Wall clock time and date at job start Mon Mar 30 2020 01:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99894 * 2 1 4 4 H 1.48501 * 109.46893 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47126 * 299.99604 * 3 2 1 6 6 H 1.48501 * 109.47298 * 59.99832 * 3 2 1 7 7 C 1.38807 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00225 * 159.52315 * 7 2 1 9 9 N 1.36939 * 120.00142 * 339.53420 * 7 2 1 10 10 C 1.46504 * 119.99711 * 321.38336 * 9 7 2 11 11 C 1.50696 * 109.46815 * 269.99719 * 10 9 7 12 12 N 1.31075 * 126.65909 * 90.02560 * 11 10 9 13 13 N 1.28846 * 107.99034 * 179.97438 * 12 11 10 14 14 N 1.28735 * 109.39642 * 359.97438 * 13 12 11 15 15 N 1.29019 * 108.81283 * 359.74627 * 14 13 12 16 16 C 1.46500 * 126.44287 * 180.24318 * 15 14 13 17 17 C 1.52997 * 117.49559 * 8.80072 * 16 15 14 18 18 C 1.52992 * 60.00137 * 252.50679 * 17 16 15 19 19 C 1.46499 * 120.00391 * 141.37781 * 9 7 2 20 20 C 1.55246 * 110.57666 * 59.05452 * 19 9 7 21 21 C 1.54890 * 102.58731 * 203.33795 * 20 19 9 22 22 C 1.54275 * 104.31162 * 37.93465 * 21 20 19 23 23 C 1.53875 * 106.59924 * 336.31999 * 22 21 20 24 24 H 0.97003 * 120.00150 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46808 * 29.99784 * 10 9 7 26 26 H 1.08998 * 109.47279 * 149.99892 * 10 9 7 27 27 H 1.09000 * 115.54707 * 154.50956 * 16 15 14 28 28 H 1.08997 * 117.50131 * 0.02562 * 17 16 15 29 29 H 1.09009 * 117.49618 * 145.01753 * 17 16 15 30 30 H 1.08999 * 117.50751 * 252.51180 * 18 17 16 31 31 H 1.09007 * 117.51659 * 107.48274 * 18 17 16 32 32 H 1.08997 * 110.43825 * 181.64086 * 19 9 7 33 33 H 1.09005 * 110.89419 * 85.05055 * 20 19 9 34 34 H 1.08996 * 110.76753 * 321.57077 * 20 19 9 35 35 H 1.08999 * 110.48816 * 279.18972 * 21 20 19 36 36 H 1.08993 * 110.48248 * 156.67581 * 21 20 19 37 37 H 1.08998 * 110.02932 * 95.60438 * 22 21 20 38 38 H 1.09000 * 110.03164 * 216.99061 * 22 21 20 39 39 H 1.09002 * 110.02700 * 119.28236 * 23 22 21 40 40 H 1.08993 * 110.03799 * 240.66798 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0391 -1.2318 -0.3266 9 7 1.3904 -2.3504 0.4157 10 6 0.4672 -2.3145 1.5527 11 6 1.2306 -2.5651 2.8276 12 7 1.7937 -1.6622 3.5929 13 7 2.3462 -2.2703 4.5854 14 7 2.1497 -3.5377 4.4733 15 7 1.4607 -3.7590 3.4051 16 6 1.0162 -5.0646 2.9112 17 6 1.2160 -6.2724 3.8289 18 6 2.0935 -6.1016 2.5873 19 6 1.6504 -3.6148 -0.2771 20 6 3.1619 -3.9651 -0.2244 21 6 3.3333 -4.9049 -1.4436 22 6 2.4151 -4.2982 -2.5248 23 6 1.3451 -3.4780 -1.7831 24 1 -0.4850 0.8401 -0.0004 25 1 -0.0108 -1.3362 1.6017 26 1 -0.2936 -3.0849 1.4274 27 1 0.1255 -5.0512 2.2831 28 1 1.6778 -6.0955 4.8003 29 1 0.4564 -7.0539 3.8049 30 1 1.9114 -6.7707 1.7463 31 1 3.1331 -5.8123 2.7413 32 1 1.0575 -4.4177 0.1609 33 1 3.4085 -4.4848 0.7016 34 1 3.7707 -3.0684 -0.3392 35 1 3.0122 -5.9161 -1.1940 36 1 4.3698 -4.9070 -1.7807 37 1 2.9924 -3.6497 -3.1838 38 1 1.9433 -5.0929 -3.1027 39 1 1.4032 -2.4315 -2.0823 40 1 0.3534 -3.8740 -2.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156734545.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:47 Heat of formation + Delta-G solvation = 139.950486 kcal Electronic energy + Delta-G solvation = -22883.367241 eV Core-core repulsion = 19736.403111 eV Total energy + Delta-G solvation = -3146.964131 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.94500 -39.38633 -38.64555 -36.41984 -34.46621 -33.83152 -32.55269 -29.33712 -28.88702 -27.91102 -26.04941 -24.86654 -23.54911 -23.10387 -21.88825 -21.32858 -20.74890 -18.68886 -18.43210 -17.68073 -17.19361 -16.51647 -16.08931 -15.94738 -15.72281 -15.10477 -14.64134 -14.38979 -14.15122 -14.02088 -13.25493 -13.23706 -13.00633 -12.95948 -12.79108 -12.61162 -12.52815 -12.29387 -12.05401 -11.93030 -11.88493 -11.81258 -11.75968 -11.57864 -11.30917 -11.15335 -11.06999 -10.63519 -10.50908 -8.63293 -7.92428 -5.50376 0.37423 1.17263 1.36633 1.41563 1.48815 1.53057 2.47699 2.63242 3.16660 3.31904 3.48687 3.59665 3.64482 3.81763 3.83722 4.01132 4.06570 4.30100 4.52065 4.58835 4.64934 4.69106 4.77290 4.77852 4.89171 4.92278 4.93682 5.01467 5.03598 5.13333 5.19253 5.26444 5.34555 5.40154 5.53031 5.58372 5.66254 5.69133 5.81837 6.46317 7.10625 7.75626 7.79348 8.25381 9.06796 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.013576 B = 0.009099 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.989876 B = 3076.592869 C = 4516.576271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.009 4.009 3 Si 0.934 3.066 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.295 1.295 7 C -0.251 4.251 8 H 0.045 0.955 9 N -0.566 5.566 10 C 0.220 3.780 11 C 0.198 3.802 12 N -0.346 5.346 13 N -0.124 5.124 14 N -0.119 5.119 15 N -0.272 5.272 16 C 0.021 3.979 17 C -0.139 4.139 18 C -0.151 4.151 19 C 0.167 3.833 20 C -0.132 4.132 21 C -0.109 4.109 22 C -0.115 4.115 23 C -0.128 4.128 24 H 0.255 0.745 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.177 0.823 28 H 0.096 0.904 29 H 0.153 0.847 30 H 0.150 0.850 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.032 0.968 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.046 0.954 38 H 0.079 0.921 39 H 0.042 0.958 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.762 -17.345 -1.033 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.209 4.209 3 Si 0.764 3.236 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.222 1.222 7 C -0.381 4.381 8 H 0.063 0.937 9 N -0.284 5.284 10 C 0.088 3.912 11 C -0.082 4.082 12 N -0.196 5.196 13 N -0.118 5.118 14 N -0.105 5.105 15 N -0.074 5.074 16 C -0.080 4.080 17 C -0.176 4.176 18 C -0.189 4.189 19 C 0.061 3.939 20 C -0.171 4.171 21 C -0.147 4.147 22 C -0.153 4.153 23 C -0.168 4.168 24 H 0.064 0.936 25 H 0.115 0.885 26 H 0.105 0.895 27 H 0.194 0.806 28 H 0.115 0.885 29 H 0.170 0.830 30 H 0.168 0.832 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.061 0.939 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.142 -16.750 0.064 16.750 hybrid contribution 0.247 1.480 -0.411 1.555 sum 0.105 -15.270 -0.347 15.274 Atomic orbital electron populations 1.69955 1.05993 1.26169 1.52111 1.25507 0.95521 1.00404 0.99425 0.85751 0.78934 0.82117 0.76819 1.20585 1.21010 1.22201 1.18773 0.93347 0.86307 1.39715 0.93705 1.43887 1.51500 1.04899 1.28077 1.19673 0.89641 1.04367 0.77504 1.28474 1.00046 0.80380 0.99335 1.74977 1.13898 1.28061 1.02663 1.78448 1.18574 0.97156 1.17617 1.78451 1.12679 1.13537 1.05860 1.48143 1.34285 1.09816 1.15167 1.22881 1.03592 0.74513 1.07047 1.23536 1.03177 0.95492 0.95432 1.23561 0.95398 0.98484 1.01472 1.21644 0.93959 0.86597 0.91665 1.22849 0.98410 0.98093 0.97796 1.22232 0.99273 0.98890 0.94335 1.22033 0.96738 0.98888 0.97599 1.22394 0.98183 0.99790 0.96387 0.93563 0.88492 0.89524 0.80563 0.88533 0.82953 0.83179 0.89934 0.90039 0.93045 0.94882 0.89408 0.92065 0.93514 0.90249 0.93904 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.92 11.49 21.65 0.25 -48.67 16 2 C -0.01 -0.50 4.97 84.86 0.42 -0.08 16 3 Si 0.93 45.65 29.60 68.60 2.03 47.68 16 4 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 5 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 7 C -0.25 -12.95 7.77 84.03 0.65 -12.30 16 8 H 0.05 2.46 6.68 -2.91 -0.02 2.44 16 9 N -0.57 -24.73 2.44 -675.69 -1.65 -26.38 16 10 C 0.22 9.27 5.62 85.63 0.48 9.75 16 11 C 0.20 8.37 7.72 138.13 1.07 9.43 16 12 N -0.35 -17.08 12.36 -50.45 -0.62 -17.70 16 13 N -0.12 -5.78 13.43 37.01 0.50 -5.29 16 14 N -0.12 -4.68 12.69 37.02 0.47 -4.21 16 15 N -0.27 -9.44 3.67 -317.82 -1.17 -10.61 16 16 C 0.02 0.47 6.31 44.99 0.28 0.76 16 17 C -0.14 -2.14 10.15 30.59 0.31 -1.83 16 18 C -0.15 -2.53 10.06 30.59 0.31 -2.23 16 19 C 0.17 5.71 3.39 46.19 0.16 5.87 16 20 C -0.13 -4.29 6.47 32.01 0.21 -4.09 16 21 C -0.11 -2.66 6.82 31.67 0.22 -2.45 16 22 C -0.11 -3.04 6.80 31.32 0.21 -2.82 16 23 C -0.13 -4.34 6.41 31.32 0.20 -4.14 16 24 H 0.25 13.60 8.31 -92.71 -0.77 12.82 16 25 H 0.10 4.90 5.56 -2.39 -0.01 4.89 16 26 H 0.09 2.98 7.13 -2.39 -0.02 2.97 16 27 H 0.18 3.01 7.41 -2.39 -0.02 2.99 16 28 H 0.10 1.87 7.85 -2.39 -0.02 1.85 16 29 H 0.15 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.15 1.49 8.14 -2.39 -0.02 1.48 16 31 H 0.08 1.80 8.14 -2.38 -0.02 1.79 16 32 H 0.08 2.28 7.52 -2.39 -0.02 2.26 16 33 H 0.05 1.60 7.75 -2.38 -0.02 1.58 16 34 H 0.03 1.33 6.58 -2.39 -0.02 1.31 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.04 1.84 6.96 -2.39 -0.02 1.82 16 40 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -67.52 326.35 5.36 -62.16 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 1.04 Total: 7.13 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 4.52 Total: -4.12 kcal Atomic # 7 Polarization: -110.63 SS G_CDS: -2.22 Total: -112.85 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -67.52 5.36 -62.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156734545.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.111 kcal (2) G-P(sol) polarization free energy of solvation -67.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds