Wall clock time and date at job start Mon Mar 30 2020 01:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.38459 * 110.99969 * 236.04369 * 2 1 3 5 5 C 1.39504 * 120.94505 * 60.00393 * 4 2 1 6 6 C 1.37778 * 119.20745 * 179.97438 * 5 4 2 7 7 N 1.32185 * 121.21954 * 359.97438 * 6 5 4 8 8 C 1.31634 * 122.12042 * 0.02562 * 7 6 5 9 9 C 1.39528 * 120.62348 * 359.74138 * 8 7 6 10 10 C 1.47454 * 120.63588 * 180.26671 * 9 8 7 11 11 O 1.21600 * 120.00407 * 180.24807 * 10 9 8 12 12 N 1.34781 * 120.00140 * 0.24433 * 10 9 8 13 13 C 1.46492 * 120.00060 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47030 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47179 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47039 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00050 * 0.02562 * 16 15 14 18 18 C 1.37887 * 120.00174 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99979 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 119.99518 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47129 * 90.00376 * 20 18 16 22 22 H 1.48501 * 109.46761 * 209.99953 * 20 18 16 23 23 H 1.48492 * 109.47646 * 329.99933 * 20 18 16 24 24 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 25 25 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 26 26 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 27 27 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 28 28 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 29 29 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 30 30 H 1.07996 * 120.39973 * 359.94949 * 5 4 2 31 31 H 1.08000 * 119.39080 * 179.97438 * 6 5 4 32 32 H 1.07997 * 119.69057 * 179.97438 * 8 7 6 33 33 H 0.96998 * 119.99573 * 0.02562 * 12 10 9 34 34 H 1.09000 * 109.47324 * 299.99602 * 13 12 10 35 35 H 1.09003 * 109.47581 * 60.00081 * 13 12 10 36 36 H 1.09008 * 109.46796 * 299.99624 * 14 13 12 37 37 H 1.08998 * 109.47393 * 59.99392 * 14 13 12 38 38 H 1.09000 * 109.47233 * 299.99503 * 15 14 13 39 39 H 1.09003 * 109.47524 * 59.99892 * 15 14 13 40 40 H 0.97004 * 119.99959 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9652 -0.7220 -1.0722 5 6 1.6638 -0.3563 -2.3843 6 6 2.1773 -1.1000 -3.4243 7 7 2.9483 -2.1501 -3.2004 8 6 3.2645 -2.5395 -1.9834 9 6 2.7937 -1.8434 -0.8696 10 6 3.1524 -2.2760 0.4936 11 8 2.7320 -1.6635 1.4563 12 7 3.9463 -3.3503 0.6728 13 6 4.3023 -3.7804 2.0272 14 6 5.2055 -5.0130 1.9500 15 6 5.5767 -5.4625 3.3645 16 6 6.4658 -6.6769 3.2885 17 1 6.7392 -7.0868 2.3274 18 6 6.9313 -7.2642 4.4460 19 7 7.7076 -8.3236 4.3796 20 14 6.4591 -6.5548 6.1082 21 1 5.2060 -7.1955 6.5820 22 1 7.5476 -6.8146 7.0845 23 1 6.2485 -5.0905 5.9799 24 1 -0.3634 -1.0252 0.0708 25 1 -0.3633 0.4513 -0.9233 26 1 -0.3633 0.5740 0.8525 27 1 1.5899 1.9163 0.8525 28 1 3.0829 1.3431 0.0709 29 1 1.7045 1.8723 -0.9233 30 1 1.0353 0.4992 -2.5825 31 1 1.9455 -0.8197 -4.4412 32 1 3.8973 -3.4038 -1.8458 33 1 4.2820 -3.8387 -0.0951 34 1 4.8305 -2.9748 2.5372 35 1 3.3959 -4.0277 2.5799 36 1 4.6776 -5.8188 1.4398 37 1 6.1118 -4.7653 1.3974 38 1 6.1044 -4.6569 3.8751 39 1 4.6702 -5.7104 3.9167 40 1 8.0348 -8.7370 5.1939 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183538821.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:00 Heat of formation + Delta-G solvation = 11.212224 kcal Electronic energy + Delta-G solvation = -20841.992206 eV Core-core repulsion = 17657.152814 eV Total energy + Delta-G solvation = -3184.839392 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.09338 -38.90998 -37.70687 -35.41244 -33.36150 -32.17152 -31.41538 -31.04466 -27.94180 -27.32377 -25.46319 -24.67851 -22.82205 -21.72496 -20.80646 -20.09690 -18.01292 -17.22462 -17.03573 -16.58091 -15.67665 -15.30140 -15.14681 -15.11000 -14.83884 -14.28110 -14.13274 -14.06992 -13.53732 -13.34942 -12.74613 -12.70195 -12.62643 -12.32404 -12.03695 -11.97906 -11.88391 -11.05449 -10.87874 -10.38434 -10.05449 -9.88565 -9.87831 -9.73153 -9.53136 -9.50256 -9.21255 -8.77989 -8.66624 -8.54231 -6.05050 -4.03628 0.39954 0.73451 2.88913 3.27979 3.32521 3.38579 3.40046 3.44440 3.63436 3.99072 4.40839 4.45720 4.52687 4.62715 4.83053 4.90585 5.00571 5.17175 5.18158 5.20850 5.25514 5.29157 5.54230 5.56487 5.59646 5.68960 5.77580 6.04195 6.11046 6.37865 6.47244 6.51533 6.72782 6.81740 6.91703 7.24667 7.38143 7.52922 7.67096 7.78313 8.40297 8.51940 8.99075 9.57298 11.08233 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028803 B = 0.003257 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.888072 B = 8594.679778 C = 9374.989870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.495 5.495 3 C 0.035 3.965 4 C 0.192 3.808 5 C -0.216 4.216 6 C 0.126 3.874 7 N -0.490 5.490 8 C 0.141 3.859 9 C -0.165 4.165 10 C 0.553 3.447 11 O -0.501 6.501 12 N -0.726 5.726 13 C 0.118 3.882 14 C -0.114 4.114 15 C -0.011 4.011 16 C -0.522 4.522 17 H 0.072 0.928 18 C 0.066 3.934 19 N -0.904 5.904 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.264 1.264 24 H 0.070 0.930 25 H 0.029 0.971 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.029 0.971 30 H 0.137 0.863 31 H 0.159 0.841 32 H 0.164 0.836 33 H 0.395 0.605 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.019 0.981 39 H 0.014 0.986 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.196 18.906 -14.786 27.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.215 5.215 3 C -0.111 4.111 4 C 0.088 3.912 5 C -0.239 4.239 6 C -0.030 4.030 7 N -0.198 5.198 8 C -0.019 4.019 9 C -0.172 4.172 10 C 0.337 3.663 11 O -0.375 6.375 12 N -0.379 5.379 13 C -0.005 4.005 14 C -0.152 4.152 15 C -0.049 4.049 16 C -0.560 4.560 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.542 5.542 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.189 1.189 24 H 0.089 0.911 25 H 0.047 0.953 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.047 0.953 30 H 0.155 0.845 31 H 0.177 0.823 32 H 0.181 0.819 33 H 0.230 0.770 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.033 0.967 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.939 18.558 -14.190 27.204 hybrid contribution -0.591 0.825 0.496 1.130 sum -14.531 19.382 -13.694 27.827 Atomic orbital electron populations 1.22441 0.85028 1.03022 1.00865 1.59094 1.08517 1.14166 1.39676 1.22420 1.01360 0.86545 1.00822 1.19086 0.91337 0.91684 0.89102 1.22725 1.04259 1.03048 0.93820 1.22761 0.91085 0.89656 0.99513 1.67710 1.13254 1.14833 1.24022 1.23100 0.94793 0.97305 0.86676 1.21238 1.02182 0.98093 0.95638 1.17787 0.79572 0.80963 0.87983 1.90839 1.52013 1.53733 1.40935 1.46133 1.51096 1.30436 1.10242 1.21633 0.99363 0.97752 0.81744 1.21717 0.97848 0.94522 1.01128 1.19499 0.96596 0.97040 0.91754 1.21107 1.29316 1.10815 0.94741 0.90988 1.25031 0.94577 0.94621 0.99264 1.69913 1.34520 1.21271 1.28535 0.86775 0.78237 0.80354 0.83940 1.20253 1.21397 1.18871 0.91080 0.95255 0.90272 0.90271 0.91061 0.95289 0.84507 0.82349 0.81862 0.76988 0.91722 0.91715 0.92085 0.92058 0.96303 0.96737 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.34 60.07 0.56 0.85 16 2 N -0.49 -5.58 3.08 -186.40 -0.57 -6.15 16 3 C 0.03 0.31 9.38 60.06 0.56 0.88 16 4 C 0.19 2.14 4.73 -83.40 -0.39 1.75 16 5 C -0.22 -1.83 8.65 -39.28 -0.34 -2.17 16 6 C 0.13 1.06 11.15 -17.57 -0.20 0.86 16 7 N -0.49 -5.18 10.34 -13.01 -0.13 -5.32 16 8 C 0.14 1.49 10.71 -17.16 -0.18 1.31 16 9 C -0.17 -2.03 5.91 -104.66 -0.62 -2.65 16 10 C 0.55 8.22 7.77 -12.50 -0.10 8.12 16 11 O -0.50 -9.07 15.16 5.28 0.08 -8.99 16 12 N -0.73 -10.07 5.51 -61.38 -0.34 -10.41 16 13 C 0.12 1.94 5.67 -4.04 -0.02 1.92 16 14 C -0.11 -2.11 5.27 -26.73 -0.14 -2.26 16 15 C -0.01 -0.26 4.04 -27.89 -0.11 -0.37 16 16 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 17 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 18 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 19 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 20 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 23 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.03 0.20 7.18 -51.93 -0.37 -0.17 16 26 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 27 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.03 0.20 7.40 -51.93 -0.38 -0.18 16 30 H 0.14 0.83 7.16 -52.49 -0.38 0.46 16 31 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 32 H 0.16 1.38 6.42 -52.49 -0.34 1.04 16 33 H 0.40 4.41 6.54 -40.82 -0.27 4.14 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 39 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 332.96 15.07 5.02 5.02 Total: -1.00 -34.14 332.96 -7.15 -41.29 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -5.89 Total: -0.53 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -1.41 Total: -4.96 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: -0.27 Total: -48.93 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.08 Total: -8.99 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.14 -7.15 -41.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183538821.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.499 kcal (2) G-P(sol) polarization free energy of solvation -34.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds