Wall clock time and date at job start Mon Mar 30 2020 01:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46490 * 120.00060 * 2 1 4 4 C 1.34781 * 119.99481 * 179.97438 * 2 1 3 5 5 O 1.21282 * 119.99994 * 0.02562 * 4 2 1 6 6 C 1.50699 * 119.99822 * 179.97438 * 4 2 1 7 7 N 1.46893 * 109.47434 * 180.02562 * 6 4 2 8 8 C 1.46901 * 111.00186 * 66.04745 * 7 6 4 9 9 C 1.50693 * 109.47511 * 193.95938 * 8 7 6 10 10 H 1.08004 * 119.99737 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00289 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00270 * 179.97438 * 11 9 8 13 13 Si 1.86808 * 119.99980 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47156 * 89.99701 * 13 11 9 15 15 H 1.48500 * 109.47179 * 209.99972 * 13 11 9 16 16 H 1.48503 * 109.46933 * 329.99997 * 13 11 9 17 17 C 1.46900 * 111.00186 * 190.00613 * 7 6 4 18 18 C 1.50703 * 109.47016 * 170.00348 * 17 7 6 19 19 C 1.38223 * 119.62264 * 95.01930 * 18 17 7 20 20 C 1.38628 * 119.16031 * 179.97438 * 19 18 17 21 21 C 1.38672 * 118.42475 * 359.97438 * 20 19 18 22 22 C 1.38186 * 119.15778 * 0.02562 * 21 20 19 23 23 N 1.31856 * 119.61279 * 274.99401 * 18 17 7 24 24 H 1.09004 * 109.47673 * 270.00805 * 1 2 3 25 25 H 1.09005 * 109.46803 * 30.00320 * 1 2 3 26 26 H 1.08998 * 109.47451 * 150.00439 * 1 2 3 27 27 H 1.09002 * 109.46855 * 239.99511 * 3 2 1 28 28 H 1.09001 * 109.47504 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.47696 * 119.99991 * 3 2 1 30 30 H 1.09002 * 109.46779 * 60.00504 * 6 4 2 31 31 H 1.09000 * 109.47503 * 300.01159 * 6 4 2 32 32 H 1.09001 * 109.46809 * 313.96000 * 8 7 6 33 33 H 1.09002 * 109.47034 * 73.95355 * 8 7 6 34 34 H 0.97002 * 120.00216 * 179.97438 * 12 11 9 35 35 H 1.08989 * 109.47527 * 49.99888 * 17 7 6 36 36 H 1.08996 * 109.46581 * 289.99458 * 17 7 6 37 37 H 1.07995 * 120.41821 * 359.95030 * 19 18 17 38 38 H 1.08006 * 120.78822 * 180.02562 * 20 19 18 39 39 H 1.07993 * 120.42192 * 179.97438 * 21 20 19 40 40 H 1.08001 * 119.60956 * 180.27218 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5323 -2.2176 0.0005 6 6 3.6458 -1.1674 -0.0001 7 7 4.1354 -2.5523 0.0001 8 6 3.7855 -3.2346 -1.2530 9 6 3.9889 -4.7188 -1.0906 10 1 4.3432 -5.1157 -0.1507 11 6 3.7239 -5.5701 -2.1423 12 7 3.9019 -6.8655 -2.0007 13 14 3.1118 -4.8837 -3.7682 14 1 4.2715 -4.5682 -4.6404 15 1 2.2488 -5.8902 -4.4370 16 1 2.3284 -3.6468 -3.5198 17 6 5.5843 -2.5985 0.2378 18 6 6.0092 -4.0247 0.4752 19 6 6.4895 -4.7790 -0.5788 20 6 6.8782 -6.0897 -0.3496 21 6 6.7693 -6.5951 0.9372 22 6 6.2799 -5.7811 1.9410 23 7 5.9190 -4.5385 1.6862 24 1 -0.3634 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8900 -0.5137 27 1 2.8242 1.3263 -0.8900 28 1 1.4892 2.0972 -0.0005 29 1 2.8242 1.3265 0.8900 30 1 4.0094 -0.6530 0.8895 31 1 4.0089 -0.6540 -0.8904 32 1 2.7417 -3.0353 -1.4959 33 1 4.4224 -2.8663 -2.0573 34 1 3.7150 -7.4645 -2.7405 35 1 5.8283 -1.9962 1.1128 36 1 6.1080 -2.2035 -0.6327 37 1 6.5607 -4.3526 -1.5685 38 1 7.2576 -6.7026 -1.1539 39 1 7.0624 -7.6120 1.1520 40 1 6.1961 -6.1658 2.9467 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178385765.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:11 Heat of formation + Delta-G solvation = 39.222397 kcal Electronic energy + Delta-G solvation = -22320.949381 eV Core-core repulsion = 19137.324602 eV Total energy + Delta-G solvation = -3183.624780 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.71822 -39.16790 -36.33891 -35.11678 -32.51767 -31.41787 -30.93009 -29.02578 -27.98233 -27.04930 -25.49134 -23.54658 -22.42384 -21.62767 -20.13887 -18.89772 -16.96645 -16.76234 -15.86197 -15.76158 -15.65239 -15.27796 -14.58870 -14.43506 -14.23067 -13.47141 -13.37752 -12.91672 -12.75933 -12.71826 -12.60687 -12.41356 -12.30061 -11.98726 -11.94709 -11.81314 -11.37623 -11.25480 -10.74811 -10.52607 -10.21957 -9.81419 -9.42806 -9.11034 -8.77320 -8.49575 -8.45381 -8.40506 -7.59986 -7.41220 -5.96206 -3.84619 2.16813 2.45931 3.06993 3.16424 3.28764 3.38576 3.43944 4.47807 4.53145 4.85035 5.04457 5.09234 5.23712 5.25746 5.36195 5.39557 5.49276 5.54303 5.63245 5.68148 5.77876 5.81411 5.90579 5.97401 6.04473 6.15477 6.36693 6.59027 6.63665 6.73030 6.83072 6.95426 7.17753 7.30652 7.46802 7.72069 7.77601 7.88586 8.00099 8.61699 8.73774 9.06093 9.15565 9.63559 11.13710 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016035 B = 0.007080 C = 0.005464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.782139 B = 3953.710468 C = 5122.917824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.636 5.636 3 C 0.084 3.916 4 C 0.508 3.492 5 O -0.494 6.494 6 C 0.042 3.958 7 N -0.505 5.505 8 C 0.153 3.847 9 C -0.487 4.487 10 H 0.097 0.903 11 C 0.070 3.930 12 N -0.887 5.887 13 Si 0.864 3.136 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.269 1.269 17 C 0.120 3.880 18 C 0.151 3.849 19 C -0.081 4.081 20 C -0.077 4.077 21 C -0.168 4.168 22 C 0.067 3.933 23 N -0.479 5.479 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.051 0.949 32 H 0.047 0.953 33 H -0.022 1.022 34 H 0.260 0.740 35 H 0.075 0.925 36 H 0.038 0.962 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.590 13.924 2.762 14.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.374 5.374 3 C -0.060 4.060 4 C 0.295 3.705 5 O -0.365 6.365 6 C -0.090 4.090 7 N -0.229 5.229 8 C 0.027 3.973 9 C -0.525 4.525 10 H 0.114 0.886 11 C -0.132 4.132 12 N -0.526 5.526 13 Si 0.692 3.308 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.194 1.194 17 C -0.008 4.008 18 C 0.010 3.990 19 C -0.102 4.102 20 C -0.103 4.103 21 C -0.188 4.188 22 C -0.089 4.089 23 N -0.189 5.189 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.069 0.931 32 H 0.065 0.935 33 H -0.005 1.005 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.679 13.401 3.727 14.011 hybrid contribution -0.002 0.083 -2.484 2.485 sum 1.677 13.484 1.243 13.645 Atomic orbital electron populations 1.21566 0.79719 1.02702 1.01409 1.47842 1.06751 1.06397 1.76457 1.21711 0.97150 0.85449 1.01655 1.20754 0.90457 0.82968 0.76328 1.90782 1.69686 1.30314 1.45746 1.21899 0.92034 0.93354 1.01707 1.61692 1.11538 1.10431 1.39274 1.20454 0.96750 0.95901 0.84160 1.21393 1.41789 0.88522 1.00809 0.88576 1.24807 0.95601 0.94731 0.98015 1.69895 1.48899 1.02065 1.31749 0.87029 0.79344 0.79454 0.85021 1.20648 1.21312 1.19356 1.20717 0.88136 0.92518 0.99418 1.20400 0.94045 0.95650 0.88861 1.21472 0.95387 0.94779 0.98517 1.21070 0.98374 0.94861 0.95973 1.21778 1.02487 0.99959 0.94557 1.22216 0.97851 0.90154 0.98667 1.67250 1.14674 1.13881 1.23100 0.93173 0.91829 0.90651 0.92373 0.90861 0.92168 0.88735 0.93077 0.93509 1.00483 0.92979 0.90700 0.94410 0.86421 0.86552 0.86685 0.84589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.08 10.41 59.85 0.62 1.70 16 2 N -0.64 -8.78 3.27 -189.52 -0.62 -9.40 16 3 C 0.08 0.74 9.74 59.84 0.58 1.33 16 4 C 0.51 9.41 7.26 -10.98 -0.08 9.33 16 5 O -0.49 -11.83 14.03 5.56 0.08 -11.75 16 6 C 0.04 0.70 4.26 -4.98 -0.02 0.68 16 7 N -0.50 -10.94 4.30 -238.98 -1.03 -11.97 16 8 C 0.15 3.82 3.33 -4.98 -0.02 3.80 16 9 C -0.49 -13.70 6.33 -34.44 -0.22 -13.92 16 10 H 0.10 2.94 5.17 -52.48 -0.27 2.67 16 11 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 12 N -0.89 -26.41 13.96 55.43 0.77 -25.64 16 13 Si 0.86 21.89 27.47 -169.99 -4.67 17.22 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 16 H -0.27 -6.84 6.54 56.52 0.37 -6.47 16 17 C 0.12 2.31 5.28 -4.97 -0.03 2.28 16 18 C 0.15 3.26 4.01 -82.59 -0.33 2.93 16 19 C -0.08 -1.75 6.31 -39.44 -0.25 -2.00 16 20 C -0.08 -1.61 10.10 -39.28 -0.40 -2.00 16 21 C -0.17 -3.31 10.11 -39.44 -0.40 -3.71 16 22 C 0.07 1.35 11.18 -17.55 -0.20 1.15 16 23 N -0.48 -10.59 10.16 -9.47 -0.10 -10.69 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.56 7.92 -51.93 -0.41 0.15 16 26 H 0.07 1.09 7.42 -51.93 -0.39 0.71 16 27 H 0.06 0.48 7.85 -51.93 -0.41 0.07 16 28 H 0.07 0.48 7.79 -51.93 -0.40 0.07 16 29 H 0.06 0.47 7.85 -51.93 -0.41 0.06 16 30 H 0.09 1.30 7.65 -51.93 -0.40 0.91 16 31 H 0.05 0.76 7.85 -51.93 -0.41 0.35 16 32 H 0.05 1.28 4.85 -51.93 -0.25 1.02 16 33 H -0.02 -0.54 7.41 -51.93 -0.38 -0.92 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 36 H 0.04 0.65 7.91 -51.93 -0.41 0.24 16 37 H 0.12 2.50 7.99 -52.49 -0.42 2.08 16 38 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 39 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 40 H 0.14 2.33 8.06 -52.49 -0.42 1.90 16 LS Contribution 323.95 15.07 4.88 4.88 Total: -1.00 -35.61 323.95 -7.33 -42.95 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -5.83 Total: 0.93 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -0.83 Total: 3.48 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.97 Total: -57.70 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.08 Total: -11.75 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.61 -7.33 -42.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178385765.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.168 kcal (2) G-P(sol) polarization free energy of solvation -35.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds