Wall clock time and date at job start Mon Mar 30 2020 01:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.38459 * 110.99969 * 236.04369 * 2 1 3 5 5 C 1.39504 * 120.94505 * 60.00393 * 4 2 1 6 6 C 1.37778 * 119.20745 * 179.97438 * 5 4 2 7 7 N 1.32185 * 121.21954 * 359.97438 * 6 5 4 8 8 C 1.31634 * 122.12042 * 0.02562 * 7 6 5 9 9 C 1.39528 * 120.62348 * 359.74138 * 8 7 6 10 10 C 1.47454 * 120.63588 * 180.26671 * 9 8 7 11 11 O 1.21600 * 120.00407 * 180.24807 * 10 9 8 12 12 N 1.34781 * 120.00140 * 0.24433 * 10 9 8 13 13 C 1.46492 * 120.00060 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47030 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47179 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47039 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00050 * 0.02562 * 16 15 14 18 18 C 1.37887 * 120.00174 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99979 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 119.99518 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47129 * 90.00376 * 20 18 16 22 22 H 1.48501 * 109.46761 * 209.99953 * 20 18 16 23 23 H 1.48492 * 109.47646 * 329.99933 * 20 18 16 24 24 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 25 25 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 26 26 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 27 27 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 28 28 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 29 29 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 30 30 H 1.07996 * 120.39973 * 359.94949 * 5 4 2 31 31 H 1.08000 * 119.39080 * 179.97438 * 6 5 4 32 32 H 1.07997 * 119.69057 * 179.97438 * 8 7 6 33 33 H 0.96998 * 119.99573 * 0.02562 * 12 10 9 34 34 H 1.09000 * 109.47324 * 299.99602 * 13 12 10 35 35 H 1.09003 * 109.47581 * 60.00081 * 13 12 10 36 36 H 1.09008 * 109.46796 * 299.99624 * 14 13 12 37 37 H 1.08998 * 109.47393 * 59.99392 * 14 13 12 38 38 H 1.09000 * 109.47233 * 299.99503 * 15 14 13 39 39 H 1.09003 * 109.47524 * 59.99892 * 15 14 13 40 40 H 0.97004 * 119.99959 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9652 -0.7220 -1.0722 5 6 1.6638 -0.3563 -2.3843 6 6 2.1773 -1.1000 -3.4243 7 7 2.9483 -2.1501 -3.2004 8 6 3.2645 -2.5395 -1.9834 9 6 2.7937 -1.8434 -0.8696 10 6 3.1524 -2.2760 0.4936 11 8 2.7320 -1.6635 1.4563 12 7 3.9463 -3.3503 0.6728 13 6 4.3023 -3.7804 2.0272 14 6 5.2055 -5.0130 1.9500 15 6 5.5767 -5.4625 3.3645 16 6 6.4658 -6.6769 3.2885 17 1 6.7392 -7.0868 2.3274 18 6 6.9313 -7.2642 4.4460 19 7 7.7076 -8.3236 4.3796 20 14 6.4591 -6.5548 6.1082 21 1 5.2060 -7.1955 6.5820 22 1 7.5476 -6.8146 7.0845 23 1 6.2485 -5.0905 5.9799 24 1 -0.3634 -1.0252 0.0708 25 1 -0.3633 0.4513 -0.9233 26 1 -0.3633 0.5740 0.8525 27 1 1.5899 1.9163 0.8525 28 1 3.0829 1.3431 0.0709 29 1 1.7045 1.8723 -0.9233 30 1 1.0353 0.4992 -2.5825 31 1 1.9455 -0.8197 -4.4412 32 1 3.8973 -3.4038 -1.8458 33 1 4.2820 -3.8387 -0.0951 34 1 4.8305 -2.9748 2.5372 35 1 3.3959 -4.0277 2.5799 36 1 4.6776 -5.8188 1.4398 37 1 6.1118 -4.7653 1.3974 38 1 6.1044 -4.6569 3.8751 39 1 4.6702 -5.7104 3.9167 40 1 8.0348 -8.7370 5.1939 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183538821.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:00 Heat of formation + Delta-G solvation = -12.713611 kcal Electronic energy + Delta-G solvation = -20843.029708 eV Core-core repulsion = 17657.152814 eV Total energy + Delta-G solvation = -3185.876894 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.90532 -40.01564 -38.43894 -36.88536 -35.12801 -33.58891 -32.41756 -32.09500 -28.98229 -28.59820 -26.30289 -25.65738 -24.30838 -22.56829 -22.18830 -21.47381 -19.12492 -18.73056 -18.03840 -17.69272 -16.74664 -16.60493 -16.17020 -16.12544 -15.84735 -15.55150 -15.29253 -14.93811 -14.76771 -14.51436 -14.39080 -13.80213 -13.57642 -13.35813 -13.29641 -13.01424 -12.73559 -12.71399 -12.67275 -11.92288 -11.77389 -11.57705 -11.32188 -11.19926 -10.75170 -10.63979 -10.50200 -10.32641 -9.98550 -9.38399 -8.28423 -6.32159 -0.39579 0.01091 1.37775 1.39351 1.51339 1.92145 2.16839 2.37414 2.69179 2.77642 3.07439 3.30524 3.72124 3.82015 3.85874 4.06221 4.13077 4.23078 4.29717 4.33960 4.48229 4.52305 4.53342 4.55218 4.59902 4.88035 4.91025 4.91250 4.93509 5.04990 5.07397 5.40377 5.43013 5.52563 5.57673 5.66473 5.86179 6.20058 6.28824 6.59383 6.76132 6.81190 7.29056 7.32666 8.88088 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028803 B = 0.003257 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.888072 B = 8594.679778 C = 9374.989870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.525 5.525 3 C 0.037 3.963 4 C 0.183 3.817 5 C -0.207 4.207 6 C 0.132 3.868 7 N -0.508 5.508 8 C 0.143 3.857 9 C -0.191 4.191 10 C 0.554 3.446 11 O -0.540 6.540 12 N -0.719 5.719 13 C 0.132 3.868 14 C -0.101 4.101 15 C -0.012 4.012 16 C -0.530 4.530 17 H 0.038 0.962 18 C 0.004 3.996 19 N -0.951 5.951 20 Si 0.947 3.053 21 H -0.267 1.267 22 H -0.285 1.285 23 H -0.248 1.248 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.166 0.834 31 H 0.194 0.806 32 H 0.177 0.823 33 H 0.409 0.591 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.021 0.979 39 H 0.020 0.980 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.742 20.945 -15.850 30.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.246 5.246 3 C -0.109 4.109 4 C 0.079 3.921 5 C -0.229 4.229 6 C -0.023 4.023 7 N -0.217 5.217 8 C -0.016 4.016 9 C -0.197 4.197 10 C 0.340 3.660 11 O -0.417 6.417 12 N -0.372 5.372 13 C 0.008 3.992 14 C -0.139 4.139 15 C -0.050 4.050 16 C -0.568 4.568 17 H 0.056 0.944 18 C -0.193 4.193 19 N -0.592 5.592 20 Si 0.771 3.229 21 H -0.192 1.192 22 H -0.211 1.211 23 H -0.171 1.171 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.184 0.816 31 H 0.211 0.789 32 H 0.194 0.806 33 H 0.246 0.754 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.039 0.961 39 H 0.038 0.962 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.489 20.600 -15.294 29.969 hybrid contribution -0.114 0.188 0.693 0.727 sum -15.604 20.788 -14.601 29.813 Atomic orbital electron populations 1.22443 0.83878 1.02414 1.02388 1.59027 1.09777 1.15274 1.40555 1.22413 1.00254 0.85887 1.02327 1.19319 0.91086 0.91381 0.90318 1.22949 1.03967 1.03603 0.92382 1.23386 0.89373 0.88384 1.01182 1.67793 1.14285 1.16013 1.23652 1.23265 0.94558 0.97414 0.86385 1.21114 1.04456 0.99835 0.94341 1.18182 0.78684 0.80307 0.88822 1.90809 1.53564 1.54954 1.42386 1.45955 1.51016 1.30545 1.09715 1.21268 0.98422 0.96418 0.83083 1.21496 0.98544 0.95526 0.98358 1.19462 0.95708 0.94999 0.94803 1.21480 1.29705 1.12231 0.93421 0.94398 1.25987 0.94579 0.94980 1.03711 1.70060 1.36245 1.23069 1.29818 0.85695 0.78159 0.80424 0.78623 1.19241 1.21051 1.17104 0.92618 0.92821 0.89717 0.89707 0.92776 0.92891 0.81639 0.78875 0.80591 0.75385 0.92418 0.92345 0.91666 0.91677 0.96079 0.96192 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.34 127.69 1.19 1.75 16 2 N -0.53 -11.26 3.08 -743.65 -2.29 -13.55 16 3 C 0.04 0.61 9.38 127.69 1.20 1.81 16 4 C 0.18 3.80 4.73 39.05 0.18 3.99 16 5 C -0.21 -2.86 8.65 22.47 0.19 -2.66 16 6 C 0.13 1.79 11.15 84.53 0.94 2.74 16 7 N -0.51 -9.63 10.34 -195.07 -2.02 -11.65 16 8 C 0.14 2.84 10.71 85.03 0.91 3.75 16 9 C -0.19 -4.53 5.91 -19.89 -0.12 -4.65 16 10 C 0.55 16.36 7.77 86.67 0.67 17.03 16 11 O -0.54 -19.73 15.16 -4.03 -0.06 -19.79 16 12 N -0.72 -19.51 5.51 -466.35 -2.57 -22.07 16 13 C 0.13 4.25 5.67 86.38 0.49 4.74 16 14 C -0.10 -3.69 5.27 30.59 0.16 -3.53 16 15 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 16 C -0.53 -30.28 9.66 25.60 0.25 -30.04 16 17 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 18 C 0.00 0.24 5.47 84.66 0.46 0.71 16 19 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 20 Si 0.95 44.65 27.47 68.60 1.88 46.53 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 22 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 23 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 24 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.05 0.57 7.18 -2.39 -0.02 0.56 16 26 H 0.08 1.22 8.12 -2.38 -0.02 1.20 16 27 H 0.08 1.25 8.12 -2.38 -0.02 1.23 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.05 0.59 7.40 -2.39 -0.02 0.57 16 30 H 0.17 1.27 7.16 -2.91 -0.02 1.25 16 31 H 0.19 1.17 8.06 -2.91 -0.02 1.15 16 32 H 0.18 2.76 6.42 -2.91 -0.02 2.74 16 33 H 0.41 8.74 6.54 -92.71 -0.61 8.14 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 36 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 37 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 39 H 0.02 0.89 7.57 -2.39 -0.02 0.88 16 40 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -74.89 332.96 2.29 -72.60 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.38 Total: 12.19 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 6.66 Total: -4.77 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -6.58 Total: -106.76 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.06 Total: -19.79 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.53 kcal Total: -74.89 2.29 -72.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183538821.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.889 kcal (2) G-P(sol) polarization free energy of solvation -74.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds