Wall clock time and date at job start Mon Mar 30 2020 02:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99995 * 2 1 4 4 H 1.48503 * 109.47077 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46983 * 299.99502 * 3 2 1 6 6 H 1.48494 * 109.47403 * 59.99978 * 3 2 1 7 7 C 1.37883 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99836 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99782 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46771 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47145 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47446 * 179.97438 * 11 10 9 13 13 C 1.46895 * 111.00381 * 174.87697 * 12 11 10 14 14 H 1.09004 * 109.46750 * 327.08788 * 13 12 11 15 15 C 1.52995 * 109.47642 * 87.08937 * 13 12 11 16 16 C 1.52995 * 109.47264 * 185.63522 * 15 13 12 17 17 C 1.53007 * 109.47121 * 174.57933 * 16 15 13 18 18 O 1.42900 * 109.47323 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47165 * 207.09423 * 13 12 11 20 20 C 1.38236 * 120.00054 * 319.72116 * 19 13 12 21 21 C 1.38231 * 120.00157 * 179.79061 * 20 19 13 22 22 C 1.38236 * 120.00023 * 0.43855 * 21 20 19 23 23 C 1.38234 * 119.99770 * 359.81625 * 22 21 20 24 24 C 1.38235 * 120.00219 * 359.97438 * 23 22 21 25 25 H 0.96995 * 119.99754 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47678 * 59.99786 * 9 7 2 27 27 H 1.09000 * 109.46770 * 299.99357 * 9 7 2 28 28 H 1.08991 * 109.47394 * 59.99438 * 10 9 7 29 29 H 1.09006 * 109.47363 * 299.99383 * 10 9 7 30 30 H 1.09001 * 109.47348 * 59.99758 * 11 10 9 31 31 H 1.08994 * 109.47059 * 299.99856 * 11 10 9 32 32 H 1.00907 * 111.00066 * 298.82935 * 12 11 10 33 33 H 1.09002 * 109.47032 * 65.62903 * 15 13 12 34 34 H 1.09004 * 109.46774 * 305.63615 * 15 13 12 35 35 H 1.08994 * 109.47530 * 54.57363 * 16 15 13 36 36 H 1.09005 * 109.47011 * 294.56904 * 16 15 13 37 37 H 1.09005 * 109.46338 * 299.99384 * 17 16 15 38 38 H 1.08994 * 109.47384 * 59.99341 * 17 16 15 39 39 H 0.96693 * 113.99752 * 180.02562 * 18 17 16 40 40 H 1.08004 * 119.99833 * 359.97438 * 20 19 13 41 41 H 1.08004 * 120.00018 * 180.27505 * 21 20 19 42 42 H 1.08000 * 120.00140 * 179.83402 * 22 21 20 43 43 H 1.08003 * 119.99551 * 179.97438 * 23 22 21 44 44 H 1.07998 * 119.99873 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0025 12 7 2.4348 -6.1037 0.0031 13 6 1.7386 -7.3914 0.1262 14 1 0.8469 -7.2650 0.7401 15 6 1.3349 -7.8879 -1.2635 16 6 0.4890 -9.1554 -1.1264 17 6 -0.0271 -9.5755 -2.5041 18 8 -0.8177 -10.7590 -2.3761 19 6 2.6550 -8.3980 0.7726 20 6 3.9935 -8.4350 0.4291 21 6 4.8350 -9.3555 1.0252 22 6 4.3362 -10.2451 1.9583 23 6 2.9966 -10.2116 2.2980 24 6 2.1560 -9.2883 1.7051 25 1 -0.4849 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.8712 -3.6039 0.8921 29 1 2.8725 -3.6048 -0.8878 30 1 0.8539 -5.0455 -0.8877 31 1 0.8532 -5.0442 0.8922 32 1 3.0151 -6.0838 -0.8222 33 1 2.2302 -8.1095 -1.8444 34 1 0.7546 -7.1168 -1.7704 35 1 -0.3557 -8.9589 -0.4663 36 1 1.0991 -9.9557 -0.7075 37 1 -0.6372 -8.7752 -2.9231 38 1 0.8176 -9.7720 -3.1643 39 1 -1.1782 -11.0836 -3.2125 40 1 4.3824 -7.7426 -0.3030 41 1 5.8816 -9.3814 0.7600 42 1 4.9930 -10.9660 2.4222 43 1 2.6069 -10.9070 3.0268 44 1 1.1094 -9.2624 1.9702 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179745794.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:24 Heat of formation + Delta-G solvation = -54.982469 kcal Electronic energy + Delta-G solvation = -20840.496900 eV Core-core repulsion = 17756.327435 eV Total energy + Delta-G solvation = -3084.169466 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.69342 -37.53839 -36.74268 -34.39138 -32.85699 -31.53759 -30.90051 -30.22478 -27.41441 -25.67912 -23.64517 -22.90339 -22.01071 -21.65099 -20.51477 -19.94703 -17.57115 -17.02675 -16.26837 -15.96884 -15.45446 -15.24932 -15.03634 -14.52540 -14.35495 -14.04444 -13.64386 -13.45435 -13.32010 -13.11623 -12.41742 -12.37487 -12.05933 -11.85997 -11.78233 -11.38835 -11.35318 -11.13185 -10.93463 -10.84087 -10.75678 -10.56765 -10.43246 -10.21055 -9.68683 -9.33914 -9.04280 -8.89282 -8.68340 -8.33306 -8.17215 -5.98386 -4.00207 1.37651 1.43045 3.32215 3.39589 3.44229 3.78047 3.89850 4.37619 4.49544 4.67760 4.80291 4.84321 4.91502 4.98845 5.10471 5.12303 5.18228 5.35396 5.37559 5.44136 5.48094 5.57096 5.62273 5.71265 5.79443 5.93504 5.95657 6.01835 6.06272 6.12807 6.33022 6.46802 6.51669 6.60360 6.73280 6.81617 7.01386 7.15559 7.33462 7.35132 7.59019 7.70549 7.85342 8.02358 8.45823 9.07329 9.63780 11.13122 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016642 B = 0.003260 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.073497 B = 8586.016886 C = 9833.165996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.105 4.105 11 C 0.060 3.940 12 N -0.681 5.681 13 C 0.125 3.875 14 H 0.086 0.914 15 C -0.142 4.142 16 C -0.116 4.116 17 C 0.075 3.925 18 O -0.576 6.576 19 C -0.058 4.058 20 C -0.098 4.098 21 C -0.123 4.123 22 C -0.129 4.129 23 C -0.122 4.122 24 C -0.116 4.116 25 H 0.259 0.741 26 H 0.013 0.987 27 H 0.016 0.984 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.025 0.975 31 H 0.067 0.933 32 H 0.338 0.662 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.378 0.622 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.651 -23.267 -2.432 23.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.069 4.069 12 N -0.310 5.310 13 C 0.014 3.986 14 H 0.104 0.896 15 C -0.181 4.181 16 C -0.154 4.154 17 C -0.003 4.003 18 O -0.381 6.381 19 C -0.059 4.059 20 C -0.116 4.116 21 C -0.141 4.141 22 C -0.147 4.147 23 C -0.140 4.140 24 C -0.134 4.134 25 H 0.069 0.931 26 H 0.032 0.968 27 H 0.034 0.966 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.156 0.844 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.224 0.776 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.136 0.864 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.797 -22.985 -1.118 23.323 hybrid contribution -0.107 0.864 -1.493 1.728 sum 3.690 -22.120 -2.611 22.577 Atomic orbital electron populations 1.69979 1.06055 1.26423 1.51179 1.25037 0.94852 0.99276 0.95419 0.86543 0.80159 0.83815 0.77536 1.19716 1.21077 1.21018 1.21300 0.93099 0.91052 1.50124 0.92622 1.19071 0.94030 0.91428 0.97073 1.21604 0.99153 0.92844 1.00754 1.22179 0.93988 0.90781 0.99929 1.60652 1.23538 1.01019 1.45813 1.20512 0.95129 0.88390 0.94543 0.89604 1.22238 1.00197 0.97440 0.98208 1.21480 0.99895 0.97723 0.96283 1.22239 0.93576 0.86592 0.97906 1.86478 1.70724 1.44572 1.36372 1.19802 0.94425 0.95425 0.96244 1.20926 0.93069 0.97697 0.99933 1.21127 0.99559 0.96039 0.97397 1.21082 0.95578 0.99515 0.98545 1.21062 0.93877 0.99026 1.00067 1.21008 0.99695 0.95847 0.96879 0.93116 0.96845 0.96607 0.92555 0.93677 0.95638 0.91451 0.84414 0.91424 0.91157 0.91195 0.90870 0.93640 0.93822 0.77574 0.86138 0.86421 0.86586 0.86431 0.86378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.18 5.46 -26.73 -0.15 -2.33 16 11 C 0.06 1.01 5.52 -3.82 -0.02 0.98 16 12 N -0.68 -9.60 5.65 -107.96 -0.61 -10.21 16 13 C 0.12 1.50 2.27 -68.87 -0.16 1.35 16 14 H 0.09 1.09 7.55 -51.93 -0.39 0.70 16 15 C -0.14 -1.47 4.64 -26.74 -0.12 -1.59 16 16 C -0.12 -1.17 5.18 -26.73 -0.14 -1.31 16 17 C 0.07 0.68 7.05 37.16 0.26 0.95 16 18 O -0.58 -5.60 13.66 -35.23 -0.48 -6.08 16 19 C -0.06 -0.70 4.26 -104.62 -0.45 -1.14 16 20 C -0.10 -1.14 9.31 -39.58 -0.37 -1.51 16 21 C -0.12 -1.31 10.05 -39.58 -0.40 -1.70 16 22 C -0.13 -1.31 10.05 -39.58 -0.40 -1.71 16 23 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 24 C -0.12 -1.31 8.94 -39.58 -0.35 -1.66 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.03 0.42 7.61 -51.93 -0.39 0.03 16 31 H 0.07 1.18 7.92 -51.93 -0.41 0.77 16 32 H 0.34 4.37 7.96 -39.29 -0.31 4.06 16 33 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 34 H 0.07 0.76 7.58 -51.93 -0.39 0.37 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.79 7.12 -51.93 -0.37 0.42 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.38 1.89 9.12 45.56 0.42 2.31 16 40 H 0.12 1.32 7.33 -52.48 -0.38 0.93 16 41 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 42 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 44 H 0.12 1.20 8.04 -52.49 -0.42 0.78 16 LS Contribution 361.32 15.07 5.44 5.44 Total: -1.00 -32.24 361.32 -10.02 -42.26 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -6.86 Total: 2.77 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -3.23 Total: -24.58 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.13 Total: -36.67 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.48 Total: -6.08 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.24 -10.02 -42.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179745794.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.725 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds