Wall clock time and date at job start Mon Mar 30 2020 02:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32194 * 120.35362 * 2 1 4 4 N 1.28749 * 120.48372 * 179.75646 * 3 2 1 5 5 C 1.32724 * 121.23924 * 0.52394 * 4 3 2 6 6 N 1.38425 * 119.65691 * 179.75199 * 5 4 3 7 7 C 1.46500 * 119.99792 * 359.97438 * 6 5 4 8 8 C 1.53041 * 109.45853 * 274.79287 * 7 6 5 9 9 C 1.53200 * 109.30986 * 178.61607 * 8 7 6 10 10 N 1.46927 * 108.77668 * 54.63474 * 9 8 7 11 11 C 1.36938 * 120.62723 * 126.36704 * 10 9 8 12 12 H 1.07991 * 120.00138 * 331.86166 * 11 10 9 13 13 C 1.38811 * 119.99453 * 151.86418 * 11 10 9 14 14 N 1.31617 * 120.00323 * 343.06984 * 13 11 10 15 15 Si 1.86805 * 119.99671 * 163.06808 * 13 11 10 16 16 H 1.48493 * 109.46956 * 90.00089 * 15 13 11 17 17 H 1.48500 * 109.46761 * 209.99774 * 15 13 11 18 18 H 1.48492 * 109.47236 * 329.99792 * 15 13 11 19 19 C 1.46924 * 118.73871 * 306.39515 * 10 9 8 20 20 C 1.53041 * 109.45806 * 154.72787 * 7 6 5 21 21 N 1.32702 * 120.68272 * 359.47289 * 5 4 3 22 22 C 1.32412 * 119.46714 * 0.25343 * 21 5 4 23 23 C 1.50694 * 120.58647 * 179.97438 * 22 21 5 24 24 H 1.09000 * 109.47783 * 269.98182 * 1 2 3 25 25 H 1.08996 * 109.47139 * 29.98628 * 1 2 3 26 26 H 1.09008 * 109.46643 * 149.98140 * 1 2 3 27 27 H 0.96997 * 119.99980 * 179.72809 * 6 5 4 28 28 H 1.08993 * 109.46014 * 34.75532 * 7 6 5 29 29 H 1.08997 * 109.49921 * 298.56500 * 8 7 6 30 30 H 1.08999 * 109.49956 * 58.67130 * 8 7 6 31 31 H 1.09003 * 109.58526 * 294.84834 * 9 8 7 32 32 H 1.08998 * 109.70051 * 174.49614 * 9 8 7 33 33 H 0.97003 * 119.99814 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.58579 * 293.81894 * 19 10 9 35 35 H 1.09004 * 109.70555 * 173.46340 * 19 10 9 36 36 H 1.09004 * 109.49519 * 301.33649 * 20 7 6 37 37 H 1.08999 * 109.49876 * 61.40104 * 20 7 6 38 38 H 1.08993 * 109.47531 * 90.00390 * 23 22 21 39 39 H 1.09004 * 109.47194 * 210.00187 * 23 22 21 40 40 H 1.09002 * 109.47252 * 329.99672 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1750 1.1407 0.0000 4 7 3.4625 1.1437 0.0047 5 6 4.1534 0.0105 -0.0007 6 7 5.5370 0.0519 -0.0006 7 6 6.2312 1.3419 0.0050 8 6 6.3666 1.8542 -1.4308 9 6 7.0619 3.2192 -1.4182 10 7 8.3373 3.0937 -0.6996 11 6 9.5091 3.4966 -1.2824 12 1 9.6122 3.4771 -2.3572 13 6 10.5644 3.9300 -0.4916 14 7 10.3507 4.2724 0.7611 15 14 12.2879 4.0272 -1.2055 16 1 12.5038 5.3723 -1.7963 17 1 13.2835 3.7940 -0.1286 18 1 12.4465 2.9925 -2.2587 19 6 8.3315 2.5271 0.6560 20 6 7.6219 1.1699 0.6202 21 7 3.5315 -1.1618 -0.0007 22 6 2.2079 -1.1970 -0.0003 23 6 1.4758 -2.5141 -0.0008 24 1 -0.3635 -0.0003 1.0276 25 1 -0.3633 0.8901 -0.5136 26 1 -0.3633 -0.8899 -0.5142 27 1 6.0469 -0.7733 -0.0005 28 1 5.6598 2.0593 0.5939 29 1 6.9591 1.1495 -2.0142 30 1 5.3768 1.9543 -1.8762 31 1 6.4278 3.9477 -0.9128 32 1 7.2494 3.5455 -2.4412 33 1 11.0881 4.5757 1.3136 34 1 7.8009 3.1991 1.3306 35 1 9.3561 2.3947 1.0034 36 1 7.5255 0.7829 1.6347 37 1 8.2024 0.4712 0.0178 38 1 1.2995 -2.8323 1.0266 39 1 0.5212 -2.3991 -0.5143 40 1 2.0770 -3.2638 -0.5153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159106481.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:05 Heat of formation + Delta-G solvation = 93.464132 kcal Electronic energy + Delta-G solvation = -21436.255848 eV Core-core repulsion = 18287.275918 eV Total energy + Delta-G solvation = -3148.979930 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.69175 -38.22109 -35.84428 -35.31052 -33.66622 -31.92240 -30.20265 -29.68608 -29.19399 -27.58750 -25.00865 -23.94486 -22.86771 -22.15580 -21.45208 -19.55691 -18.63345 -17.44283 -16.71890 -16.04059 -15.27602 -15.07367 -14.67492 -14.07669 -13.93789 -13.76001 -13.55609 -13.39797 -13.28664 -12.99119 -12.78301 -12.37668 -12.24342 -11.95835 -11.54953 -11.50918 -11.35399 -11.09626 -10.84044 -10.71387 -10.66437 -10.34704 -10.17511 -9.92009 -9.65395 -9.58513 -9.12915 -8.49272 -8.07961 -6.69277 -5.80306 -3.22301 0.66602 1.02577 2.81149 3.37332 3.44331 3.46704 3.61661 3.74747 4.12304 4.38694 4.49258 4.64744 4.87299 5.06271 5.16154 5.29235 5.34455 5.37553 5.44680 5.48369 5.54622 5.56705 5.72294 5.85620 5.98549 6.06233 6.26986 6.36370 6.48900 6.52477 6.56752 6.76954 6.81413 6.98520 7.28845 7.34849 7.51724 7.61819 7.79164 8.43891 8.74943 9.20014 9.83193 10.40115 11.28793 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.047487 B = 0.003451 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.494278 B = 8111.098910 C = 8282.023934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.062 4.062 3 N -0.149 5.149 4 N -0.325 5.325 5 C 0.504 3.496 6 N -0.677 5.677 7 C 0.161 3.839 8 C -0.138 4.138 9 C 0.149 3.851 10 N -0.593 5.593 11 C -0.253 4.253 12 H 0.066 0.934 13 C 0.002 3.998 14 N -0.903 5.903 15 Si 0.902 3.098 16 H -0.287 1.287 17 H -0.290 1.290 18 H -0.280 1.280 19 C 0.176 3.824 20 C -0.147 4.147 21 N -0.529 5.529 22 C 0.195 3.805 23 C -0.108 4.108 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.410 0.590 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.023 0.977 32 H 0.056 0.944 33 H 0.254 0.746 34 H 0.022 0.978 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.582 -13.116 -0.297 21.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.214 4.214 3 N -0.001 5.001 4 N -0.184 5.184 5 C 0.145 3.855 6 N -0.311 5.311 7 C 0.058 3.942 8 C -0.179 4.179 9 C 0.022 3.978 10 N -0.315 5.315 11 C -0.382 4.382 12 H 0.083 0.917 13 C -0.196 4.196 14 N -0.547 5.547 15 Si 0.732 3.268 16 H -0.214 1.214 17 H -0.216 1.216 18 H -0.205 1.205 19 C 0.049 3.951 20 C -0.187 4.187 21 N -0.257 5.257 22 C 0.036 3.964 23 C -0.166 4.166 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.247 0.753 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.041 0.959 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.678 -11.932 -0.177 20.508 hybrid contribution 0.796 -1.075 -0.282 1.367 sum -15.882 -13.007 -0.459 20.534 Atomic orbital electron populations 1.20500 0.87078 1.03677 1.03159 1.23015 0.99862 0.91590 1.06964 1.73462 1.00200 1.24425 1.01985 1.73812 1.00358 1.23424 1.20837 1.20995 0.89038 0.86573 0.88848 1.44826 0.99324 1.10951 1.76021 1.21207 0.92958 0.82242 0.97794 1.22409 0.99835 1.00160 0.95497 1.20869 0.87898 0.92395 0.96672 1.44093 1.01893 1.70979 1.14561 1.19176 0.90097 1.37397 0.91578 0.91658 1.25052 0.99258 0.98718 0.96591 1.70021 1.30616 1.46664 1.07425 0.86304 0.84489 0.77939 0.78092 1.21361 1.21562 1.20508 1.20735 1.00338 0.87587 0.86404 1.22581 0.94131 1.02917 0.99106 1.68357 1.09901 1.27988 1.19459 1.22179 0.89182 0.96977 0.88110 1.20878 0.99847 0.91782 1.04091 0.90442 0.90307 0.90416 0.75295 0.89411 0.92371 0.92778 0.95908 0.92500 0.93584 0.95949 0.88921 0.92640 0.92035 0.89095 0.89237 0.89668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 9.83 36.00 0.35 -0.27 16 2 C -0.06 -0.74 6.87 -82.26 -0.57 -1.31 16 3 N -0.15 -2.37 11.56 33.65 0.39 -1.98 16 4 N -0.32 -5.72 10.38 29.84 0.31 -5.41 16 5 C 0.50 8.25 8.48 -322.21 -2.73 5.51 16 6 N -0.68 -10.63 5.22 -55.64 -0.29 -10.92 16 7 C 0.16 2.86 2.42 -67.89 -0.16 2.70 16 8 C -0.14 -2.57 5.67 -26.61 -0.15 -2.73 16 9 C 0.15 3.21 6.52 -3.71 -0.02 3.19 16 10 N -0.59 -14.84 2.99 -172.32 -0.52 -15.36 16 11 C -0.25 -6.93 9.58 -15.06 -0.14 -7.07 16 12 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 13 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 14 N -0.90 -26.05 11.19 55.49 0.62 -25.43 16 15 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 C 0.18 4.14 5.30 -3.71 -0.02 4.12 16 20 C -0.15 -2.74 5.55 -26.61 -0.15 -2.89 16 21 N -0.53 -7.63 10.51 -10.00 -0.11 -7.74 16 22 C 0.19 2.26 6.82 -82.17 -0.56 1.70 16 23 C -0.11 -0.70 9.84 36.00 0.35 -0.35 16 24 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.36 6.05 -51.92 -0.31 0.04 16 27 H 0.41 5.72 8.72 -40.82 -0.36 5.36 16 28 H 0.09 1.70 7.51 -51.93 -0.39 1.31 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 33 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.09 2.42 6.06 -51.93 -0.31 2.10 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.36 6.06 -51.93 -0.31 0.05 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 324.52 15.07 4.89 4.89 Total: -1.00 -31.70 324.52 -9.50 -41.20 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.88 Total: 1.62 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -3.89 Total: 2.57 kcal Atomic # 7 Polarization: -67.25 SS G_CDS: 0.41 Total: -66.84 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.70 -9.50 -41.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159106481.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.662 kcal (2) G-P(sol) polarization free energy of solvation -31.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds