74 16 4 C -0.55 -33.79 9.39 25.60 0.24 -33.55 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 6 C 0.01 0.51 5.46 84.65 0.46 0.97 16 7 N -0.93 -58.06 13.29 21.45 0.28 -57.77 16 8 Si 0.97 46.73 29.54 68.60 2.03 48.76 16 9 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 C 0.58 29.36 7.68 86.75 0.67 30.02 16 13 O -0.59 -34.76 16.49 -3.95 -0.07 -34.82 16 14 C -0.04 -1.56 6.82 42.45 0.29 -1.27 16 15 C -0.20 -6.53 10.81 22.41 0.24 -6.29 16 16 C 0.01 0.14 10.38 83.54 0.87 1.00 16 17 N -0.27 -6.29 3.13 -323.94 -1.02 -7.31 16 18 C 0.13 1.89 3.87 45.71 0.18 2.06 16 19 C -0.13 -1.05 6.36 31.69 0.20 -0.85 16 20 C -0.11 -0.54 6.91 31.91 0.22 -0.32 16 21 C -0.12 -0.87 6.83 31.67 0.22 -0.65 16 22 C -0.14 -1.69 6.59 31.32 0.21 -1.49 16 23 N -0.27 -8.64 8.50 -48.17 -0.41 -9.05 16 24 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 25 H 0.07 2.58 8.03 -2.39 -0.02 2.56 16 26 H 0.10 3.48 5.35 -2.39 -0.01 3.46 16 27 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 28 H 0.00 0.20 7.38 -2.39 -0.02 0.19 16 29 H 0.27 15.62 8.31 -92.71 -0.77 14.84 16 30 H 0.16 4.90 8.06 -2.91 -0.02 4.88 16 31 H 0.22 2.50 6.84 -2.91 -0.02 2.48 16 32 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.09 0.64 5.86 -2.39 -0.01 0.62 16 34 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.05 0.96 7.92 -2.39 -0.02 0.94 16 Total: -1.00 -81.69 329.78 4.87 -76.82 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: 1.03 Total: 5.83 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 5.46 Total: 10.06 kcal Atomic # 7 Polarization: -103.06 SS G_CDS: -3.58 Total: -106.64 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -0.07 Total: -34.82 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -81.69 4.87 -76.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150818430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.895 kcal (2) G-P(sol) polarization free energy of solvation -81.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds