Wall clock time and date at job start Mon Mar 30 2020 01:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46905 * 110.99832 * 2 1 4 4 C 1.46898 * 110.99788 * 123.95388 * 2 1 3 5 5 C 1.53002 * 109.47074 * 66.05096 * 4 2 1 6 6 N 1.46503 * 109.47033 * 179.97438 * 5 4 2 7 7 C 1.34775 * 119.99955 * 179.97438 * 6 5 4 8 8 O 1.21582 * 119.99839 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00049 * 180.02562 * 7 6 5 10 10 C 1.39238 * 120.00064 * 184.28658 * 9 7 6 11 11 C 1.39477 * 119.83512 * 324.70584 * 10 9 7 12 12 C 1.36370 * 120.17106 * 180.29495 * 11 10 9 13 13 C 1.40873 * 119.82515 * 359.47762 * 12 11 10 14 14 C 1.41157 * 120.16217 * 180.25396 * 13 12 11 15 15 H 1.08003 * 119.99672 * 215.01794 * 14 13 12 16 16 C 1.39893 * 120.00333 * 35.01428 * 14 13 12 17 17 N 1.30880 * 119.99961 * 355.54010 * 16 14 13 18 18 Si 1.86802 * 120.00211 * 175.54551 * 16 14 13 19 19 H 1.48501 * 109.47030 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47417 * 119.99955 * 18 16 14 21 21 H 1.48499 * 109.46704 * 240.00023 * 18 16 14 22 22 C 1.40866 * 119.67271 * 0.51904 * 13 12 11 23 23 C 1.36373 * 119.82749 * 359.73332 * 22 13 12 24 24 H 1.08997 * 109.47352 * 296.04692 * 1 2 3 25 25 H 1.09005 * 109.47139 * 56.04316 * 1 2 3 26 26 H 1.08996 * 109.46885 * 176.04301 * 1 2 3 27 27 H 1.08997 * 109.46852 * 183.94700 * 3 2 1 28 28 H 1.08993 * 109.47493 * 303.95631 * 3 2 1 29 29 H 1.09004 * 109.46824 * 63.95851 * 3 2 1 30 30 H 1.08995 * 109.47255 * 306.04737 * 4 2 1 31 31 H 1.09003 * 109.46679 * 186.04878 * 4 2 1 32 32 H 1.08995 * 109.47372 * 59.99713 * 5 4 2 33 33 H 1.09000 * 109.46476 * 299.99466 * 5 4 2 34 34 H 0.96997 * 119.99768 * 0.02562 * 6 5 4 35 35 H 0.96999 * 119.99950 * 4.28545 * 9 7 6 36 36 H 1.08002 * 119.91733 * 0.02562 * 11 10 9 37 37 H 1.07999 * 120.09068 * 179.69917 * 12 11 10 38 38 H 0.96992 * 120.00602 * 179.97438 * 17 16 14 39 39 H 1.08005 * 120.08491 * 179.70716 * 22 13 12 40 40 H 1.08006 * 119.91358 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9703 6 7 2.1570 -3.0066 2.1045 7 6 1.9558 -4.3376 2.1716 8 8 1.3377 -4.9041 1.2911 9 7 2.4387 -5.0404 3.2152 10 6 2.3090 -6.4265 3.2410 11 6 1.1682 -7.0266 2.7084 12 6 1.0313 -8.3832 2.7354 13 6 2.0510 -9.1793 3.2931 14 6 1.9191 -10.5844 3.3199 15 1 2.3136 -11.1480 4.1525 16 6 1.2775 -11.2470 2.2681 17 7 0.7229 -10.5590 1.3027 18 14 1.2121 -13.1137 2.2415 19 1 1.9086 -13.6505 3.4383 20 1 -0.2043 -13.5597 2.2510 21 1 1.8807 -13.6149 1.0139 22 6 3.2003 -8.5659 3.8290 23 6 3.3205 -7.2078 3.7995 24 1 -0.3634 0.4512 0.9232 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0709 27 1 3.0827 1.3433 -0.0707 28 1 1.5898 1.9164 -0.8523 29 1 1.7044 1.8723 0.9234 30 1 1.5610 -0.3873 2.0627 31 1 3.0797 -0.6610 1.1756 32 1 2.0658 -2.6213 0.0451 33 1 0.5472 -2.3475 0.9322 34 1 2.6491 -2.5544 2.8075 35 1 2.8767 -4.5806 3.9485 36 1 0.3891 -6.4152 2.2775 37 1 0.1452 -8.8462 2.3271 38 1 0.2783 -11.0183 0.5732 39 1 3.9840 -9.1695 4.2625 40 1 4.2013 -6.7360 4.2095 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180616403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:38 Heat of formation + Delta-G solvation = -20.700240 kcal Electronic energy + Delta-G solvation = -20568.885958 eV Core-core repulsion = 17382.662737 eV Total energy + Delta-G solvation = -3186.223220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.41577 -39.37006 -38.55206 -36.22640 -35.61720 -34.61980 -31.44281 -31.10923 -29.89518 -28.50008 -26.78812 -25.01378 -23.24379 -22.79596 -22.22824 -21.52288 -19.36341 -19.17976 -18.23457 -17.14881 -16.91229 -16.71780 -16.11915 -15.82876 -15.75053 -15.53230 -15.03703 -14.79768 -14.56775 -14.38401 -13.91911 -13.62403 -13.30308 -13.27091 -12.92886 -12.84367 -12.64916 -12.59804 -12.45420 -12.30346 -12.13786 -11.78173 -11.65994 -11.33058 -10.92107 -10.53852 -10.09973 -9.41720 -9.36430 -8.67954 -8.46555 -6.29446 0.88373 1.16523 1.39931 1.47453 1.56222 1.69929 2.20290 2.26383 2.85233 2.99759 3.50746 3.72779 3.83002 4.03417 4.28305 4.41616 4.46891 4.50339 4.51846 4.64841 4.69983 4.85584 4.92296 5.02457 5.04466 5.05634 5.14796 5.19378 5.36751 5.42540 5.46686 5.73320 5.82799 5.99372 6.04015 6.12316 6.18142 6.22051 6.40721 6.74808 6.99478 7.06394 7.17916 7.67381 8.46792 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038455 B = 0.002947 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.946501 B = 9498.577930 C =10054.796972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.564 5.564 3 C 0.026 3.974 4 C 0.057 3.943 5 C 0.145 3.855 6 N -0.726 5.726 7 C 0.691 3.309 8 O -0.626 6.626 9 N -0.657 5.657 10 C 0.041 3.959 11 C -0.110 4.110 12 C -0.167 4.167 13 C 0.063 3.937 14 C -0.496 4.496 15 H 0.080 0.920 16 C 0.020 3.980 17 N -0.849 5.849 18 Si 0.991 3.009 19 H -0.253 1.253 20 H -0.268 1.268 21 H -0.270 1.270 22 C -0.208 4.208 23 C -0.109 4.109 24 H 0.034 0.966 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.034 0.966 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.414 0.586 35 H 0.417 0.583 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.281 0.719 39 H 0.114 0.886 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.570 20.555 2.203 20.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.288 5.288 3 C -0.121 4.121 4 C -0.072 4.072 5 C 0.020 3.980 6 N -0.384 5.384 7 C 0.391 3.609 8 O -0.507 6.507 9 N -0.305 5.305 10 C -0.053 4.053 11 C -0.130 4.130 12 C -0.188 4.188 13 C 0.060 3.940 14 C -0.527 4.527 15 H 0.098 0.902 16 C -0.191 4.191 17 N -0.477 5.477 18 Si 0.812 3.188 19 H -0.176 1.176 20 H -0.193 1.193 21 H -0.195 1.195 22 C -0.228 4.228 23 C -0.129 4.129 24 H 0.053 0.947 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.251 0.749 35 H 0.254 0.746 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.132 0.868 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.056 19.872 0.748 20.120 hybrid contribution -0.290 -0.167 0.855 0.918 sum 2.765 19.705 1.603 19.962 Atomic orbital electron populations 1.22499 0.86829 1.02295 1.01401 1.61813 1.08771 1.15352 1.42894 1.22430 1.01247 0.87119 1.01339 1.22157 1.01721 0.90725 0.92566 1.21061 0.98218 0.90831 0.87927 1.44709 1.61231 1.04798 1.27659 1.16208 0.80189 0.82333 0.82140 1.90927 1.47328 1.70260 1.42146 1.41823 1.61940 1.04743 1.22009 1.17126 0.96385 0.81712 1.10115 1.20674 0.96996 0.94809 1.00557 1.21166 1.00178 0.92261 1.05172 1.18071 0.90780 0.94172 0.90950 1.19774 1.34219 0.92420 1.06255 0.90214 1.26863 0.92121 1.05981 0.94119 1.69929 1.28670 1.39341 1.09803 0.85018 0.78800 0.75664 0.79282 1.17649 1.19330 1.19549 1.20960 0.98166 0.94394 1.09254 1.20415 0.96923 0.93207 1.02333 0.94719 0.90244 0.92199 0.90540 0.90511 0.94748 0.92707 0.88588 0.93043 0.93086 0.74914 0.74589 0.88702 0.87896 0.90862 0.86791 0.84449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.32 127.69 1.19 1.47 16 2 N -0.56 -9.17 5.02 -948.84 -4.76 -13.94 16 3 C 0.03 0.29 9.57 127.69 1.22 1.51 16 4 C 0.06 0.86 5.07 86.30 0.44 1.30 16 5 C 0.14 3.38 5.60 86.38 0.48 3.86 16 6 N -0.73 -17.33 5.56 -478.54 -2.66 -19.99 16 7 C 0.69 24.89 8.40 179.06 1.50 26.39 16 8 O -0.63 -30.11 13.76 -3.97 -0.05 -30.16 16 9 N -0.66 -22.16 5.31 -316.79 -1.68 -23.85 16 10 C 0.04 1.81 6.31 38.56 0.24 2.06 16 11 C -0.11 -5.83 8.61 22.13 0.19 -5.64 16 12 C -0.17 -9.69 8.61 22.48 0.19 -9.49 16 13 C 0.06 3.52 5.55 -21.27 -0.12 3.40 16 14 C -0.50 -27.67 9.02 23.39 0.21 -27.46 16 15 H 0.08 4.20 7.85 -2.91 -0.02 4.18 16 16 C 0.02 1.07 5.42 85.24 0.46 1.53 16 17 N -0.85 -48.49 10.61 21.82 0.23 -48.26 16 18 Si 0.99 40.64 29.56 68.60 2.03 42.67 16 19 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 20 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 21 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 22 C -0.21 -10.05 9.74 22.48 0.22 -9.83 16 23 C -0.11 -4.56 9.90 22.13 0.22 -4.34 16 24 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.08 1.05 8.12 -2.38 -0.02 1.03 16 26 H 0.06 1.11 6.47 -2.39 -0.02 1.10 16 27 H 0.08 0.75 8.12 -2.39 -0.02 0.73 16 28 H 0.08 0.76 8.12 -2.39 -0.02 0.74 16 29 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.05 0.70 8.12 -2.39 -0.02 0.68 16 31 H 0.10 1.19 8.06 -2.39 -0.02 1.17 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.05 1.36 6.55 -2.39 -0.02 1.34 16 34 H 0.41 6.19 8.49 -92.71 -0.79 5.41 16 35 H 0.42 9.73 8.83 -92.71 -0.82 8.91 16 36 H 0.09 5.22 6.22 -2.91 -0.02 5.20 16 37 H 0.10 6.38 6.15 -2.91 -0.02 6.36 16 38 H 0.28 14.70 8.30 -92.71 -0.77 13.93 16 39 H 0.11 5.01 8.06 -2.91 -0.02 4.98 16 40 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -74.48 332.20 -0.99 -75.47 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: -0.55 Total: 33.28 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: 6.46 Total: -15.22 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -8.87 Total: -106.03 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.05 Total: -30.16 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -74.48 -0.99 -75.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180616403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.772 kcal (2) G-P(sol) polarization free energy of solvation -74.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds