Wall clock time and date at job start Mon Mar 30 2020 02:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31352 * 1 3 3 Si 1.86799 * 120.00250 * 2 1 4 4 H 1.48497 * 109.47001 * 269.99984 * 3 2 1 5 5 H 1.48505 * 109.47267 * 29.99606 * 3 2 1 6 6 H 1.48490 * 109.47452 * 149.99736 * 3 2 1 7 7 C 1.39077 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00022 * 202.80626 * 7 2 1 9 9 N 1.36813 * 119.99892 * 22.80997 * 7 2 1 10 10 C 1.34776 * 120.00466 * 211.28187 * 9 7 2 11 11 O 1.21654 * 120.00333 * 184.61995 * 10 9 7 12 12 C 1.46955 * 119.99515 * 4.61639 * 10 9 7 13 13 C 1.31697 * 119.85540 * 197.37676 * 12 10 9 14 14 C 1.51411 * 120.28538 * 180.02562 * 13 12 10 15 15 C 1.53037 * 108.56990 * 288.43013 * 14 13 12 16 16 C 1.51779 * 110.80916 * 85.71405 * 15 14 13 17 17 C 1.51777 * 113.86139 * 293.03138 * 16 15 14 18 18 C 1.51459 * 119.89240 * 17.42556 * 12 10 9 19 19 C 1.46500 * 120.00015 * 31.28036 * 9 7 2 20 20 C 1.54268 * 110.03483 * 240.89627 * 19 9 7 21 21 C 1.54959 * 104.16359 * 217.13409 * 20 19 9 22 22 C 1.54895 * 102.77483 * 37.89059 * 21 20 19 23 23 C 1.53878 * 110.03462 * 123.68129 * 19 9 7 24 24 H 0.96997 * 119.99793 * 4.96189 * 1 2 3 25 25 H 1.08003 * 119.85543 * 0.02562 * 13 12 10 26 26 H 1.09003 * 109.61588 * 168.70940 * 14 13 12 27 27 H 1.08998 * 109.77585 * 48.24927 * 14 13 12 28 28 H 1.08996 * 109.20932 * 325.37606 * 15 14 13 29 29 H 1.08994 * 109.21287 * 206.05717 * 15 14 13 30 30 H 1.09000 * 108.60215 * 171.89972 * 16 15 14 31 31 H 1.09003 * 108.60510 * 54.16372 * 16 15 14 32 32 H 1.08995 * 109.21313 * 187.31048 * 17 16 15 33 33 H 1.09003 * 109.20743 * 306.67488 * 17 16 15 34 34 H 1.08995 * 109.66974 * 131.85107 * 18 12 10 35 35 H 1.09008 * 109.59982 * 11.28251 * 18 12 10 36 36 H 1.09006 * 110.01935 * 2.28824 * 19 9 7 37 37 H 1.08996 * 110.48470 * 335.78679 * 20 19 9 38 38 H 1.09003 * 110.48376 * 98.42357 * 20 19 9 39 39 H 1.09000 * 110.72257 * 279.57882 * 21 20 19 40 40 H 1.09006 * 110.92492 * 156.29400 * 21 20 19 41 41 H 1.09006 * 110.48535 * 203.40563 * 22 21 20 42 42 H 1.08996 * 110.60114 * 80.81743 * 22 21 20 43 43 H 1.09001 * 110.03194 * 238.57503 * 23 19 9 44 44 H 1.09005 * 110.02874 * 359.94935 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 2.4951 2.0463 -1.4001 5 1 1.4450 2.6527 0.7000 6 1 3.5450 1.4402 0.7000 7 6 2.0089 -1.2044 0.0005 8 1 3.0255 -1.2409 0.3631 9 7 1.4051 -2.3431 -0.4583 10 6 1.7342 -3.5395 0.0679 11 8 1.2604 -4.5593 -0.3963 12 6 2.6653 -3.6119 1.2025 13 6 3.2517 -4.7536 1.4975 14 6 4.2124 -4.8394 2.6647 15 6 5.5000 -4.1013 2.2914 16 6 5.3783 -2.6187 2.5929 17 6 4.3672 -1.8959 1.7217 18 6 2.9463 -2.3740 2.0287 19 6 0.4006 -2.2621 -1.5217 20 6 -0.9525 -2.8006 -1.0127 21 6 -1.5491 -3.5430 -2.2351 22 6 -0.3036 -4.2056 -2.8748 23 6 0.8129 -3.1547 -2.7054 24 1 -0.4850 0.8369 -0.0727 25 1 3.0465 -5.6325 0.9043 26 1 4.4380 -5.8845 2.8768 27 1 3.7663 -4.3755 3.5443 28 1 5.6951 -4.2360 1.2276 29 1 6.3300 -4.5165 2.8629 30 1 6.3541 -2.1540 2.4520 31 1 5.0869 -2.4988 3.6364 32 1 4.4335 -0.8243 1.9091 33 1 4.5927 -2.0913 0.6733 34 1 2.8616 -2.6133 3.0887 35 1 2.2329 -1.5916 1.7693 36 1 0.2906 -1.2295 -1.8532 37 1 -0.8005 -3.4918 -0.1837 38 1 -1.6012 -1.9783 -0.7110 39 1 -2.0099 -2.8382 -2.9272 40 1 -2.2687 -4.2982 -1.9188 41 1 -0.4796 -4.4083 -3.9313 42 1 -0.0454 -5.1247 -2.3488 43 1 0.9023 -2.5554 -3.6115 44 1 1.7608 -3.6474 -2.4890 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154003746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:33 Heat of formation + Delta-G solvation = -30.312409 kcal Electronic energy + Delta-G solvation = -23530.430125 eV Core-core repulsion = 20447.330433 eV Total energy + Delta-G solvation = -3083.099692 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.30395 -39.18144 -37.52776 -36.31546 -33.40999 -33.10154 -32.64327 -29.43629 -28.68279 -27.26764 -25.68815 -24.88975 -22.56709 -21.46211 -21.17497 -20.55194 -19.78547 -18.19458 -17.33074 -16.70491 -16.34581 -16.21783 -15.80865 -15.49291 -15.33553 -14.77951 -14.50647 -14.45396 -14.07148 -13.98393 -13.75191 -13.36437 -12.88386 -12.70643 -12.60551 -12.53346 -12.35306 -12.04754 -11.90911 -11.83149 -11.75448 -11.73082 -11.59406 -11.43109 -11.33727 -11.29242 -11.17949 -10.51905 -10.06729 -9.67492 -9.32396 -8.25279 -5.79349 0.83787 1.46639 1.50043 1.57846 2.34281 2.62792 3.05756 3.22177 3.92025 3.93553 3.97522 4.07415 4.12003 4.18392 4.35058 4.37777 4.48207 4.63205 4.67569 4.73207 4.79978 4.83739 4.88990 4.91386 4.92262 5.01855 5.08187 5.12232 5.18024 5.20551 5.23624 5.33326 5.35894 5.44583 5.51453 5.54815 5.60305 5.62198 5.67125 5.70582 5.81708 6.05001 6.17416 6.59528 7.21389 7.73252 8.16100 8.78034 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.009137 C = 0.006026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.542365 B = 3063.730145 C = 4645.264847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.003 3.997 3 Si 0.959 3.041 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.251 1.251 7 C -0.354 4.354 8 H 0.129 0.871 9 N -0.436 5.436 10 C 0.476 3.524 11 O -0.626 6.626 12 C -0.148 4.148 13 C -0.118 4.118 14 C -0.080 4.080 15 C -0.107 4.107 16 C -0.114 4.114 17 C -0.104 4.104 18 C -0.102 4.102 19 C 0.159 3.841 20 C -0.102 4.102 21 C -0.113 4.113 22 C -0.103 4.103 23 C -0.122 4.122 24 H 0.268 0.732 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.048 0.952 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.044 0.956 34 H 0.061 0.939 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.031 0.969 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.051 0.949 43 H 0.063 0.937 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.862 -2.435 2.260 7.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.201 4.201 3 Si 0.783 3.217 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.174 1.174 7 C -0.481 4.481 8 H 0.146 0.854 9 N -0.152 5.152 10 C 0.268 3.732 11 O -0.516 6.516 12 C -0.151 4.151 13 C -0.139 4.139 14 C -0.117 4.117 15 C -0.145 4.145 16 C -0.151 4.151 17 C -0.141 4.141 18 C -0.138 4.138 19 C 0.054 3.946 20 C -0.141 4.141 21 C -0.150 4.150 22 C -0.141 4.141 23 C -0.161 4.161 24 H 0.078 0.922 25 H 0.114 0.886 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.121 0.879 36 H 0.092 0.908 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.469 -2.718 2.080 7.319 hybrid contribution -0.168 0.924 -0.201 0.961 sum 6.301 -1.793 1.879 6.816 Atomic orbital electron populations 1.70156 1.07332 1.28636 1.45356 1.25994 0.95607 1.02060 0.96441 0.85427 0.79426 0.78434 0.78375 1.20561 1.21356 1.17407 1.20585 0.99305 0.85759 1.42479 0.85446 1.43742 1.35392 1.05545 1.30515 1.18904 0.85726 0.83628 0.84930 1.90554 1.60197 1.35641 1.65176 1.21359 0.98734 0.97539 0.97477 1.23219 0.96209 0.95998 0.98466 1.20850 0.94165 1.01741 0.94974 1.21237 0.96781 0.95085 1.01382 1.21141 0.98853 0.95266 0.99848 1.21174 0.93938 0.99628 0.99364 1.21469 0.98934 0.96627 0.96796 1.21402 0.87803 0.98444 0.86921 1.22300 0.96424 0.97950 0.97422 1.22415 0.97061 0.98945 0.96627 1.22133 0.94240 0.97728 0.99999 1.22390 0.98931 0.97359 0.97381 0.92229 0.88608 0.89712 0.90566 0.93292 0.89270 0.91134 0.91374 0.91833 0.93724 0.92101 0.87941 0.90764 0.95017 0.92792 0.90624 0.91452 0.90441 0.93020 0.91785 0.94103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.10 11.13 21.69 0.24 -44.86 16 2 C 0.00 0.14 4.69 84.97 0.40 0.53 16 3 Si 0.96 38.31 29.61 68.60 2.03 40.34 16 4 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.29 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 7 C -0.35 -17.35 6.08 84.12 0.51 -16.84 16 8 H 0.13 5.85 3.19 -2.91 -0.01 5.84 16 9 N -0.44 -22.07 2.52 -613.58 -1.55 -23.62 16 10 C 0.48 24.03 6.32 86.53 0.55 24.57 16 11 O -0.63 -33.51 12.24 -4.20 -0.05 -33.56 16 12 C -0.15 -6.33 4.91 -18.02 -0.09 -6.42 16 13 C -0.12 -4.36 8.91 25.23 0.22 -4.14 16 14 C -0.08 -2.13 5.62 30.09 0.17 -1.97 16 15 C -0.11 -2.55 5.66 30.21 0.17 -2.38 16 16 C -0.11 -2.81 5.27 29.79 0.16 -2.66 16 17 C -0.10 -3.38 4.09 30.20 0.12 -3.26 16 18 C -0.10 -3.91 4.56 30.10 0.14 -3.78 16 19 C 0.16 7.66 2.32 45.72 0.11 7.76 16 20 C -0.10 -4.79 5.90 31.69 0.19 -4.60 16 21 C -0.11 -4.23 6.91 31.91 0.22 -4.01 16 22 C -0.10 -3.96 6.40 31.67 0.20 -3.75 16 23 C -0.12 -5.27 5.74 31.32 0.18 -5.09 16 24 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 25 H 0.10 3.80 7.55 -2.91 -0.02 3.78 16 26 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.08 1.98 6.76 -2.39 -0.02 1.96 16 28 H 0.05 1.30 7.85 -2.39 -0.02 1.28 16 29 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.54 7.88 -2.39 -0.02 1.52 16 32 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.04 1.61 7.13 -2.39 -0.02 1.60 16 34 H 0.06 2.12 6.74 -2.39 -0.02 2.11 16 35 H 0.10 4.68 4.59 -2.38 -0.01 4.67 16 36 H 0.07 3.81 6.23 -2.38 -0.01 3.79 16 37 H 0.03 1.65 6.52 -2.39 -0.02 1.63 16 38 H 0.05 2.61 7.76 -2.39 -0.02 2.59 16 39 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 41 H 0.08 2.43 8.14 -2.38 -0.02 2.42 16 42 H 0.05 2.20 7.17 -2.39 -0.02 2.18 16 43 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.04 1.93 6.77 -2.38 -0.02 1.91 16 Total: -1.00 -58.80 319.77 4.90 -53.90 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: 0.98 Total: 33.82 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 3.25 Total: -26.02 kcal Atomic # 7 Polarization: -67.17 SS G_CDS: -1.31 Total: -68.48 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.05 Total: -33.56 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Total: -58.80 4.90 -53.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154003746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.586 kcal (2) G-P(sol) polarization free energy of solvation -58.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds