Wall clock time and date at job start Mon Mar 30 2020 01:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34951 * 126.04176 * 2 1 4 4 C 1.35312 * 107.74608 * 180.15356 * 3 2 1 5 5 C 1.39870 * 107.92214 * 359.60704 * 4 3 2 6 6 C 1.50703 * 125.89872 * 180.22620 * 5 4 3 7 7 C 1.50701 * 109.46991 * 124.99966 * 6 5 4 8 8 O 1.21297 * 120.00088 * 359.97438 * 7 6 5 9 9 N 1.34772 * 119.99841 * 179.97438 * 7 6 5 10 10 C 1.37096 * 120.00178 * 359.97438 * 9 7 6 11 11 H 1.08003 * 120.00201 * 233.92263 * 10 9 7 12 12 C 1.38958 * 119.99961 * 53.91935 * 10 9 7 13 13 N 1.31412 * 119.99722 * 22.96142 * 12 10 9 14 14 Si 1.86793 * 120.00318 * 202.95910 * 12 10 9 15 15 H 1.48504 * 109.47125 * 60.00110 * 14 12 10 16 16 H 1.48497 * 109.47692 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47016 * 300.00535 * 14 12 10 18 18 C 1.46503 * 120.00023 * 180.02562 * 9 7 6 19 19 C 1.54266 * 110.03139 * 239.38366 * 18 9 7 20 20 C 1.54960 * 104.16143 * 217.13838 * 19 18 9 21 21 C 1.54894 * 102.77842 * 37.88612 * 20 19 18 22 22 C 1.53877 * 110.03003 * 122.16934 * 18 9 7 23 23 N 1.30844 * 108.20062 * 0.24352 * 5 4 3 24 24 H 1.09009 * 109.46722 * 270.26445 * 1 2 3 25 25 H 1.09000 * 109.46645 * 30.25590 * 1 2 3 26 26 H 1.08990 * 109.47530 * 150.26147 * 1 2 3 27 27 H 1.08001 * 126.12366 * 359.97438 * 3 2 1 28 28 H 1.07997 * 126.03867 * 179.87510 * 4 3 2 29 29 H 1.08995 * 109.46602 * 244.99714 * 6 5 4 30 30 H 1.08999 * 109.47118 * 4.99529 * 6 5 4 31 31 H 0.97001 * 119.99940 * 174.67979 * 13 12 10 32 32 H 1.08994 * 110.01442 * 0.77597 * 18 9 7 33 33 H 1.09008 * 110.48742 * 335.78571 * 19 18 9 34 34 H 1.09002 * 110.48585 * 98.42802 * 19 18 9 35 35 H 1.09000 * 110.72054 * 279.57490 * 20 19 18 36 36 H 1.08998 * 110.92674 * 156.30092 * 20 19 18 37 37 H 1.09001 * 110.48855 * 203.40618 * 21 20 19 38 38 H 1.09003 * 110.59560 * 80.82355 * 21 20 19 39 39 H 1.09002 * 110.03087 * 238.56807 * 22 18 9 40 40 H 1.09000 * 110.03605 * 359.95094 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 -0.0035 5 6 3.5347 -0.7322 0.0035 6 6 4.7497 -1.6238 0.0075 7 6 4.6729 -2.5722 1.1761 8 8 3.7251 -2.5282 1.9317 9 7 5.6575 -3.4693 1.3816 10 6 6.7285 -3.5195 0.5273 11 1 6.9996 -4.4523 0.0553 12 6 7.4653 -2.3701 0.2685 13 7 7.4568 -1.3767 1.1288 14 14 8.4677 -2.2369 -1.3021 15 1 7.5664 -2.3572 -2.4762 16 1 9.1572 -0.9223 -1.3394 17 1 9.4767 -3.3259 -1.3390 18 6 5.5827 -4.3917 2.5173 19 6 6.8050 -4.1966 3.4380 20 6 7.1517 -5.6291 3.9165 21 6 6.8866 -6.4857 2.6536 22 6 5.6342 -5.8466 2.0190 23 7 2.2890 -1.1328 0.0056 24 1 -0.3633 0.0047 1.0278 25 1 -0.3632 0.8877 -0.5178 26 1 -0.3634 -0.8922 -0.5097 27 1 1.9283 2.1193 -0.0004 28 1 4.4211 1.2961 -0.0063 29 1 4.7852 -2.1935 -0.9211 30 1 5.6483 -1.0129 0.0936 31 1 8.0303 -0.6073 0.9869 32 1 4.6629 -4.2209 3.0767 33 1 7.6382 -3.7687 2.8803 34 1 6.5465 -3.5623 4.2860 35 1 6.4965 -5.9320 4.7332 36 1 8.1974 -5.6968 4.2168 37 1 6.6882 -7.5213 2.9297 38 1 7.7323 -6.4301 1.9680 39 1 4.7398 -6.3822 2.3373 40 1 5.7140 -5.8665 0.9321 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181508176.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:40 Heat of formation + Delta-G solvation = 43.396923 kcal Electronic energy + Delta-G solvation = -22224.112032 eV Core-core repulsion = 19040.668273 eV Total energy + Delta-G solvation = -3183.443759 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.54325 -38.74622 -36.53710 -34.01572 -33.17994 -31.37230 -29.77548 -28.88115 -27.86743 -26.88297 -25.17656 -24.40773 -20.60267 -20.35043 -19.91171 -19.22852 -18.63097 -16.47521 -16.32328 -15.61172 -15.22776 -14.87276 -14.55380 -14.20378 -13.87275 -13.55041 -13.33019 -12.88158 -12.61404 -12.46098 -12.28144 -11.99438 -11.79072 -11.60998 -11.26887 -10.98633 -10.77964 -10.59931 -10.53480 -10.40063 -10.35179 -10.26975 -9.90148 -9.84909 -9.54893 -8.79193 -8.56704 -8.16787 -7.92883 -7.15118 -6.35981 -4.14331 2.46812 3.05292 3.15174 3.23367 3.25900 3.48178 4.09558 4.30624 4.87350 4.89140 4.94558 5.21999 5.33587 5.45111 5.45785 5.53003 5.61438 5.67483 6.09026 6.16297 6.29175 6.31598 6.38811 6.42074 6.46895 6.51346 6.59300 6.62260 6.69785 6.78127 6.82353 6.97079 7.00962 7.20312 7.36470 7.41490 7.54429 7.55342 8.11804 8.43784 8.72931 8.99461 9.72749 10.17016 10.67319 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016523 B = 0.006546 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.154612 B = 4276.578100 C = 5456.313782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.391 5.391 3 C 0.035 3.965 4 C -0.263 4.263 5 C 0.104 3.896 6 C -0.056 4.056 7 C 0.521 3.479 8 O -0.598 6.598 9 N -0.450 5.450 10 C -0.337 4.337 11 H 0.081 0.919 12 C 0.053 3.947 13 N -0.852 5.852 14 Si 0.900 3.100 15 H -0.268 1.268 16 H -0.283 1.283 17 H -0.272 1.272 18 C 0.135 3.865 19 C -0.120 4.120 20 C -0.123 4.123 21 C -0.116 4.116 22 C -0.127 4.127 23 N -0.270 5.270 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.165 0.835 28 H 0.142 0.858 29 H 0.090 0.910 30 H 0.128 0.872 31 H 0.272 0.728 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.609 1.297 -2.063 5.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.173 5.173 3 C -0.110 4.110 4 C -0.292 4.292 5 C -0.064 4.064 6 C -0.097 4.097 7 C 0.310 3.690 8 O -0.482 6.482 9 N -0.171 5.171 10 C -0.465 4.465 11 H 0.099 0.901 12 C -0.155 4.155 13 N -0.487 5.487 14 Si 0.726 3.274 15 H -0.193 1.193 16 H -0.208 1.208 17 H -0.197 1.197 18 C 0.031 3.969 19 C -0.158 4.158 20 C -0.161 4.161 21 C -0.153 4.153 22 C -0.165 4.165 23 N -0.091 5.091 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.182 0.818 28 H 0.160 0.840 29 H 0.108 0.892 30 H 0.145 0.855 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.014 0.540 -1.677 6.267 hybrid contribution 1.232 1.055 -0.639 1.743 sum -4.782 1.595 -2.315 5.547 Atomic orbital electron populations 1.21663 0.75381 1.03568 1.02724 1.48533 1.06158 1.04293 1.58364 1.22315 0.91366 0.93019 1.04308 1.21402 0.96660 0.94763 1.16407 1.22193 0.93127 0.93611 0.97419 1.20275 0.93967 0.96517 0.98938 1.19992 0.81232 0.81860 0.85928 1.90529 1.34700 1.73253 1.49732 1.43335 1.18374 1.31908 1.23488 1.19060 1.09273 0.96370 1.21825 0.90136 1.25593 0.95888 0.96510 0.97467 1.69988 1.36797 1.08954 1.32948 0.86431 0.80018 0.77817 0.83170 1.19314 1.20800 1.19738 1.21520 0.97896 0.88842 0.88657 1.22593 1.00064 0.94851 0.98310 1.22453 0.99934 0.96719 0.96994 1.22248 0.98492 0.97423 0.97169 1.22397 0.96621 0.96128 1.01377 1.77478 1.01635 1.06248 1.23773 0.91431 0.90273 0.89781 0.81771 0.83971 0.89165 0.85479 0.91767 0.90661 0.89025 0.93270 0.92691 0.92523 0.93121 0.91686 0.93116 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.30 11.47 59.85 0.69 1.99 16 2 N -0.39 -6.98 4.01 -68.16 -0.27 -7.25 16 3 C 0.03 0.57 11.49 -17.22 -0.20 0.37 16 4 C -0.26 -5.11 10.72 -40.01 -0.43 -5.54 16 5 C 0.10 2.39 6.01 -82.40 -0.50 1.89 16 6 C -0.06 -1.34 4.70 -29.03 -0.14 -1.47 16 7 C 0.52 13.87 7.18 -10.99 -0.08 13.79 16 8 O -0.60 -17.41 14.91 5.54 0.08 -17.33 16 9 N -0.45 -11.31 2.35 -106.54 -0.25 -11.56 16 10 C -0.34 -8.26 6.92 -14.93 -0.10 -8.36 16 11 H 0.08 1.94 7.17 -52.48 -0.38 1.56 16 12 C 0.05 1.26 3.46 -17.46 -0.06 1.20 16 13 N -0.85 -21.61 11.69 55.50 0.65 -20.96 16 14 Si 0.90 18.69 29.61 -169.99 -5.03 13.66 16 15 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 16 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 17 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 18 C 0.14 3.07 3.29 -66.81 -0.22 2.85 16 19 C -0.12 -2.53 6.42 -25.03 -0.16 -2.69 16 20 C -0.12 -2.09 6.91 -24.70 -0.17 -2.26 16 21 C -0.12 -1.94 6.83 -25.07 -0.17 -2.11 16 22 C -0.13 -2.46 6.25 -25.61 -0.16 -2.62 16 23 N -0.27 -6.15 11.92 33.67 0.40 -5.75 16 24 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.17 1.88 8.06 -52.49 -0.42 1.46 16 28 H 0.14 2.50 8.06 -52.49 -0.42 2.08 16 29 H 0.09 2.09 8.09 -51.93 -0.42 1.67 16 30 H 0.13 3.12 5.07 -51.93 -0.26 2.85 16 31 H 0.27 6.55 8.32 -40.82 -0.34 6.21 16 32 H 0.08 1.85 6.94 -51.93 -0.36 1.49 16 33 H 0.09 2.17 7.10 -51.92 -0.37 1.80 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 1.45 6.83 -51.93 -0.35 1.10 16 LS Contribution 326.41 15.07 4.92 4.92 Total: -1.00 -31.60 326.41 -7.13 -38.73 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -5.93 Total: 8.52 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -1.70 Total: -2.97 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.53 Total: -45.52 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: 0.08 Total: -17.33 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.60 -7.13 -38.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181508176.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.127 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds