Wall clock time and date at job start Mon Mar 30 2020 02:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 110.99901 * 2 1 4 4 C 1.53008 * 109.46826 * 293.94980 * 3 2 1 5 5 C 1.50697 * 109.46932 * 180.02562 * 4 3 2 6 6 H 1.07995 * 120.00700 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99551 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00333 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99641 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47266 * 90.00156 * 9 7 5 11 11 H 1.48503 * 109.47205 * 210.00078 * 9 7 5 12 12 H 1.48495 * 109.47334 * 330.00093 * 9 7 5 13 13 C 1.46903 * 110.99973 * 123.94701 * 2 1 3 14 14 C 1.53000 * 109.46844 * 66.04710 * 13 2 1 15 15 C 1.53005 * 109.46991 * 179.97438 * 14 13 2 16 16 C 1.50707 * 109.47040 * 180.02562 * 15 14 13 17 17 N 1.30349 * 125.89459 * 270.00258 * 16 15 14 18 18 N 1.39901 * 109.20074 * 179.97438 * 17 16 15 19 19 H 0.97003 * 125.75648 * 180.25870 * 18 17 16 20 20 C 1.34934 * 108.47711 * 0.02562 * 18 17 16 21 21 N 1.38184 * 126.43866 * 180.02562 * 20 18 17 22 22 C 1.39219 * 107.11707 * 0.02562 * 20 18 17 23 23 C 1.43197 * 126.49994 * 179.97438 * 22 20 18 24 24 N 6.13457 * 123.72353 * 177.81242 * 2 1 3 25 25 H 1.09002 * 109.46797 * 296.04947 * 1 2 3 26 26 H 1.08995 * 109.47311 * 56.05263 * 1 2 3 27 27 H 1.09005 * 109.46766 * 176.05341 * 1 2 3 28 28 H 1.08994 * 109.47797 * 53.95067 * 3 2 1 29 29 H 1.09001 * 109.47239 * 173.95966 * 3 2 1 30 30 H 1.08994 * 109.47003 * 300.00572 * 4 3 2 31 31 H 1.09007 * 109.46835 * 60.00366 * 4 3 2 32 32 H 0.96996 * 119.99954 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.47394 * 306.04859 * 13 2 1 34 34 H 1.09002 * 109.47258 * 186.04629 * 13 2 1 35 35 H 1.09004 * 109.47003 * 59.99910 * 14 13 2 36 36 H 1.09001 * 109.47706 * 299.99507 * 14 13 2 37 37 H 1.08999 * 109.46617 * 60.00421 * 15 14 13 38 38 H 1.08997 * 109.47007 * 299.99968 * 15 14 13 39 39 H 0.96999 * 120.00575 * 359.97034 * 21 20 18 40 40 H 0.97001 * 119.99593 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0573 -1.3184 5 6 2.1720 3.4640 -1.3187 6 1 2.7199 3.8322 -0.4640 7 6 1.9661 4.2814 -2.4099 8 7 1.2976 3.8336 -3.4501 9 14 2.6368 6.0249 -2.4105 10 1 4.0082 6.0275 -2.9801 11 1 1.7573 6.8933 -3.2337 12 1 2.6781 6.5399 -1.0184 13 6 1.9955 -0.7659 1.1377 14 6 1.6315 -2.2425 0.9706 15 6 2.1803 -3.0403 2.1552 16 6 1.8223 -4.4949 1.9902 17 7 0.7399 -5.0705 2.4330 18 7 0.7641 -6.4254 2.0855 19 1 0.0754 -7.0762 2.2929 20 6 1.9049 -6.6730 1.4087 21 7 2.3049 -7.8904 0.8917 22 6 2.6032 -5.4712 1.3291 23 6 3.8711 -5.2629 0.6970 24 7 4.8749 -5.0986 0.1948 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5738 -0.8524 27 1 -0.3633 -1.0253 -0.0707 28 1 1.5611 1.9274 0.8308 29 1 3.0797 1.3444 0.1081 30 1 2.0658 1.5014 -2.1492 31 1 0.5471 2.0844 -1.4266 32 1 1.1531 4.4085 -4.2179 33 1 1.5611 -0.3871 2.0629 34 1 3.0798 -0.6610 1.1757 35 1 2.0658 -2.6213 0.0453 36 1 0.5472 -2.3475 0.9326 37 1 1.7462 -2.6616 3.0805 38 1 3.2646 -2.9354 2.1927 39 1 1.7422 -8.6728 1.0023 40 1 3.1484 -7.9627 0.4182 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153272003.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:45 Heat of formation + Delta-G solvation = 62.770332 kcal Electronic energy + Delta-G solvation = -20217.952011 eV Core-core repulsion = 17067.641097 eV Total energy + Delta-G solvation = -3150.310914 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.33709 -38.93477 -37.37560 -36.42003 -35.40369 -34.52935 -32.37780 -31.02382 -29.89471 -28.06030 -27.24576 -25.00684 -23.61139 -22.28621 -21.46498 -21.08366 -19.84603 -18.57605 -18.37386 -17.17932 -16.58483 -16.53917 -16.37737 -16.18524 -15.98956 -15.30712 -15.09516 -14.35699 -14.16443 -14.12878 -14.09258 -13.96397 -13.47898 -13.25296 -13.15755 -12.89232 -12.74116 -12.54269 -12.49300 -12.22399 -12.02454 -11.75718 -11.68089 -11.36672 -11.28105 -11.16587 -10.52395 -10.16418 -9.10978 -8.90711 -8.18448 -6.29713 0.78548 1.14541 1.40768 1.42904 1.48081 1.53738 1.82027 2.41627 2.65646 2.77718 3.13720 3.14753 3.25263 3.85703 3.89147 4.15190 4.29879 4.33010 4.41438 4.50655 4.56055 4.68004 4.71584 4.75607 4.91218 4.91437 5.05969 5.14361 5.26984 5.30018 5.41350 5.50126 5.69634 5.76184 5.81730 6.13780 6.24482 6.36979 6.39347 6.62567 6.78874 6.81248 6.87830 7.39116 8.93902 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.031970 B = 0.002674 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.618596 B =10469.632689 C =10799.172197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.561 5.561 3 C 0.079 3.921 4 C 0.035 3.965 5 C -0.544 4.544 6 H 0.060 0.940 7 C -0.001 4.001 8 N -0.933 5.933 9 Si 0.968 3.032 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.262 1.262 13 C 0.056 3.944 14 C -0.095 4.095 15 C -0.042 4.042 16 C 0.161 3.839 17 N -0.309 5.309 18 N -0.477 5.477 19 H 0.459 0.541 20 C 0.450 3.550 21 N -0.817 5.817 22 C -0.289 4.289 23 C 0.316 3.684 24 N -0.495 5.495 25 H 0.028 0.972 26 H 0.047 0.953 27 H 0.083 0.917 28 H 0.022 0.978 29 H 0.061 0.939 30 H -0.011 1.011 31 H -0.004 1.004 32 H 0.264 0.736 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.426 0.574 40 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.523 -26.851 14.411 30.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.285 5.285 3 C -0.048 4.048 4 C -0.003 4.003 5 C -0.583 4.583 6 H 0.079 0.921 7 C -0.198 4.198 8 N -0.573 5.573 9 Si 0.792 3.208 10 H -0.198 1.198 11 H -0.206 1.206 12 H -0.186 1.186 13 C -0.071 4.071 14 C -0.134 4.134 15 C -0.082 4.082 16 C -0.011 4.011 17 N -0.129 5.129 18 N -0.193 5.193 19 H 0.308 0.692 20 C 0.209 3.791 21 N -0.366 5.366 22 C -0.311 4.311 23 C 0.003 3.997 24 N -0.174 5.174 25 H 0.046 0.954 26 H 0.066 0.934 27 H 0.102 0.898 28 H 0.041 0.959 29 H 0.079 0.921 30 H 0.007 0.993 31 H 0.015 0.985 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.119 0.881 38 H 0.104 0.896 39 H 0.259 0.741 40 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -2.019 -26.605 13.720 30.003 hybrid contribution 0.085 0.472 -0.146 0.501 sum -1.934 -26.133 13.574 29.512 Atomic orbital electron populations 1.22369 0.87383 1.02134 1.00019 1.61965 1.08498 1.14256 1.43784 1.21971 0.98613 0.86888 0.97376 1.18941 0.95104 0.93658 0.92569 1.21647 1.35245 0.98985 1.02382 0.92144 1.25993 0.95437 1.03367 0.95049 1.70116 1.42007 1.38341 1.06822 0.85415 0.78230 0.78628 0.78559 1.19826 1.20640 1.18612 1.22155 1.00112 0.93597 0.91287 1.21368 1.01420 0.92906 0.97664 1.20077 1.02094 0.85963 1.00046 1.22088 0.90171 0.96110 0.92778 1.77155 1.21398 0.87863 1.26488 1.45769 1.17322 1.09300 1.46956 0.69196 1.17834 0.86181 0.87246 0.87846 1.41595 1.27355 1.05867 1.61825 1.15222 0.96503 0.94222 1.25108 1.24556 0.91253 0.92848 0.91044 1.81255 1.13802 1.08213 1.14104 0.95363 0.93448 0.89824 0.95939 0.92096 0.99294 0.98543 0.92774 0.93784 0.91116 0.92636 0.91144 0.88055 0.89604 0.74102 0.74148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 9.13 127.69 1.17 2.17 16 2 N -0.56 -21.27 4.76 -922.43 -4.39 -25.67 16 3 C 0.08 3.52 4.90 86.31 0.42 3.94 16 4 C 0.03 1.94 4.90 29.85 0.15 2.08 16 5 C -0.54 -32.13 9.11 25.60 0.23 -31.89 16 6 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 7 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 8 N -0.93 -58.59 13.29 21.45 0.28 -58.30 16 9 Si 0.97 45.43 29.54 68.60 2.03 47.46 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 12 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 13 C 0.06 1.62 4.96 86.30 0.43 2.05 16 14 C -0.09 -2.31 5.12 30.60 0.16 -2.15 16 15 C -0.04 -0.82 5.59 29.85 0.17 -0.65 16 16 C 0.16 3.12 6.51 43.56 0.28 3.40 16 17 N -0.31 -5.46 12.61 -46.64 -0.59 -6.04 16 18 N -0.48 -4.73 7.32 -54.45 -0.40 -5.12 16 19 H 0.46 1.01 8.96 -213.44 -1.91 -0.90 16 20 C 0.45 4.90 8.44 132.59 1.12 6.02 16 21 N -0.82 -2.51 9.06 -54.47 -0.49 -3.01 16 22 C -0.29 -5.32 6.01 -21.02 -0.13 -5.45 16 23 C 0.32 7.41 15.21 88.35 1.34 8.75 16 24 N -0.49 -14.26 18.53 18.98 0.35 -13.91 16 25 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.05 1.91 6.30 -2.39 -0.02 1.89 16 27 H 0.08 2.44 6.47 -2.38 -0.02 2.42 16 28 H 0.02 0.98 8.12 -2.39 -0.02 0.96 16 29 H 0.06 2.66 7.93 -2.39 -0.02 2.65 16 30 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 31 H 0.00 -0.22 6.47 -2.38 -0.02 -0.24 16 32 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 33 H 0.04 1.16 8.12 -2.39 -0.02 1.14 16 34 H 0.07 2.05 7.93 -2.39 -0.02 2.03 16 35 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.07 1.69 6.55 -2.39 -0.02 1.67 16 37 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.09 1.67 7.98 -2.39 -0.02 1.65 16 39 H 0.43 -1.61 8.95 -92.71 -0.83 -2.44 16 40 H 0.43 1.44 8.68 -92.71 -0.80 0.64 16 Total: -1.00 -77.94 342.85 0.14 -77.80 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -2.46 Total: -1.90 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 5.80 Total: -11.32 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -5.24 Total: -112.05 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -77.94 0.14 -77.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153272003.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.574 kcal (2) G-P(sol) polarization free energy of solvation -77.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds