Wall clock time and date at job start Mon Mar 30 2020 02:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32194 * 120.35362 * 2 1 4 4 N 1.28749 * 120.48372 * 179.75646 * 3 2 1 5 5 C 1.32724 * 121.23924 * 0.52394 * 4 3 2 6 6 N 1.38425 * 119.65691 * 179.75199 * 5 4 3 7 7 C 1.46500 * 119.99792 * 359.97438 * 6 5 4 8 8 C 1.53041 * 109.45853 * 274.79287 * 7 6 5 9 9 C 1.53200 * 109.30986 * 178.61607 * 8 7 6 10 10 N 1.46927 * 108.77668 * 54.63474 * 9 8 7 11 11 C 1.36938 * 120.62723 * 126.36704 * 10 9 8 12 12 H 1.07991 * 120.00138 * 331.86166 * 11 10 9 13 13 C 1.38811 * 119.99453 * 151.86418 * 11 10 9 14 14 N 1.31617 * 120.00323 * 343.06984 * 13 11 10 15 15 Si 1.86805 * 119.99671 * 163.06808 * 13 11 10 16 16 H 1.48493 * 109.46956 * 90.00089 * 15 13 11 17 17 H 1.48500 * 109.46761 * 209.99774 * 15 13 11 18 18 H 1.48492 * 109.47236 * 329.99792 * 15 13 11 19 19 C 1.46924 * 118.73871 * 306.39515 * 10 9 8 20 20 C 1.53041 * 109.45806 * 154.72787 * 7 6 5 21 21 N 1.32702 * 120.68272 * 359.47289 * 5 4 3 22 22 C 1.32412 * 119.46714 * 0.25343 * 21 5 4 23 23 C 1.50694 * 120.58647 * 179.97438 * 22 21 5 24 24 H 1.09000 * 109.47783 * 269.98182 * 1 2 3 25 25 H 1.08996 * 109.47139 * 29.98628 * 1 2 3 26 26 H 1.09008 * 109.46643 * 149.98140 * 1 2 3 27 27 H 0.96997 * 119.99980 * 179.72809 * 6 5 4 28 28 H 1.08993 * 109.46014 * 34.75532 * 7 6 5 29 29 H 1.08997 * 109.49921 * 298.56500 * 8 7 6 30 30 H 1.08999 * 109.49956 * 58.67130 * 8 7 6 31 31 H 1.09003 * 109.58526 * 294.84834 * 9 8 7 32 32 H 1.08998 * 109.70051 * 174.49614 * 9 8 7 33 33 H 0.97003 * 119.99814 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.58579 * 293.81894 * 19 10 9 35 35 H 1.09004 * 109.70555 * 173.46340 * 19 10 9 36 36 H 1.09004 * 109.49519 * 301.33649 * 20 7 6 37 37 H 1.08999 * 109.49876 * 61.40104 * 20 7 6 38 38 H 1.08993 * 109.47531 * 90.00390 * 23 22 21 39 39 H 1.09004 * 109.47194 * 210.00187 * 23 22 21 40 40 H 1.09002 * 109.47252 * 329.99672 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1750 1.1407 0.0000 4 7 3.4625 1.1437 0.0047 5 6 4.1534 0.0105 -0.0007 6 7 5.5370 0.0519 -0.0006 7 6 6.2312 1.3419 0.0050 8 6 6.3666 1.8542 -1.4308 9 6 7.0619 3.2192 -1.4182 10 7 8.3373 3.0937 -0.6996 11 6 9.5091 3.4966 -1.2824 12 1 9.6122 3.4771 -2.3572 13 6 10.5644 3.9300 -0.4916 14 7 10.3507 4.2724 0.7611 15 14 12.2879 4.0272 -1.2055 16 1 12.5038 5.3723 -1.7963 17 1 13.2835 3.7940 -0.1286 18 1 12.4465 2.9925 -2.2587 19 6 8.3315 2.5271 0.6560 20 6 7.6219 1.1699 0.6202 21 7 3.5315 -1.1618 -0.0007 22 6 2.2079 -1.1970 -0.0003 23 6 1.4758 -2.5141 -0.0008 24 1 -0.3635 -0.0003 1.0276 25 1 -0.3633 0.8901 -0.5136 26 1 -0.3633 -0.8899 -0.5142 27 1 6.0469 -0.7733 -0.0005 28 1 5.6598 2.0593 0.5939 29 1 6.9591 1.1495 -2.0142 30 1 5.3768 1.9543 -1.8762 31 1 6.4278 3.9477 -0.9128 32 1 7.2494 3.5455 -2.4412 33 1 11.0881 4.5757 1.3136 34 1 7.8009 3.1991 1.3306 35 1 9.3561 2.3947 1.0034 36 1 7.5255 0.7829 1.6347 37 1 8.2024 0.4712 0.0178 38 1 1.2995 -2.8323 1.0266 39 1 0.5212 -2.3991 -0.5143 40 1 2.0770 -3.2638 -0.5153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159106481.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:05 Heat of formation + Delta-G solvation = 73.997038 kcal Electronic energy + Delta-G solvation = -21437.100005 eV Core-core repulsion = 18287.275918 eV Total energy + Delta-G solvation = -3149.824087 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.74336 -39.76725 -37.27113 -36.30336 -35.07065 -33.57041 -31.83047 -31.17560 -30.16843 -28.62310 -26.82352 -24.88846 -24.26054 -23.80794 -22.86639 -21.13742 -19.86392 -18.85755 -18.42246 -17.07323 -16.93069 -16.39230 -16.02845 -15.56226 -15.39113 -14.93947 -14.91948 -14.72950 -14.18809 -14.06973 -13.96745 -13.79981 -13.25543 -13.04505 -13.03642 -12.84347 -12.68429 -12.59642 -12.51467 -12.24206 -12.08997 -12.05362 -11.90699 -11.65748 -11.36053 -11.08113 -10.56304 -10.17544 -9.28482 -8.72943 -7.89556 -5.35096 -0.33638 -0.00990 1.47251 1.48581 1.58682 1.64539 2.50853 2.55643 2.78892 3.19063 3.26867 3.45993 3.64018 3.81567 3.88277 3.97418 3.98628 4.28906 4.40808 4.58700 4.60702 4.65790 4.70265 4.78003 4.84684 4.87768 4.96766 5.01748 5.04030 5.09971 5.11593 5.25532 5.42253 5.43705 5.55092 5.62568 5.67838 6.19972 6.37423 6.39157 7.12668 7.67092 7.81789 8.34947 9.17858 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.047487 B = 0.003451 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.494278 B = 8111.098910 C = 8282.023934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.049 4.049 3 N -0.191 5.191 4 N -0.370 5.370 5 C 0.490 3.510 6 N -0.675 5.675 7 C 0.179 3.821 8 C -0.121 4.121 9 C 0.147 3.853 10 N -0.609 5.609 11 C -0.266 4.266 12 H 0.067 0.933 13 C -0.048 4.048 14 N -0.934 5.934 15 Si 0.969 3.031 16 H -0.285 1.285 17 H -0.291 1.291 18 H -0.270 1.270 19 C 0.182 3.818 20 C -0.130 4.130 21 N -0.538 5.538 22 C 0.196 3.804 23 C -0.105 4.105 24 H 0.096 0.904 25 H 0.076 0.924 26 H 0.114 0.886 27 H 0.419 0.581 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.012 0.988 32 H 0.058 0.942 33 H 0.251 0.749 34 H -0.002 1.002 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.112 0.888 39 H 0.122 0.878 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.539 -15.697 -0.932 25.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.204 4.204 3 N -0.039 5.039 4 N -0.227 5.227 5 C 0.131 3.869 6 N -0.312 5.312 7 C 0.074 3.926 8 C -0.162 4.162 9 C 0.021 3.979 10 N -0.333 5.333 11 C -0.396 4.396 12 H 0.085 0.915 13 C -0.244 4.244 14 N -0.580 5.580 15 Si 0.797 3.203 16 H -0.212 1.212 17 H -0.217 1.217 18 H -0.195 1.195 19 C 0.056 3.944 20 C -0.170 4.170 21 N -0.267 5.267 22 C 0.036 3.964 23 C -0.162 4.162 24 H 0.114 0.886 25 H 0.094 0.906 26 H 0.133 0.867 27 H 0.257 0.743 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.030 0.970 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.016 0.984 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.131 0.869 39 H 0.141 0.859 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.673 -14.507 -0.827 23.660 hybrid contribution 1.154 -0.337 -0.078 1.205 sum -17.518 -14.844 -0.905 22.979 Atomic orbital electron populations 1.20743 0.83444 1.05396 1.04805 1.23882 1.02103 0.90806 1.03654 1.73366 0.99837 1.26613 1.04107 1.73705 1.01490 1.24517 1.22952 1.21039 0.89022 0.87192 0.89642 1.44393 0.99455 1.10129 1.77189 1.20737 0.92171 0.83076 0.96578 1.22175 0.99461 0.98187 0.96335 1.20940 0.86741 0.94085 0.96124 1.44341 1.02463 1.71403 1.15047 1.19505 0.91184 1.37025 0.91892 0.91538 1.25818 1.02787 0.98795 0.96994 1.70178 1.31369 1.47812 1.08657 0.85259 0.79772 0.77919 0.77367 1.21224 1.21705 1.19481 1.20529 0.98930 0.89593 0.85390 1.22294 0.94187 0.99875 1.00615 1.68451 1.11395 1.26945 1.19889 1.23158 0.88405 0.99118 0.85687 1.21126 1.00536 0.88712 1.05854 0.88605 0.90555 0.86750 0.74277 0.91363 0.92099 0.92355 0.96957 0.92382 0.93959 0.98377 0.91730 0.90701 0.91348 0.86950 0.85945 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.92 9.83 71.23 0.70 -0.22 16 2 C -0.05 -1.08 6.87 42.62 0.29 -0.78 16 3 N -0.19 -6.01 11.56 -47.44 -0.55 -6.55 16 4 N -0.37 -13.18 10.38 -59.51 -0.62 -13.80 16 5 C 0.49 15.87 8.48 261.28 2.22 18.08 16 6 N -0.68 -20.96 5.22 -329.95 -1.72 -22.68 16 7 C 0.18 6.42 2.42 45.02 0.11 6.53 16 8 C -0.12 -4.54 5.67 30.67 0.17 -4.36 16 9 C 0.15 6.53 6.52 86.37 0.56 7.09 16 10 N -0.61 -31.34 2.99 -699.09 -2.09 -33.43 16 11 C -0.27 -14.83 9.58 84.03 0.81 -14.02 16 12 H 0.07 3.61 7.88 -2.92 -0.02 3.59 16 13 C -0.05 -2.72 4.92 84.86 0.42 -2.30 16 14 N -0.93 -55.50 11.19 21.65 0.24 -55.26 16 15 Si 0.97 44.96 29.59 68.60 2.03 46.99 16 16 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 17 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 C 0.18 8.86 5.30 86.36 0.46 9.32 16 20 C -0.13 -4.86 5.55 30.67 0.17 -4.69 16 21 N -0.54 -14.71 10.51 -185.56 -1.95 -16.66 16 22 C 0.20 4.00 6.82 42.58 0.29 4.29 16 23 C -0.11 -0.88 9.84 71.23 0.70 -0.18 16 24 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.11 0.40 6.05 -2.38 -0.01 0.39 16 27 H 0.42 11.29 8.72 -92.71 -0.81 10.48 16 28 H 0.07 2.74 7.51 -2.39 -0.02 2.73 16 29 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 2.50 7.93 -2.39 -0.02 2.49 16 33 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 34 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 35 H 0.06 3.50 6.06 -2.39 -0.01 3.49 16 36 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 37 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.12 0.24 6.06 -2.38 -0.01 0.23 16 40 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -71.81 324.52 2.48 -69.33 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.24 Total: 13.33 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 6.90 Total: 18.75 kcal Atomic # 7 Polarization: -141.70 SS G_CDS: -6.69 Total: -148.39 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -71.81 2.48 -69.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159106481.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.322 kcal (2) G-P(sol) polarization free energy of solvation -71.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds