Wall clock time and date at job start Mon Mar 30 2020 01:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46905 * 110.99832 * 2 1 4 4 C 1.46898 * 110.99788 * 123.95388 * 2 1 3 5 5 C 1.53002 * 109.47074 * 66.05096 * 4 2 1 6 6 N 1.46503 * 109.47033 * 179.97438 * 5 4 2 7 7 C 1.34775 * 119.99955 * 179.97438 * 6 5 4 8 8 O 1.21582 * 119.99839 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00049 * 180.02562 * 7 6 5 10 10 C 1.39238 * 120.00064 * 184.28658 * 9 7 6 11 11 C 1.39477 * 119.83512 * 324.70584 * 10 9 7 12 12 C 1.36370 * 120.17106 * 180.29495 * 11 10 9 13 13 C 1.40873 * 119.82515 * 359.47762 * 12 11 10 14 14 C 1.41157 * 120.16217 * 180.25396 * 13 12 11 15 15 H 1.08003 * 119.99672 * 215.01794 * 14 13 12 16 16 C 1.39893 * 120.00333 * 35.01428 * 14 13 12 17 17 N 1.30880 * 119.99961 * 355.54010 * 16 14 13 18 18 Si 1.86802 * 120.00211 * 175.54551 * 16 14 13 19 19 H 1.48501 * 109.47030 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47417 * 119.99955 * 18 16 14 21 21 H 1.48499 * 109.46704 * 240.00023 * 18 16 14 22 22 C 1.40866 * 119.67271 * 0.51904 * 13 12 11 23 23 C 1.36373 * 119.82749 * 359.73332 * 22 13 12 24 24 H 1.08997 * 109.47352 * 296.04692 * 1 2 3 25 25 H 1.09005 * 109.47139 * 56.04316 * 1 2 3 26 26 H 1.08996 * 109.46885 * 176.04301 * 1 2 3 27 27 H 1.08997 * 109.46852 * 183.94700 * 3 2 1 28 28 H 1.08993 * 109.47493 * 303.95631 * 3 2 1 29 29 H 1.09004 * 109.46824 * 63.95851 * 3 2 1 30 30 H 1.08995 * 109.47255 * 306.04737 * 4 2 1 31 31 H 1.09003 * 109.46679 * 186.04878 * 4 2 1 32 32 H 1.08995 * 109.47372 * 59.99713 * 5 4 2 33 33 H 1.09000 * 109.46476 * 299.99466 * 5 4 2 34 34 H 0.96997 * 119.99768 * 0.02562 * 6 5 4 35 35 H 0.96999 * 119.99950 * 4.28545 * 9 7 6 36 36 H 1.08002 * 119.91733 * 0.02562 * 11 10 9 37 37 H 1.07999 * 120.09068 * 179.69917 * 12 11 10 38 38 H 0.96992 * 120.00602 * 179.97438 * 17 16 14 39 39 H 1.08005 * 120.08491 * 179.70716 * 22 13 12 40 40 H 1.08006 * 119.91358 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9703 6 7 2.1570 -3.0066 2.1045 7 6 1.9558 -4.3376 2.1716 8 8 1.3377 -4.9041 1.2911 9 7 2.4387 -5.0404 3.2152 10 6 2.3090 -6.4265 3.2410 11 6 1.1682 -7.0266 2.7084 12 6 1.0313 -8.3832 2.7354 13 6 2.0510 -9.1793 3.2931 14 6 1.9191 -10.5844 3.3199 15 1 2.3136 -11.1480 4.1525 16 6 1.2775 -11.2470 2.2681 17 7 0.7229 -10.5590 1.3027 18 14 1.2121 -13.1137 2.2415 19 1 1.9086 -13.6505 3.4383 20 1 -0.2043 -13.5597 2.2510 21 1 1.8807 -13.6149 1.0139 22 6 3.2003 -8.5659 3.8290 23 6 3.3205 -7.2078 3.7995 24 1 -0.3634 0.4512 0.9232 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0709 27 1 3.0827 1.3433 -0.0707 28 1 1.5898 1.9164 -0.8523 29 1 1.7044 1.8723 0.9234 30 1 1.5610 -0.3873 2.0627 31 1 3.0797 -0.6610 1.1756 32 1 2.0658 -2.6213 0.0451 33 1 0.5472 -2.3475 0.9322 34 1 2.6491 -2.5544 2.8075 35 1 2.8767 -4.5806 3.9485 36 1 0.3891 -6.4152 2.2775 37 1 0.1452 -8.8462 2.3271 38 1 0.2783 -11.0183 0.5732 39 1 3.9840 -9.1695 4.2625 40 1 4.2013 -6.7360 4.2095 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180616403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:39 Heat of formation + Delta-G solvation = 3.119080 kcal Electronic energy + Delta-G solvation = -20567.853074 eV Core-core repulsion = 17382.662737 eV Total energy + Delta-G solvation = -3185.190337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.88106 -38.08097 -37.24404 -34.63583 -34.16152 -32.80077 -29.80994 -29.37518 -28.44674 -27.89263 -25.08935 -23.93334 -21.56996 -21.32488 -20.98122 -19.91875 -17.88585 -17.22051 -16.71435 -16.04036 -15.78145 -15.15473 -14.99717 -14.89785 -14.22792 -13.89301 -13.75449 -13.68897 -12.93322 -12.68912 -12.61764 -12.17440 -12.07807 -12.01435 -11.75455 -11.64295 -11.39064 -11.34007 -11.10797 -10.84449 -10.44709 -9.92401 -9.81416 -9.54312 -9.04661 -8.84059 -8.72764 -8.68631 -7.44723 -6.79455 -6.52335 -4.26029 2.72813 2.95481 3.11328 3.15181 3.18407 3.22625 3.74709 3.80456 4.04501 4.61467 4.68948 4.79738 4.81243 4.90031 5.03237 5.18135 5.28915 5.29932 5.51692 5.63250 5.72492 5.81904 5.91103 6.19362 6.43381 6.54181 6.64657 6.71611 6.87188 6.91171 7.11728 7.22404 7.35498 7.45326 7.72313 7.90163 8.09337 8.16862 8.37041 8.53874 8.75116 9.00636 9.01302 9.17439 10.38916 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038455 B = 0.002947 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.946501 B = 9498.577930 C =10054.796972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.544 5.544 3 C 0.026 3.974 4 C 0.045 3.955 5 C 0.143 3.857 6 N -0.754 5.754 7 C 0.695 3.305 8 O -0.572 6.572 9 N -0.669 5.669 10 C 0.026 3.974 11 C -0.094 4.094 12 C -0.143 4.143 13 C 0.097 3.903 14 C -0.464 4.464 15 H 0.075 0.925 16 C 0.068 3.932 17 N -0.809 5.809 18 Si 0.914 3.086 19 H -0.263 1.263 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.203 4.203 23 C -0.117 4.117 24 H 0.026 0.974 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.025 0.975 30 H 0.040 0.960 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.390 0.610 35 H 0.390 0.610 36 H 0.109 0.891 37 H 0.130 0.870 38 H 0.277 0.723 39 H 0.096 0.904 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.702 18.914 0.998 19.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.268 5.268 3 C -0.123 4.123 4 C -0.084 4.084 5 C 0.018 3.982 6 N -0.411 5.411 7 C 0.395 3.605 8 O -0.448 6.448 9 N -0.315 5.315 10 C -0.067 4.067 11 C -0.114 4.114 12 C -0.163 4.163 13 C 0.095 3.905 14 C -0.495 4.495 15 H 0.093 0.907 16 C -0.147 4.147 17 N -0.436 5.436 18 Si 0.739 3.261 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.223 4.223 23 C -0.137 4.137 24 H 0.045 0.955 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.223 0.777 35 H 0.223 0.777 36 H 0.127 0.873 37 H 0.148 0.852 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.147 18.134 -0.511 18.177 hybrid contribution 0.270 0.119 1.236 1.271 sum 1.417 18.253 0.725 18.322 Atomic orbital electron populations 1.22516 0.86909 1.03094 1.00543 1.61833 1.08450 1.13895 1.42623 1.22389 1.00874 0.88419 1.00581 1.22277 1.00739 0.93474 0.91879 1.21031 0.99206 0.88706 0.89274 1.45006 1.62303 1.06828 1.27000 1.15982 0.80822 0.80893 0.82785 1.90944 1.45045 1.68677 1.40148 1.42097 1.61915 1.06459 1.21036 1.17090 0.97751 0.79427 1.12443 1.20676 0.95742 0.95474 0.99551 1.21307 1.00283 0.91283 1.03407 1.17726 0.89643 0.93546 0.89587 1.19487 1.32669 0.91984 1.05357 0.90683 1.25884 0.93063 1.00745 0.94968 1.69803 1.27633 1.37205 1.08958 0.86173 0.78533 0.82352 0.79017 1.18678 1.20053 1.20059 1.20672 0.98743 0.92944 1.09976 1.20048 0.95923 0.94076 1.03698 0.95498 0.91184 0.90530 0.91218 0.91127 0.95634 0.94223 0.90131 0.90786 0.91723 0.77683 0.77680 0.87347 0.85240 0.91204 0.88577 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.32 60.07 0.56 0.71 16 2 N -0.54 -4.93 5.02 -251.26 -1.26 -6.19 16 3 C 0.03 0.18 9.57 60.07 0.57 0.75 16 4 C 0.04 0.40 5.07 -3.82 -0.02 0.38 16 5 C 0.14 1.74 5.60 -4.04 -0.02 1.71 16 6 N -0.75 -9.78 5.56 -65.23 -0.36 -10.14 16 7 C 0.69 12.87 8.40 -86.92 -0.73 12.14 16 8 O -0.57 -13.46 13.76 5.29 0.07 -13.39 16 9 N -0.67 -12.04 5.31 -14.10 -0.07 -12.12 16 10 C 0.03 0.58 6.31 -83.57 -0.53 0.05 16 11 C -0.09 -2.42 8.61 -39.79 -0.34 -2.76 16 12 C -0.14 -3.93 8.61 -39.26 -0.34 -4.27 16 13 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 14 C -0.46 -12.62 9.02 -37.86 -0.34 -12.96 16 15 H 0.07 1.95 7.85 -52.48 -0.41 1.53 16 16 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 17 N -0.81 -22.08 10.61 55.54 0.59 -21.49 16 18 Si 0.91 19.51 29.56 -169.99 -5.03 14.48 16 19 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 22 C -0.20 -5.00 9.74 -39.26 -0.38 -5.39 16 23 C -0.12 -2.60 9.90 -39.79 -0.39 -2.99 16 24 H 0.03 0.21 8.14 -51.93 -0.42 -0.22 16 25 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 26 H 0.08 0.71 6.47 -51.93 -0.34 0.37 16 27 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 28 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 29 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.04 0.32 8.12 -51.93 -0.42 -0.10 16 31 H 0.08 0.64 8.06 -51.93 -0.42 0.22 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.85 6.55 -51.93 -0.34 0.51 16 34 H 0.39 3.64 8.49 -40.82 -0.35 3.30 16 35 H 0.39 5.33 8.83 -40.82 -0.36 4.97 16 36 H 0.11 2.83 6.22 -52.49 -0.33 2.50 16 37 H 0.13 3.72 6.15 -52.49 -0.32 3.40 16 38 H 0.28 6.93 8.30 -40.82 -0.34 6.60 16 39 H 0.10 2.19 8.06 -52.48 -0.42 1.77 16 40 H 0.09 1.68 8.06 -52.48 -0.42 1.25 16 LS Contribution 332.20 15.07 5.01 5.01 Total: -1.00 -32.48 332.20 -9.50 -41.98 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -5.80 Total: 10.71 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -2.65 Total: -8.85 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: -1.11 Total: -49.94 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.07 Total: -13.39 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.48 -9.50 -41.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180616403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.102 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds