Wall clock time and date at job start Mon Mar 30 2020 02:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 110.99901 * 2 1 4 4 C 1.53008 * 109.46826 * 293.94980 * 3 2 1 5 5 C 1.50697 * 109.46932 * 180.02562 * 4 3 2 6 6 H 1.07995 * 120.00700 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99551 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00333 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99641 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47266 * 90.00156 * 9 7 5 11 11 H 1.48503 * 109.47205 * 210.00078 * 9 7 5 12 12 H 1.48495 * 109.47334 * 330.00093 * 9 7 5 13 13 C 1.46903 * 110.99973 * 123.94701 * 2 1 3 14 14 C 1.53000 * 109.46844 * 66.04710 * 13 2 1 15 15 C 1.53005 * 109.46991 * 179.97438 * 14 13 2 16 16 C 1.50707 * 109.47040 * 180.02562 * 15 14 13 17 17 N 1.30349 * 125.89459 * 270.00258 * 16 15 14 18 18 N 1.39901 * 109.20074 * 179.97438 * 17 16 15 19 19 H 0.97003 * 125.75648 * 180.25870 * 18 17 16 20 20 C 1.34934 * 108.47711 * 0.02562 * 18 17 16 21 21 N 1.38184 * 126.43866 * 180.02562 * 20 18 17 22 22 C 1.39219 * 107.11707 * 0.02562 * 20 18 17 23 23 C 1.43197 * 126.49994 * 179.97438 * 22 20 18 24 24 N 6.13457 * 123.72353 * 177.81242 * 2 1 3 25 25 H 1.09002 * 109.46797 * 296.04947 * 1 2 3 26 26 H 1.08995 * 109.47311 * 56.05263 * 1 2 3 27 27 H 1.09005 * 109.46766 * 176.05341 * 1 2 3 28 28 H 1.08994 * 109.47797 * 53.95067 * 3 2 1 29 29 H 1.09001 * 109.47239 * 173.95966 * 3 2 1 30 30 H 1.08994 * 109.47003 * 300.00572 * 4 3 2 31 31 H 1.09007 * 109.46835 * 60.00366 * 4 3 2 32 32 H 0.96996 * 119.99954 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.47394 * 306.04859 * 13 2 1 34 34 H 1.09002 * 109.47258 * 186.04629 * 13 2 1 35 35 H 1.09004 * 109.47003 * 59.99910 * 14 13 2 36 36 H 1.09001 * 109.47706 * 299.99507 * 14 13 2 37 37 H 1.08999 * 109.46617 * 60.00421 * 15 14 13 38 38 H 1.08997 * 109.47007 * 299.99968 * 15 14 13 39 39 H 0.96999 * 120.00575 * 359.97034 * 21 20 18 40 40 H 0.97001 * 119.99593 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0573 -1.3184 5 6 2.1720 3.4640 -1.3187 6 1 2.7199 3.8322 -0.4640 7 6 1.9661 4.2814 -2.4099 8 7 1.2976 3.8336 -3.4501 9 14 2.6368 6.0249 -2.4105 10 1 4.0082 6.0275 -2.9801 11 1 1.7573 6.8933 -3.2337 12 1 2.6781 6.5399 -1.0184 13 6 1.9955 -0.7659 1.1377 14 6 1.6315 -2.2425 0.9706 15 6 2.1803 -3.0403 2.1552 16 6 1.8223 -4.4949 1.9902 17 7 0.7399 -5.0705 2.4330 18 7 0.7641 -6.4254 2.0855 19 1 0.0754 -7.0762 2.2929 20 6 1.9049 -6.6730 1.4087 21 7 2.3049 -7.8904 0.8917 22 6 2.6032 -5.4712 1.3291 23 6 3.8711 -5.2629 0.6970 24 7 4.8749 -5.0986 0.1948 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5738 -0.8524 27 1 -0.3633 -1.0253 -0.0707 28 1 1.5611 1.9274 0.8308 29 1 3.0797 1.3444 0.1081 30 1 2.0658 1.5014 -2.1492 31 1 0.5471 2.0844 -1.4266 32 1 1.1531 4.4085 -4.2179 33 1 1.5611 -0.3871 2.0629 34 1 3.0798 -0.6610 1.1757 35 1 2.0658 -2.6213 0.0453 36 1 0.5472 -2.3475 0.9326 37 1 1.7462 -2.6616 3.0805 38 1 3.2646 -2.9354 2.1927 39 1 1.7422 -8.6728 1.0023 40 1 3.1484 -7.9627 0.4182 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153272003.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:46 Heat of formation + Delta-G solvation = 88.533601 kcal Electronic energy + Delta-G solvation = -20216.834832 eV Core-core repulsion = 17067.641097 eV Total energy + Delta-G solvation = -3149.193734 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.70135 -37.50692 -36.43870 -35.72794 -34.10332 -32.87255 -31.24654 -29.46839 -29.11036 -26.81380 -25.55636 -23.34587 -22.95861 -20.91027 -20.36215 -19.75627 -19.22151 -17.86442 -16.59140 -16.38673 -15.63205 -15.59251 -15.05346 -14.82796 -14.47274 -14.00297 -13.74863 -13.23982 -13.12067 -13.07432 -12.64528 -12.54603 -12.31784 -11.98016 -11.81293 -11.43379 -11.28190 -11.07404 -10.98666 -10.87436 -10.77202 -10.47587 -10.29761 -9.76519 -9.55070 -9.24634 -9.04738 -8.30499 -8.26742 -7.60948 -5.93467 -3.95438 1.39060 1.92442 1.98352 2.69511 3.18877 3.36689 3.42465 3.45771 3.51667 3.94608 4.43810 4.54548 4.56948 4.71578 5.03067 5.23051 5.37667 5.41169 5.42309 5.64335 5.78119 5.83829 5.93038 5.97994 6.07017 6.22930 6.31865 6.38606 6.41629 6.58834 6.64509 6.68866 6.96684 7.06454 7.36102 7.60511 7.64957 7.67722 7.88390 7.98985 8.16645 8.50950 9.12113 9.67743 11.18021 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.031970 B = 0.002674 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.618596 B =10469.632689 C =10799.172197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.543 5.543 3 C 0.063 3.937 4 C 0.027 3.973 5 C -0.520 4.520 6 H 0.054 0.946 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.055 3.945 14 C -0.108 4.108 15 C -0.048 4.048 16 C 0.169 3.831 17 N -0.292 5.292 18 N -0.492 5.492 19 H 0.442 0.558 20 C 0.427 3.573 21 N -0.839 5.839 22 C -0.257 4.257 23 C 0.294 3.706 24 N -0.441 5.441 25 H 0.016 0.984 26 H 0.076 0.924 27 H 0.057 0.943 28 H 0.019 0.981 29 H 0.060 0.940 30 H 0.024 0.976 31 H 0.017 0.983 32 H 0.260 0.740 33 H 0.028 0.972 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.407 0.593 40 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.192 -25.808 12.830 28.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.267 5.267 3 C -0.064 4.064 4 C -0.010 4.010 5 C -0.559 4.559 6 H 0.072 0.928 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.073 4.073 14 C -0.147 4.147 15 C -0.088 4.088 16 C -0.003 4.003 17 N -0.112 5.112 18 N -0.205 5.205 19 H 0.287 0.713 20 C 0.190 3.810 21 N -0.387 5.387 22 C -0.278 4.278 23 C -0.020 4.020 24 N -0.119 5.119 25 H 0.035 0.965 26 H 0.095 0.905 27 H 0.076 0.924 28 H 0.037 0.963 29 H 0.078 0.922 30 H 0.043 0.957 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.237 0.763 40 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -1.667 -25.495 12.119 28.278 hybrid contribution 0.066 0.312 0.344 0.469 sum -1.601 -25.183 12.463 28.144 Atomic orbital electron populations 1.22414 0.88215 1.00937 1.00812 1.62056 1.07560 1.15925 1.41189 1.22337 0.98508 0.85249 1.00290 1.19105 0.96888 0.93977 0.91064 1.21212 1.34966 0.97859 1.01897 0.92817 1.24998 0.95335 0.98437 0.95609 1.69974 1.40852 1.36434 1.06056 0.86603 0.78859 0.84649 0.77928 1.20657 1.21272 1.19946 1.22077 1.00154 0.92833 0.92254 1.21534 1.01441 0.94339 0.97339 1.20183 1.02112 0.85789 1.00672 1.22169 0.89762 0.96151 0.92252 1.77241 1.21583 0.86254 1.26105 1.45867 1.17060 1.10021 1.47552 0.71270 1.17938 0.86901 0.87039 0.89164 1.41533 1.27176 1.06494 1.63516 1.15128 0.96624 0.92712 1.23323 1.24297 0.91338 0.94243 0.92147 1.81246 1.12134 1.06606 1.11930 0.96500 0.90486 0.92386 0.96285 0.92192 0.95747 0.96441 0.93052 0.95353 0.91095 0.90823 0.91334 0.89464 0.89585 0.76289 0.74579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.13 60.07 0.55 0.98 16 2 N -0.54 -10.29 4.76 -242.91 -1.16 -11.45 16 3 C 0.06 1.38 4.90 -3.82 -0.02 1.36 16 4 C 0.03 0.73 4.90 -27.88 -0.14 0.59 16 5 C -0.52 -15.13 9.11 -34.44 -0.31 -15.45 16 6 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -27.48 13.29 55.43 0.74 -26.75 16 9 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.06 0.83 4.96 -3.82 -0.02 0.81 16 14 C -0.11 -1.36 5.12 -26.73 -0.14 -1.50 16 15 C -0.05 -0.50 5.59 -27.88 -0.16 -0.65 16 16 C 0.17 1.76 6.51 -82.01 -0.53 1.22 16 17 N -0.29 -2.88 12.61 33.91 0.43 -2.45 16 18 N -0.49 -3.09 7.32 31.44 0.23 -2.86 16 19 H 0.44 1.18 8.96 -182.75 -1.64 -0.45 16 20 C 0.43 2.83 8.44 -153.57 -1.30 1.54 16 21 N -0.84 -2.46 9.06 31.43 0.28 -2.17 16 22 C -0.26 -2.53 6.01 -106.40 -0.64 -3.17 16 23 C 0.29 3.48 15.21 -22.53 -0.34 3.14 16 24 N -0.44 -6.26 18.53 41.77 0.77 -5.48 16 25 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.08 1.50 6.30 -51.93 -0.33 1.18 16 27 H 0.06 0.88 6.47 -51.93 -0.34 0.54 16 28 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 29 H 0.06 1.30 7.93 -51.93 -0.41 0.89 16 30 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.02 0.49 6.47 -51.93 -0.34 0.15 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 34 H 0.07 1.05 7.93 -51.93 -0.41 0.64 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.87 6.55 -51.93 -0.34 0.53 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.87 7.98 -51.93 -0.41 0.45 16 39 H 0.41 -0.07 8.95 -40.82 -0.37 -0.43 16 40 H 0.42 1.21 8.68 -40.82 -0.35 0.85 16 LS Contribution 342.85 15.07 5.17 5.17 Total: -1.00 -35.32 342.85 -8.71 -44.03 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -7.01 Total: -5.58 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -3.14 Total: -9.54 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 1.30 Total: -51.16 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.32 -8.71 -44.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153272003.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.562 kcal (2) G-P(sol) polarization free energy of solvation -35.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds