Wall clock time and date at job start Mon Mar 30 2020 01:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34951 * 126.04176 * 2 1 4 4 C 1.35312 * 107.74608 * 180.15356 * 3 2 1 5 5 C 1.39870 * 107.92214 * 359.60704 * 4 3 2 6 6 C 1.50703 * 125.89872 * 180.22620 * 5 4 3 7 7 C 1.50701 * 109.46991 * 124.99966 * 6 5 4 8 8 O 1.21297 * 120.00088 * 359.97438 * 7 6 5 9 9 N 1.34772 * 119.99841 * 179.97438 * 7 6 5 10 10 C 1.37096 * 120.00178 * 359.97438 * 9 7 6 11 11 H 1.08003 * 120.00201 * 233.92263 * 10 9 7 12 12 C 1.38958 * 119.99961 * 53.91935 * 10 9 7 13 13 N 1.31412 * 119.99722 * 22.96142 * 12 10 9 14 14 Si 1.86793 * 120.00318 * 202.95910 * 12 10 9 15 15 H 1.48504 * 109.47125 * 60.00110 * 14 12 10 16 16 H 1.48497 * 109.47692 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47016 * 300.00535 * 14 12 10 18 18 C 1.46503 * 120.00023 * 180.02562 * 9 7 6 19 19 C 1.54266 * 110.03139 * 239.38366 * 18 9 7 20 20 C 1.54960 * 104.16143 * 217.13838 * 19 18 9 21 21 C 1.54894 * 102.77842 * 37.88612 * 20 19 18 22 22 C 1.53877 * 110.03003 * 122.16934 * 18 9 7 23 23 N 1.30844 * 108.20062 * 0.24352 * 5 4 3 24 24 H 1.09009 * 109.46722 * 270.26445 * 1 2 3 25 25 H 1.09000 * 109.46645 * 30.25590 * 1 2 3 26 26 H 1.08990 * 109.47530 * 150.26147 * 1 2 3 27 27 H 1.08001 * 126.12366 * 359.97438 * 3 2 1 28 28 H 1.07997 * 126.03867 * 179.87510 * 4 3 2 29 29 H 1.08995 * 109.46602 * 244.99714 * 6 5 4 30 30 H 1.08999 * 109.47118 * 4.99529 * 6 5 4 31 31 H 0.97001 * 119.99940 * 174.67979 * 13 12 10 32 32 H 1.08994 * 110.01442 * 0.77597 * 18 9 7 33 33 H 1.09008 * 110.48742 * 335.78571 * 19 18 9 34 34 H 1.09002 * 110.48585 * 98.42802 * 19 18 9 35 35 H 1.09000 * 110.72054 * 279.57490 * 20 19 18 36 36 H 1.08998 * 110.92674 * 156.30092 * 20 19 18 37 37 H 1.09001 * 110.48855 * 203.40618 * 21 20 19 38 38 H 1.09003 * 110.59560 * 80.82355 * 21 20 19 39 39 H 1.09002 * 110.03087 * 238.56807 * 22 18 9 40 40 H 1.09000 * 110.03605 * 359.95094 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 -0.0035 5 6 3.5347 -0.7322 0.0035 6 6 4.7497 -1.6238 0.0075 7 6 4.6729 -2.5722 1.1761 8 8 3.7251 -2.5282 1.9317 9 7 5.6575 -3.4693 1.3816 10 6 6.7285 -3.5195 0.5273 11 1 6.9996 -4.4523 0.0553 12 6 7.4653 -2.3701 0.2685 13 7 7.4568 -1.3767 1.1288 14 14 8.4677 -2.2369 -1.3021 15 1 7.5664 -2.3572 -2.4762 16 1 9.1572 -0.9223 -1.3394 17 1 9.4767 -3.3259 -1.3390 18 6 5.5827 -4.3917 2.5173 19 6 6.8050 -4.1966 3.4380 20 6 7.1517 -5.6291 3.9165 21 6 6.8866 -6.4857 2.6536 22 6 5.6342 -5.8466 2.0190 23 7 2.2890 -1.1328 0.0056 24 1 -0.3633 0.0047 1.0278 25 1 -0.3632 0.8877 -0.5178 26 1 -0.3634 -0.8922 -0.5097 27 1 1.9283 2.1193 -0.0004 28 1 4.4211 1.2961 -0.0063 29 1 4.7852 -2.1935 -0.9211 30 1 5.6483 -1.0129 0.0936 31 1 8.0303 -0.6073 0.9869 32 1 4.6629 -4.2209 3.0767 33 1 7.6382 -3.7687 2.8803 34 1 6.5465 -3.5623 4.2860 35 1 6.4965 -5.9320 4.7332 36 1 8.1974 -5.6968 4.2168 37 1 6.6882 -7.5213 2.9297 38 1 7.7323 -6.4301 1.9680 39 1 4.7398 -6.3822 2.3373 40 1 5.7140 -5.8665 0.9321 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181508176.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:40 Heat of formation + Delta-G solvation = 24.213979 kcal Electronic energy + Delta-G solvation = -22224.943867 eV Core-core repulsion = 19040.668273 eV Total energy + Delta-G solvation = -3184.275594 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.01652 -40.62044 -38.30201 -35.93903 -34.60013 -33.25664 -31.24744 -30.49211 -29.45701 -28.50801 -26.77628 -26.09729 -22.17136 -21.90035 -21.39939 -21.05450 -20.27978 -18.29579 -17.82948 -17.32470 -17.10812 -16.25775 -16.21826 -15.83136 -15.61984 -15.12378 -14.72486 -14.44736 -14.22462 -14.12709 -13.72287 -13.40518 -13.35992 -13.12190 -13.03309 -12.75087 -12.46063 -12.37555 -12.23385 -12.04687 -11.86609 -11.81319 -11.41554 -11.37179 -11.30385 -10.69942 -10.22218 -10.02806 -9.39536 -9.10869 -8.25477 -6.10944 1.07237 1.47333 1.54026 1.60126 1.81888 1.89481 2.22782 2.38791 3.00641 3.12007 3.71762 3.88301 3.92590 4.05332 4.19515 4.27357 4.45133 4.54815 4.61577 4.66942 4.69232 4.76672 4.78968 4.81393 4.85544 4.92860 4.99583 5.07780 5.09833 5.17592 5.24661 5.26008 5.45548 5.52012 5.59265 5.66200 5.78257 6.20107 6.32539 6.76212 6.91752 7.07253 7.72812 8.19592 8.78941 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016523 B = 0.006546 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.154612 B = 4276.578100 C = 5456.313782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.388 5.388 3 C 0.064 3.936 4 C -0.296 4.296 5 C 0.071 3.929 6 C -0.045 4.045 7 C 0.501 3.499 8 O -0.635 6.635 9 N -0.451 5.451 10 C -0.352 4.352 11 H 0.085 0.915 12 C 0.025 3.975 13 N -0.880 5.880 14 Si 0.961 3.039 15 H -0.265 1.265 16 H -0.280 1.280 17 H -0.264 1.264 18 C 0.121 3.879 19 C -0.115 4.115 20 C -0.111 4.111 21 C -0.106 4.106 22 C -0.121 4.121 23 N -0.320 5.320 24 H 0.076 0.924 25 H 0.127 0.873 26 H 0.083 0.917 27 H 0.224 0.776 28 H 0.151 0.849 29 H 0.087 0.913 30 H 0.119 0.881 31 H 0.275 0.725 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.035 0.965 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.712 1.531 -2.669 5.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.171 5.171 3 C -0.083 4.083 4 C -0.325 4.325 5 C -0.095 4.095 6 C -0.086 4.086 7 C 0.291 3.709 8 O -0.523 6.523 9 N -0.170 5.170 10 C -0.479 4.479 11 H 0.102 0.898 12 C -0.181 4.181 13 N -0.515 5.515 14 Si 0.784 3.216 15 H -0.189 1.189 16 H -0.205 1.205 17 H -0.189 1.189 18 C 0.018 3.982 19 C -0.154 4.154 20 C -0.149 4.149 21 C -0.144 4.144 22 C -0.159 4.159 23 N -0.143 5.143 24 H 0.095 0.905 25 H 0.145 0.855 26 H 0.101 0.899 27 H 0.240 0.760 28 H 0.169 0.831 29 H 0.105 0.895 30 H 0.137 0.863 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.104 0.736 -2.282 6.558 hybrid contribution 1.148 1.038 -0.401 1.599 sum -4.956 1.774 -2.682 5.908 Atomic orbital electron populations 1.22149 0.72104 1.05969 1.04115 1.48975 1.08001 1.03507 1.56588 1.23092 0.89914 0.94858 1.00415 1.21654 0.98830 0.93435 1.18608 1.22174 0.92907 0.95082 0.99314 1.20066 0.94889 0.96077 0.97613 1.20544 0.81106 0.82716 0.86528 1.90471 1.36078 1.74557 1.51187 1.43547 1.18069 1.31564 1.23842 1.19257 1.09242 0.96987 1.22419 0.89754 1.26232 0.96623 0.95636 0.99568 1.70080 1.37467 1.09448 1.34530 0.85487 0.78684 0.77941 0.79467 1.18925 1.20516 1.18865 1.21762 0.97343 0.90655 0.88484 1.22475 0.98134 0.97630 0.97146 1.22419 1.01600 0.93256 0.97612 1.22217 0.96695 0.98940 0.96530 1.22334 0.98949 0.93998 1.00665 1.77325 1.02241 1.09261 1.25483 0.90504 0.85462 0.89852 0.75978 0.83104 0.89517 0.86308 0.91543 0.93445 0.91774 0.94620 0.90856 0.90477 0.89630 0.91920 0.91818 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.05 11.47 127.77 1.47 3.51 16 2 N -0.39 -13.28 4.01 -369.56 -1.48 -14.77 16 3 C 0.06 1.92 11.49 83.54 0.96 2.88 16 4 C -0.30 -11.49 10.72 21.99 0.24 -11.25 16 5 C 0.07 3.38 6.01 43.10 0.26 3.64 16 6 C -0.05 -2.28 4.70 29.10 0.14 -2.15 16 7 C 0.50 28.15 7.18 87.66 0.63 28.78 16 8 O -0.64 -39.20 14.91 -3.08 -0.05 -39.24 16 9 N -0.45 -23.66 2.35 -609.37 -1.43 -25.09 16 10 C -0.35 -17.67 6.92 84.04 0.58 -17.09 16 11 H 0.08 4.11 7.17 -2.91 -0.02 4.09 16 12 C 0.02 1.19 3.46 84.93 0.29 1.49 16 13 N -0.88 -45.87 11.69 21.67 0.25 -45.62 16 14 Si 0.96 38.38 29.61 68.60 2.03 40.42 16 15 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 16 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 17 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 18 C 0.12 5.73 3.29 45.72 0.15 5.88 16 19 C -0.12 -4.99 6.42 31.69 0.20 -4.78 16 20 C -0.11 -3.58 6.91 31.91 0.22 -3.36 16 21 C -0.11 -3.33 6.83 31.67 0.22 -3.11 16 22 C -0.12 -4.67 6.25 31.32 0.20 -4.48 16 23 N -0.32 -14.92 11.92 -47.38 -0.56 -15.48 16 24 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 25 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.22 3.91 8.06 -2.91 -0.02 3.89 16 28 H 0.15 5.34 8.06 -2.91 -0.02 5.31 16 29 H 0.09 4.25 8.09 -2.39 -0.02 4.23 16 30 H 0.12 6.11 5.07 -2.39 -0.01 6.09 16 31 H 0.27 13.51 8.32 -92.71 -0.77 12.74 16 32 H 0.05 2.46 6.94 -2.39 -0.02 2.44 16 33 H 0.06 3.12 7.10 -2.38 -0.02 3.11 16 34 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.09 2.14 8.14 -2.39 -0.02 2.13 16 38 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.06 2.39 6.83 -2.39 -0.02 2.37 16 Total: -1.00 -73.38 326.41 5.33 -68.05 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 1.03 Total: 31.77 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 5.55 Total: -0.04 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -3.23 Total: -100.96 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -0.05 Total: -39.24 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.42 kcal Total: -73.38 5.33 -68.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181508176.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.262 kcal (2) G-P(sol) polarization free energy of solvation -73.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds