Wall clock time and date at job start Mon Mar 30 2020 02:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99995 * 2 1 4 4 H 1.48503 * 109.47077 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46983 * 299.99502 * 3 2 1 6 6 H 1.48494 * 109.47403 * 59.99978 * 3 2 1 7 7 C 1.37883 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99836 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99782 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46771 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47145 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47446 * 179.97438 * 11 10 9 13 13 C 1.46895 * 111.00381 * 174.87697 * 12 11 10 14 14 H 1.09004 * 109.46750 * 327.08788 * 13 12 11 15 15 C 1.52995 * 109.47642 * 87.08937 * 13 12 11 16 16 C 1.52995 * 109.47264 * 185.63522 * 15 13 12 17 17 C 1.53007 * 109.47121 * 174.57933 * 16 15 13 18 18 O 1.42900 * 109.47323 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47165 * 207.09423 * 13 12 11 20 20 C 1.38236 * 120.00054 * 319.72116 * 19 13 12 21 21 C 1.38231 * 120.00157 * 179.79061 * 20 19 13 22 22 C 1.38236 * 120.00023 * 0.43855 * 21 20 19 23 23 C 1.38234 * 119.99770 * 359.81625 * 22 21 20 24 24 C 1.38235 * 120.00219 * 359.97438 * 23 22 21 25 25 H 0.96995 * 119.99754 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47678 * 59.99786 * 9 7 2 27 27 H 1.09000 * 109.46770 * 299.99357 * 9 7 2 28 28 H 1.08991 * 109.47394 * 59.99438 * 10 9 7 29 29 H 1.09006 * 109.47363 * 299.99383 * 10 9 7 30 30 H 1.09001 * 109.47348 * 59.99758 * 11 10 9 31 31 H 1.08994 * 109.47059 * 299.99856 * 11 10 9 32 32 H 1.00907 * 111.00066 * 298.82935 * 12 11 10 33 33 H 1.09002 * 109.47032 * 65.62903 * 15 13 12 34 34 H 1.09004 * 109.46774 * 305.63615 * 15 13 12 35 35 H 1.08994 * 109.47530 * 54.57363 * 16 15 13 36 36 H 1.09005 * 109.47011 * 294.56904 * 16 15 13 37 37 H 1.09005 * 109.46338 * 299.99384 * 17 16 15 38 38 H 1.08994 * 109.47384 * 59.99341 * 17 16 15 39 39 H 0.96693 * 113.99752 * 180.02562 * 18 17 16 40 40 H 1.08004 * 119.99833 * 359.97438 * 20 19 13 41 41 H 1.08004 * 120.00018 * 180.27505 * 21 20 19 42 42 H 1.08000 * 120.00140 * 179.83402 * 22 21 20 43 43 H 1.08003 * 119.99551 * 179.97438 * 23 22 21 44 44 H 1.07998 * 119.99873 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0025 12 7 2.4348 -6.1037 0.0031 13 6 1.7386 -7.3914 0.1262 14 1 0.8469 -7.2650 0.7401 15 6 1.3349 -7.8879 -1.2635 16 6 0.4890 -9.1554 -1.1264 17 6 -0.0271 -9.5755 -2.5041 18 8 -0.8177 -10.7590 -2.3761 19 6 2.6550 -8.3980 0.7726 20 6 3.9935 -8.4350 0.4291 21 6 4.8350 -9.3555 1.0252 22 6 4.3362 -10.2451 1.9583 23 6 2.9966 -10.2116 2.2980 24 6 2.1560 -9.2883 1.7051 25 1 -0.4849 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.8712 -3.6039 0.8921 29 1 2.8725 -3.6048 -0.8878 30 1 0.8539 -5.0455 -0.8877 31 1 0.8532 -5.0442 0.8922 32 1 3.0151 -6.0838 -0.8222 33 1 2.2302 -8.1095 -1.8444 34 1 0.7546 -7.1168 -1.7704 35 1 -0.3557 -8.9589 -0.4663 36 1 1.0991 -9.9557 -0.7075 37 1 -0.6372 -8.7752 -2.9231 38 1 0.8176 -9.7720 -3.1643 39 1 -1.1782 -11.0836 -3.2125 40 1 4.3824 -7.7426 -0.3030 41 1 5.8816 -9.3814 0.7600 42 1 4.9930 -10.9660 2.4222 43 1 2.6069 -10.9070 3.0268 44 1 1.1094 -9.2624 1.9702 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179745794.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:24 Heat of formation + Delta-G solvation = -75.612180 kcal Electronic energy + Delta-G solvation = -20841.391472 eV Core-core repulsion = 17756.327435 eV Total energy + Delta-G solvation = -3085.064037 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.56860 -38.37933 -37.72878 -35.99440 -34.47804 -32.80541 -31.73258 -31.48892 -28.69670 -27.16923 -24.82258 -24.06366 -23.20152 -22.47756 -21.94367 -21.14920 -18.52213 -18.28329 -17.82300 -16.77989 -16.59090 -16.57616 -16.12916 -15.92975 -15.55694 -15.13333 -14.60602 -14.52395 -14.36029 -14.13586 -14.00469 -13.60075 -13.38266 -13.18955 -12.92804 -12.73395 -12.63370 -12.45619 -12.33822 -12.12162 -11.95553 -11.74396 -11.62762 -11.51559 -11.34975 -11.06188 -10.90882 -10.55576 -9.71619 -9.56426 -9.30352 -8.20165 -6.30907 0.54681 0.60741 1.39934 1.40414 1.53964 2.41099 2.92574 3.11409 3.13027 3.42449 3.78473 3.98567 4.02354 4.09954 4.22746 4.25228 4.34100 4.35638 4.38199 4.45483 4.54634 4.65377 4.68938 4.73702 4.77467 4.80150 4.91214 5.00207 5.10926 5.15078 5.21059 5.25103 5.25691 5.30570 5.52699 5.65534 5.71163 5.76185 5.77159 5.86908 6.09803 6.22001 6.28248 6.48602 6.86373 6.86868 7.38332 8.91934 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016642 B = 0.003260 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.073497 B = 8586.016886 C = 9833.165996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.025 3.975 10 C -0.091 4.091 11 C 0.074 3.926 12 N -0.682 5.682 13 C 0.128 3.872 14 H 0.076 0.924 15 C -0.132 4.132 16 C -0.111 4.111 17 C 0.075 3.925 18 O -0.596 6.596 19 C -0.071 4.071 20 C -0.112 4.112 21 C -0.130 4.130 22 C -0.133 4.133 23 C -0.128 4.128 24 C -0.129 4.129 25 H 0.263 0.737 26 H -0.007 1.007 27 H -0.011 1.011 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.029 0.971 31 H 0.058 0.942 32 H 0.346 0.654 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.397 0.603 40 H 0.123 0.877 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.075 -24.016 -2.731 24.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.129 4.129 11 C -0.055 4.055 12 N -0.312 5.312 13 C 0.018 3.982 14 H 0.094 0.906 15 C -0.171 4.171 16 C -0.149 4.149 17 C -0.003 4.003 18 O -0.404 6.404 19 C -0.072 4.072 20 C -0.131 4.131 21 C -0.148 4.148 22 C -0.151 4.151 23 C -0.146 4.146 24 C -0.148 4.148 25 H 0.072 0.928 26 H 0.011 0.989 27 H 0.008 0.992 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.165 0.835 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.247 0.753 40 H 0.141 0.859 41 H 0.154 0.846 42 H 0.157 0.843 43 H 0.155 0.845 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.225 -23.761 -1.434 24.371 hybrid contribution -0.567 1.023 -1.380 1.809 sum 4.659 -22.738 -2.814 23.381 Atomic orbital electron populations 1.70104 1.07778 1.27682 1.51864 1.25994 0.95795 1.03391 0.94772 0.85393 0.79082 0.78742 0.77806 1.18613 1.20244 1.20407 1.21734 0.93529 0.92446 1.50265 0.92306 1.18974 0.94433 0.93121 0.94734 1.21348 0.97966 0.92885 1.00661 1.21844 0.93803 0.90090 0.99718 1.60533 1.23101 1.01083 1.46467 1.20471 0.94740 0.87456 0.95494 0.90606 1.22113 1.00527 0.97373 0.97067 1.21395 0.99336 0.97235 0.96919 1.22224 0.94093 0.86717 0.97260 1.86423 1.70967 1.44730 1.38327 1.19803 0.94660 0.95771 0.96930 1.21071 0.93129 0.98362 1.00492 1.21414 1.00452 0.95690 0.97235 1.21420 0.95841 0.99649 0.98172 1.21362 0.94095 0.98994 1.00186 1.21178 1.00273 0.96254 0.97055 0.92788 0.98904 0.99213 0.93268 0.92942 0.95291 0.92351 0.83467 0.90492 0.91578 0.92127 0.91572 0.93170 0.92614 0.75341 0.85865 0.84583 0.84279 0.84513 0.85972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.45 13.29 21.45 0.28 -57.17 16 2 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 3 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 7 C -0.54 -31.41 9.11 25.60 0.23 -31.17 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.03 1.34 4.97 29.85 0.15 1.49 16 10 C -0.09 -3.77 5.46 30.59 0.17 -3.61 16 11 C 0.07 2.52 5.52 86.30 0.48 3.00 16 12 N -0.68 -18.86 5.65 -495.47 -2.80 -21.66 16 13 C 0.13 3.05 2.27 44.17 0.10 3.15 16 14 H 0.08 1.95 7.55 -2.39 -0.02 1.93 16 15 C -0.13 -2.63 4.64 30.59 0.14 -2.48 16 16 C -0.11 -2.17 5.18 30.59 0.16 -2.01 16 17 C 0.07 1.28 7.05 71.98 0.51 1.78 16 18 O -0.60 -10.86 13.66 -148.98 -2.04 -12.90 16 19 C -0.07 -1.65 4.26 -19.87 -0.08 -1.73 16 20 C -0.11 -2.48 9.31 22.27 0.21 -2.27 16 21 C -0.13 -2.53 10.05 22.27 0.22 -2.30 16 22 C -0.13 -2.42 10.05 22.27 0.22 -2.19 16 23 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 24 C -0.13 -2.82 8.94 22.27 0.20 -2.62 16 25 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 26 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 27 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 28 H 0.05 2.10 8.14 -2.39 -0.02 2.09 16 29 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.03 0.96 7.61 -2.39 -0.02 0.94 16 31 H 0.06 2.08 7.92 -2.39 -0.02 2.06 16 32 H 0.35 8.60 7.96 -89.69 -0.71 7.89 16 33 H 0.08 1.40 8.13 -2.39 -0.02 1.38 16 34 H 0.07 1.38 7.58 -2.38 -0.02 1.36 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 1.39 7.12 -2.38 -0.02 1.38 16 37 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.40 3.42 9.12 -74.06 -0.68 2.74 16 40 H 0.12 2.55 7.33 -2.91 -0.02 2.53 16 41 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 42 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 43 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 44 H 0.12 2.45 8.04 -2.91 -0.02 2.43 16 Total: -1.00 -68.74 361.32 0.44 -68.30 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -0.42 Total: 19.49 kcal Atomic # 6 Polarization: -46.26 SS G_CDS: 3.39 Total: -42.87 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -2.52 Total: -78.83 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -2.04 Total: -12.90 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -68.74 0.44 -68.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179745794.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.310 kcal (2) G-P(sol) polarization free energy of solvation -68.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds