Wall clock time and date at job start Mon Mar 30 2020 02:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31352 * 1 3 3 Si 1.86799 * 120.00250 * 2 1 4 4 H 1.48497 * 109.47001 * 269.99984 * 3 2 1 5 5 H 1.48505 * 109.47267 * 29.99606 * 3 2 1 6 6 H 1.48490 * 109.47452 * 149.99736 * 3 2 1 7 7 C 1.39077 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00022 * 202.80626 * 7 2 1 9 9 N 1.36813 * 119.99892 * 22.80997 * 7 2 1 10 10 C 1.34776 * 120.00466 * 211.28187 * 9 7 2 11 11 O 1.21654 * 120.00333 * 184.61995 * 10 9 7 12 12 C 1.46955 * 119.99515 * 4.61639 * 10 9 7 13 13 C 1.31697 * 119.85540 * 197.37676 * 12 10 9 14 14 C 1.51411 * 120.28538 * 180.02562 * 13 12 10 15 15 C 1.53037 * 108.56990 * 288.43013 * 14 13 12 16 16 C 1.51779 * 110.80916 * 85.71405 * 15 14 13 17 17 C 1.51777 * 113.86139 * 293.03138 * 16 15 14 18 18 C 1.51459 * 119.89240 * 17.42556 * 12 10 9 19 19 C 1.46500 * 120.00015 * 31.28036 * 9 7 2 20 20 C 1.54268 * 110.03483 * 240.89627 * 19 9 7 21 21 C 1.54959 * 104.16359 * 217.13409 * 20 19 9 22 22 C 1.54895 * 102.77483 * 37.89059 * 21 20 19 23 23 C 1.53878 * 110.03462 * 123.68129 * 19 9 7 24 24 H 0.96997 * 119.99793 * 4.96189 * 1 2 3 25 25 H 1.08003 * 119.85543 * 0.02562 * 13 12 10 26 26 H 1.09003 * 109.61588 * 168.70940 * 14 13 12 27 27 H 1.08998 * 109.77585 * 48.24927 * 14 13 12 28 28 H 1.08996 * 109.20932 * 325.37606 * 15 14 13 29 29 H 1.08994 * 109.21287 * 206.05717 * 15 14 13 30 30 H 1.09000 * 108.60215 * 171.89972 * 16 15 14 31 31 H 1.09003 * 108.60510 * 54.16372 * 16 15 14 32 32 H 1.08995 * 109.21313 * 187.31048 * 17 16 15 33 33 H 1.09003 * 109.20743 * 306.67488 * 17 16 15 34 34 H 1.08995 * 109.66974 * 131.85107 * 18 12 10 35 35 H 1.09008 * 109.59982 * 11.28251 * 18 12 10 36 36 H 1.09006 * 110.01935 * 2.28824 * 19 9 7 37 37 H 1.08996 * 110.48470 * 335.78679 * 20 19 9 38 38 H 1.09003 * 110.48376 * 98.42357 * 20 19 9 39 39 H 1.09000 * 110.72257 * 279.57882 * 21 20 19 40 40 H 1.09006 * 110.92492 * 156.29400 * 21 20 19 41 41 H 1.09006 * 110.48535 * 203.40563 * 22 21 20 42 42 H 1.08996 * 110.60114 * 80.81743 * 22 21 20 43 43 H 1.09001 * 110.03194 * 238.57503 * 23 19 9 44 44 H 1.09005 * 110.02874 * 359.94935 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 2.4951 2.0463 -1.4001 5 1 1.4450 2.6527 0.7000 6 1 3.5450 1.4402 0.7000 7 6 2.0089 -1.2044 0.0005 8 1 3.0255 -1.2409 0.3631 9 7 1.4051 -2.3431 -0.4583 10 6 1.7342 -3.5395 0.0679 11 8 1.2604 -4.5593 -0.3963 12 6 2.6653 -3.6119 1.2025 13 6 3.2517 -4.7536 1.4975 14 6 4.2124 -4.8394 2.6647 15 6 5.5000 -4.1013 2.2914 16 6 5.3783 -2.6187 2.5929 17 6 4.3672 -1.8959 1.7217 18 6 2.9463 -2.3740 2.0287 19 6 0.4006 -2.2621 -1.5217 20 6 -0.9525 -2.8006 -1.0127 21 6 -1.5491 -3.5430 -2.2351 22 6 -0.3036 -4.2056 -2.8748 23 6 0.8129 -3.1547 -2.7054 24 1 -0.4850 0.8369 -0.0727 25 1 3.0465 -5.6325 0.9043 26 1 4.4380 -5.8845 2.8768 27 1 3.7663 -4.3755 3.5443 28 1 5.6951 -4.2360 1.2276 29 1 6.3300 -4.5165 2.8629 30 1 6.3541 -2.1540 2.4520 31 1 5.0869 -2.4988 3.6364 32 1 4.4335 -0.8243 1.9091 33 1 4.5927 -2.0913 0.6733 34 1 2.8616 -2.6133 3.0887 35 1 2.2329 -1.5916 1.7693 36 1 0.2906 -1.2295 -1.8532 37 1 -0.8005 -3.4918 -0.1837 38 1 -1.6012 -1.9783 -0.7110 39 1 -2.0099 -2.8382 -2.9272 40 1 -2.2687 -4.2982 -1.9188 41 1 -0.4796 -4.4083 -3.9313 42 1 -0.0454 -5.1247 -2.3488 43 1 0.9023 -2.5554 -3.6115 44 1 1.7608 -3.6474 -2.4890 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154003746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:34 Heat of formation + Delta-G solvation = -18.925618 kcal Electronic energy + Delta-G solvation = -23529.936356 eV Core-core repulsion = 20447.330433 eV Total energy + Delta-G solvation = -3082.605923 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.56799 -37.70646 -35.79781 -34.55324 -31.78829 -31.59776 -31.12838 -27.70220 -26.97968 -25.63293 -24.11222 -23.47188 -20.88667 -19.97001 -19.76861 -18.73936 -18.09437 -16.57984 -15.59677 -15.02980 -14.78343 -14.53128 -14.29700 -13.96309 -13.66549 -13.21359 -13.06877 -12.88491 -12.53628 -12.44485 -12.19279 -11.70884 -11.28683 -11.20605 -11.00390 -10.95432 -10.75630 -10.41312 -10.38366 -10.32271 -10.26049 -10.12008 -10.09315 -10.01016 -9.70078 -9.68880 -9.59543 -8.73106 -8.27024 -8.08570 -7.47947 -6.43054 -3.92747 2.46153 3.11679 3.20602 3.20635 4.07561 4.42647 4.77999 5.01706 5.17449 5.26660 5.30615 5.62419 5.65277 5.69624 5.76240 5.80830 5.89798 5.98494 6.03449 6.12352 6.22781 6.28932 6.39564 6.40823 6.46025 6.56661 6.58467 6.61192 6.62734 6.68051 6.72479 6.78115 6.80956 6.97202 7.02141 7.14384 7.23935 7.35071 7.37744 7.47070 7.51393 7.73045 7.90693 8.43860 9.06270 9.58278 10.01190 10.59270 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.009137 C = 0.006026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.542365 B = 3063.730145 C = 4645.264847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.040 3.960 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.345 4.345 8 H 0.118 0.882 9 N -0.426 5.426 10 C 0.493 3.507 11 O -0.600 6.600 12 C -0.114 4.114 13 C -0.141 4.141 14 C -0.083 4.083 15 C -0.111 4.111 16 C -0.116 4.116 17 C -0.108 4.108 18 C -0.113 4.113 19 C 0.164 3.836 20 C -0.109 4.109 21 C -0.122 4.122 22 C -0.111 4.111 23 C -0.127 4.127 24 H 0.269 0.731 25 H 0.111 0.889 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.136 0.864 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.042 0.958 42 H 0.073 0.927 43 H 0.045 0.955 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.115 -2.331 1.685 5.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.167 4.167 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.472 4.472 8 H 0.135 0.865 9 N -0.142 5.142 10 C 0.284 3.716 11 O -0.488 6.488 12 C -0.117 4.117 13 C -0.162 4.162 14 C -0.121 4.121 15 C -0.148 4.148 16 C -0.154 4.154 17 C -0.145 4.145 18 C -0.150 4.150 19 C 0.060 3.940 20 C -0.148 4.148 21 C -0.160 4.160 22 C -0.149 4.149 23 C -0.165 4.165 24 H 0.079 0.921 25 H 0.129 0.871 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.154 0.846 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.091 0.909 43 H 0.063 0.937 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.707 -2.617 1.500 5.590 hybrid contribution 0.394 0.979 -0.045 1.056 sum 5.101 -1.637 1.455 5.552 Atomic orbital electron populations 1.70057 1.06062 1.28113 1.43998 1.25301 0.95044 0.99550 0.96786 0.86349 0.80076 0.82305 0.78669 1.20321 1.20988 1.19002 1.20227 0.98792 0.85697 1.42494 0.86471 1.43538 1.35261 1.05189 1.30252 1.18258 0.85214 0.83938 0.84221 1.90599 1.59046 1.35011 1.64114 1.21351 0.97329 0.95737 0.97241 1.22916 0.97296 0.97745 0.98229 1.20742 0.94705 0.99701 0.96903 1.21243 0.96613 0.95401 1.01578 1.21168 0.98989 0.95205 1.00011 1.21227 0.94505 0.99043 0.99747 1.21685 0.98294 0.98474 0.96518 1.21358 0.87395 0.99077 0.86164 1.22446 0.96491 0.98932 0.96885 1.22439 0.96965 0.98584 0.98041 1.22205 0.95080 0.99431 0.98175 1.22440 0.99399 0.97100 0.97567 0.92092 0.87096 0.92159 0.91307 0.92023 0.92624 0.93157 0.92748 0.92067 0.91808 0.93462 0.84623 0.88973 0.91775 0.91386 0.92844 0.92951 0.93890 0.90870 0.93671 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.03 11.13 55.50 0.62 -20.41 16 2 C 0.04 0.95 4.69 -17.45 -0.08 0.87 16 3 Si 0.90 18.54 29.61 -169.99 -5.03 13.51 16 4 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.34 -8.21 6.08 -15.02 -0.09 -8.30 16 8 H 0.12 2.64 3.19 -52.49 -0.17 2.47 16 9 N -0.43 -10.34 2.52 -107.92 -0.27 -10.62 16 10 C 0.49 11.93 6.32 -12.73 -0.08 11.85 16 11 O -0.60 -15.37 12.24 5.23 0.06 -15.31 16 12 C -0.11 -2.39 4.91 -102.60 -0.50 -2.89 16 13 C -0.14 -2.64 8.91 -35.84 -0.32 -2.96 16 14 C -0.08 -1.23 5.62 -27.51 -0.15 -1.38 16 15 C -0.11 -1.51 5.66 -27.33 -0.15 -1.67 16 16 C -0.12 -1.63 5.27 -27.97 -0.15 -1.78 16 17 C -0.11 -1.83 4.09 -27.33 -0.11 -1.94 16 18 C -0.11 -2.19 4.56 -27.49 -0.13 -2.32 16 19 C 0.16 3.83 2.32 -66.81 -0.15 3.68 16 20 C -0.11 -2.46 5.90 -25.03 -0.15 -2.61 16 21 C -0.12 -2.34 6.91 -24.70 -0.17 -2.51 16 22 C -0.11 -2.16 6.40 -25.07 -0.16 -2.32 16 23 C -0.13 -2.69 5.74 -25.61 -0.15 -2.84 16 24 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 25 H 0.11 2.18 7.55 -52.48 -0.40 1.78 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 1.01 6.76 -51.93 -0.35 0.66 16 28 H 0.06 0.90 7.85 -51.93 -0.41 0.49 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.72 7.88 -51.93 -0.41 0.32 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.17 7.13 -51.93 -0.37 0.80 16 34 H 0.05 0.85 6.74 -51.93 -0.35 0.50 16 35 H 0.14 3.02 4.59 -51.93 -0.24 2.78 16 36 H 0.09 2.28 6.23 -51.93 -0.32 1.96 16 37 H 0.06 1.60 6.52 -51.93 -0.34 1.26 16 38 H 0.07 1.57 7.76 -51.93 -0.40 1.17 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.55 7.17 -51.93 -0.37 1.17 16 43 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.06 1.48 6.77 -51.93 -0.35 1.12 16 LS Contribution 319.77 15.07 4.82 4.82 Total: -1.00 -25.91 319.77 -9.35 -35.26 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -7.00 Total: 9.87 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -2.55 Total: -17.12 kcal Atomic # 7 Polarization: -31.37 SS G_CDS: 0.35 Total: -31.03 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.06 Total: -15.31 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -25.91 -9.35 -35.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154003746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.339 kcal (2) G-P(sol) polarization free energy of solvation -25.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds