Wall clock time and date at job start Mon Mar 30 2020 01:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46490 * 120.00060 * 2 1 4 4 C 1.34781 * 119.99481 * 179.97438 * 2 1 3 5 5 O 1.21282 * 119.99994 * 0.02562 * 4 2 1 6 6 C 1.50699 * 119.99822 * 179.97438 * 4 2 1 7 7 N 1.46893 * 109.47434 * 180.02562 * 6 4 2 8 8 C 1.46901 * 111.00186 * 66.04745 * 7 6 4 9 9 C 1.50693 * 109.47511 * 193.95938 * 8 7 6 10 10 H 1.08004 * 119.99737 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00289 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00270 * 179.97438 * 11 9 8 13 13 Si 1.86808 * 119.99980 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47156 * 89.99701 * 13 11 9 15 15 H 1.48500 * 109.47179 * 209.99972 * 13 11 9 16 16 H 1.48503 * 109.46933 * 329.99997 * 13 11 9 17 17 C 1.46900 * 111.00186 * 190.00613 * 7 6 4 18 18 C 1.50703 * 109.47016 * 170.00348 * 17 7 6 19 19 C 1.38223 * 119.62264 * 95.01930 * 18 17 7 20 20 C 1.38628 * 119.16031 * 179.97438 * 19 18 17 21 21 C 1.38672 * 118.42475 * 359.97438 * 20 19 18 22 22 C 1.38186 * 119.15778 * 0.02562 * 21 20 19 23 23 N 1.31856 * 119.61279 * 274.99401 * 18 17 7 24 24 H 1.09004 * 109.47673 * 270.00805 * 1 2 3 25 25 H 1.09005 * 109.46803 * 30.00320 * 1 2 3 26 26 H 1.08998 * 109.47451 * 150.00439 * 1 2 3 27 27 H 1.09002 * 109.46855 * 239.99511 * 3 2 1 28 28 H 1.09001 * 109.47504 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.47696 * 119.99991 * 3 2 1 30 30 H 1.09002 * 109.46779 * 60.00504 * 6 4 2 31 31 H 1.09000 * 109.47503 * 300.01159 * 6 4 2 32 32 H 1.09001 * 109.46809 * 313.96000 * 8 7 6 33 33 H 1.09002 * 109.47034 * 73.95355 * 8 7 6 34 34 H 0.97002 * 120.00216 * 179.97438 * 12 11 9 35 35 H 1.08989 * 109.47527 * 49.99888 * 17 7 6 36 36 H 1.08996 * 109.46581 * 289.99458 * 17 7 6 37 37 H 1.07995 * 120.41821 * 359.95030 * 19 18 17 38 38 H 1.08006 * 120.78822 * 180.02562 * 20 19 18 39 39 H 1.07993 * 120.42192 * 179.97438 * 21 20 19 40 40 H 1.08001 * 119.60956 * 180.27218 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5323 -2.2176 0.0005 6 6 3.6458 -1.1674 -0.0001 7 7 4.1354 -2.5523 0.0001 8 6 3.7855 -3.2346 -1.2530 9 6 3.9889 -4.7188 -1.0906 10 1 4.3432 -5.1157 -0.1507 11 6 3.7239 -5.5701 -2.1423 12 7 3.9019 -6.8655 -2.0007 13 14 3.1118 -4.8837 -3.7682 14 1 4.2715 -4.5682 -4.6404 15 1 2.2488 -5.8902 -4.4370 16 1 2.3284 -3.6468 -3.5198 17 6 5.5843 -2.5985 0.2378 18 6 6.0092 -4.0247 0.4752 19 6 6.4895 -4.7790 -0.5788 20 6 6.8782 -6.0897 -0.3496 21 6 6.7693 -6.5951 0.9372 22 6 6.2799 -5.7811 1.9410 23 7 5.9190 -4.5385 1.6862 24 1 -0.3634 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8900 -0.5137 27 1 2.8242 1.3263 -0.8900 28 1 1.4892 2.0972 -0.0005 29 1 2.8242 1.3265 0.8900 30 1 4.0094 -0.6530 0.8895 31 1 4.0089 -0.6540 -0.8904 32 1 2.7417 -3.0353 -1.4959 33 1 4.4224 -2.8663 -2.0573 34 1 3.7150 -7.4645 -2.7405 35 1 5.8283 -1.9962 1.1128 36 1 6.1080 -2.2035 -0.6327 37 1 6.5607 -4.3526 -1.5685 38 1 7.2576 -6.7026 -1.1539 39 1 7.0624 -7.6120 1.1520 40 1 6.1961 -6.1658 2.9467 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178385765.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:11 Heat of formation + Delta-G solvation = 12.295296 kcal Electronic energy + Delta-G solvation = -22322.117028 eV Core-core repulsion = 19137.324602 eV Total energy + Delta-G solvation = -3184.792426 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.19011 -40.63377 -37.86230 -36.38674 -34.58241 -33.02372 -32.50970 -30.58679 -29.46669 -28.18132 -26.73415 -25.13782 -24.04967 -23.37702 -21.77430 -20.16402 -18.96793 -18.08541 -17.35738 -17.16492 -16.92719 -16.76324 -16.28853 -16.08165 -15.80770 -15.05644 -14.82226 -14.62341 -14.29550 -14.04224 -13.85235 -13.69919 -13.55299 -13.46439 -13.38487 -13.12718 -12.80525 -12.70863 -12.60558 -12.19196 -11.98167 -11.78519 -11.36947 -10.75808 -10.63942 -10.27486 -10.05232 -9.58770 -9.30231 -8.98408 -8.11935 -6.03295 0.57182 0.82020 1.27286 1.33924 1.42150 1.73304 2.08596 2.39231 3.01824 3.21147 3.52190 3.71689 3.73883 4.12303 4.26615 4.31482 4.36548 4.41500 4.45122 4.49685 4.53971 4.57075 4.62271 4.76278 4.83830 4.91342 4.92292 4.98449 5.06459 5.08974 5.18890 5.55345 5.63329 5.67810 5.72254 6.00938 6.18209 6.29181 6.48182 6.71540 6.94708 7.35040 7.44443 7.48085 8.99923 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016035 B = 0.007080 C = 0.005464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.782139 B = 3953.710468 C = 5122.917824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.629 5.629 3 C 0.074 3.926 4 C 0.497 3.503 5 O -0.566 6.566 6 C 0.043 3.957 7 N -0.532 5.532 8 C 0.169 3.831 9 C -0.484 4.484 10 H 0.067 0.933 11 C 0.022 3.978 12 N -0.925 5.925 13 Si 0.918 3.082 14 H -0.261 1.261 15 H -0.292 1.292 16 H -0.273 1.273 17 C 0.121 3.879 18 C 0.137 3.863 19 C -0.097 4.097 20 C -0.087 4.087 21 C -0.174 4.174 22 C 0.059 3.941 23 N -0.500 5.500 24 H 0.057 0.943 25 H 0.103 0.897 26 H 0.042 0.958 27 H 0.069 0.931 28 H 0.102 0.898 29 H 0.076 0.924 30 H 0.131 0.869 31 H 0.080 0.920 32 H 0.022 0.978 33 H -0.014 1.014 34 H 0.259 0.741 35 H 0.100 0.900 36 H 0.059 0.941 37 H 0.114 0.886 38 H 0.122 0.878 39 H 0.143 0.857 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.218 16.728 2.883 17.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.365 5.365 3 C -0.068 4.068 4 C 0.285 3.715 5 O -0.444 6.444 6 C -0.087 4.087 7 N -0.257 5.257 8 C 0.042 3.958 9 C -0.522 4.522 10 H 0.085 0.915 11 C -0.176 4.176 12 N -0.566 5.566 13 Si 0.745 3.255 14 H -0.186 1.186 15 H -0.218 1.218 16 H -0.198 1.198 17 C -0.007 4.007 18 C -0.002 4.002 19 C -0.117 4.117 20 C -0.113 4.113 21 C -0.194 4.194 22 C -0.096 4.096 23 N -0.210 5.210 24 H 0.075 0.925 25 H 0.122 0.878 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.121 0.879 29 H 0.095 0.905 30 H 0.148 0.852 31 H 0.097 0.903 32 H 0.040 0.960 33 H 0.003 0.997 34 H 0.068 0.932 35 H 0.119 0.881 36 H 0.077 0.923 37 H 0.132 0.868 38 H 0.140 0.860 39 H 0.161 0.839 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.327 16.303 3.851 16.913 hybrid contribution -0.182 -0.723 -2.379 2.493 sum 2.145 15.580 1.473 15.796 Atomic orbital electron populations 1.21699 0.79031 1.03014 1.02020 1.47966 1.07560 1.06872 1.74085 1.22087 0.98015 0.83681 1.02995 1.21193 0.91310 0.83301 0.75662 1.90752 1.70952 1.33092 1.49566 1.22036 0.90999 0.91117 1.04586 1.61450 1.13159 1.13529 1.37559 1.20089 0.95321 0.94329 0.86089 1.21510 1.40804 0.90421 0.99462 0.91489 1.25421 0.96180 0.94976 1.01030 1.70019 1.50946 1.03102 1.32565 0.86157 0.79206 0.78311 0.81856 1.18616 1.21788 1.19844 1.20833 0.86949 0.91539 1.01369 1.20836 0.93686 0.96994 0.88687 1.21562 0.96304 0.95307 0.98575 1.21336 0.98138 0.94958 0.96867 1.22107 1.02045 1.01263 0.93984 1.22790 0.96794 0.89853 1.00180 1.67312 1.15309 1.14868 1.23533 0.92451 0.87815 0.93948 0.91229 0.87899 0.90542 0.85170 0.90277 0.96015 0.99688 0.93232 0.88140 0.92345 0.86752 0.85999 0.83936 0.81765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.93 10.41 127.77 1.33 3.26 16 2 N -0.63 -15.88 3.27 -871.90 -2.85 -18.74 16 3 C 0.07 0.98 9.74 127.77 1.24 2.23 16 4 C 0.50 17.91 7.26 87.66 0.64 18.55 16 5 O -0.57 -27.84 14.03 -3.04 -0.04 -27.89 16 6 C 0.04 1.34 4.26 85.56 0.36 1.71 16 7 N -0.53 -22.45 4.30 -909.98 -3.91 -26.37 16 8 C 0.17 8.37 3.33 85.55 0.28 8.66 16 9 C -0.48 -27.63 6.33 25.60 0.16 -27.46 16 10 H 0.07 4.19 5.17 -2.91 -0.02 4.18 16 11 C 0.02 1.27 5.47 84.65 0.46 1.73 16 12 N -0.93 -56.35 13.96 21.45 0.30 -56.05 16 13 Si 0.92 45.74 27.47 68.60 1.88 47.63 16 14 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 15 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16 16 H -0.27 -13.72 6.54 99.48 0.65 -13.06 16 17 C 0.12 4.40 5.28 85.56 0.45 4.86 16 18 C 0.14 5.89 4.01 42.55 0.17 6.06 16 19 C -0.10 -4.22 6.31 22.36 0.14 -4.08 16 20 C -0.09 -3.66 10.10 22.47 0.23 -3.44 16 21 C -0.17 -6.78 10.11 22.36 0.23 -6.55 16 22 C 0.06 2.35 11.18 84.67 0.95 3.30 16 23 N -0.50 -21.85 10.16 -183.88 -1.87 -23.71 16 24 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.10 1.49 7.92 -2.38 -0.02 1.47 16 26 H 0.04 1.25 7.42 -2.39 -0.02 1.23 16 27 H 0.07 0.82 7.85 -2.39 -0.02 0.81 16 28 H 0.10 0.81 7.79 -2.39 -0.02 0.79 16 29 H 0.08 0.83 7.85 -2.39 -0.02 0.81 16 30 H 0.13 3.06 7.65 -2.39 -0.02 3.04 16 31 H 0.08 2.04 7.85 -2.39 -0.02 2.02 16 32 H 0.02 1.21 4.85 -2.39 -0.01 1.19 16 33 H -0.01 -0.67 7.41 -2.39 -0.02 -0.69 16 34 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 35 H 0.10 3.09 7.93 -2.39 -0.02 3.08 16 36 H 0.06 1.87 7.91 -2.39 -0.02 1.85 16 37 H 0.11 4.91 7.99 -2.91 -0.02 4.88 16 38 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 39 H 0.14 4.62 8.06 -2.91 -0.02 4.60 16 40 H 0.17 5.37 8.06 -2.91 -0.02 5.35 16 Total: -1.00 -80.86 323.95 1.12 -79.74 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.97 Total: 16.57 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 6.65 Total: 8.81 kcal Atomic # 7 Polarization: -116.53 SS G_CDS: -8.33 Total: -124.86 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.04 Total: -27.89 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.88 Total: 47.63 kcal Total: -80.86 1.12 -79.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178385765.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.034 kcal (2) G-P(sol) polarization free energy of solvation -80.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds