Wall clock time and date at job start Mon Mar 30 2020 01:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 120.00189 * 2 1 4 4 C 1.50703 * 109.47220 * 89.99770 * 3 2 1 5 5 H 1.08001 * 119.99786 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99982 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00131 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99880 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47186 * 89.99620 * 8 6 4 10 10 H 1.48498 * 109.46854 * 209.99374 * 8 6 4 11 11 H 1.48501 * 109.46876 * 329.99232 * 8 6 4 12 12 C 1.34777 * 120.00125 * 179.97438 * 2 1 3 13 13 O 1.21570 * 120.00461 * 185.39804 * 12 2 1 14 14 C 1.47711 * 119.99843 * 5.40261 * 12 2 1 15 15 N 1.32049 * 126.64806 * 5.89852 * 14 12 2 16 16 N 1.28671 * 110.10588 * 179.85651 * 15 14 12 17 17 H 0.97004 * 124.94664 * 179.71462 * 16 15 14 18 18 C 1.34770 * 110.10390 * 359.70972 * 16 15 14 19 19 C 1.35167 * 107.18705 * 0.35312 * 18 16 15 20 20 C 1.50391 * 126.24692 * 178.44987 * 19 18 16 21 21 C 1.53222 * 108.96043 * 28.40661 * 20 19 18 22 22 C 1.52657 * 109.64438 * 271.14142 * 21 20 19 23 23 C 1.52610 * 110.81356 * 61.53682 * 22 21 20 24 24 C 1.50693 * 127.34211 * 181.09797 * 18 16 15 25 25 H 1.09004 * 109.46474 * 95.37579 * 1 2 3 26 26 H 1.09000 * 109.46974 * 215.37313 * 1 2 3 27 27 H 1.09001 * 109.47145 * 335.37747 * 1 2 3 28 28 H 1.08995 * 109.47408 * 209.99998 * 3 2 1 29 29 H 1.08999 * 109.47144 * 329.99762 * 3 2 1 30 30 H 0.97005 * 120.00084 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.74946 * 268.46921 * 20 19 18 32 32 H 1.09004 * 109.50317 * 148.19357 * 20 19 18 33 33 H 1.08995 * 109.44797 * 151.08420 * 21 20 19 34 34 H 1.09006 * 109.41031 * 31.17258 * 21 20 19 35 35 H 1.08995 * 109.20890 * 301.18937 * 22 21 20 36 36 H 1.08997 * 109.20810 * 181.87725 * 22 21 20 37 37 H 1.08999 * 109.41080 * 273.51266 * 23 22 21 38 38 H 1.08996 * 109.41706 * 153.72757 * 23 22 21 39 39 H 1.09003 * 109.52794 * 346.48781 * 24 18 16 40 40 H 1.08999 * 109.52332 * 106.62215 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 1.4208 5 1 2.0981 1.0958 2.2417 6 6 3.1261 2.8780 1.6727 7 7 3.5534 3.6180 0.6732 8 14 3.4380 3.4169 3.4340 9 1 4.7334 2.8602 3.8999 10 1 3.4853 4.8998 3.4968 11 1 2.3432 2.9192 4.3051 12 6 2.1389 -1.1672 0.0005 13 8 3.3506 -1.1696 0.0996 14 6 1.4053 -2.4436 -0.1194 15 7 0.1121 -2.5916 -0.3416 16 7 -0.1882 -3.8418 -0.3899 17 1 -1.0799 -4.1938 -0.5384 18 6 0.9165 -4.5911 -0.2043 19 6 1.9509 -3.7398 -0.0246 20 6 3.3793 -4.1216 0.2509 21 6 3.6575 -5.4926 -0.3742 22 6 3.3172 -6.5924 0.6284 23 6 1.8373 -6.5496 0.9986 24 6 1.0125 -6.0949 -0.2094 25 1 -0.3632 -0.0963 -1.0232 26 1 -0.3633 -0.8380 0.5949 27 1 -0.3633 0.9342 0.4282 28 1 3.1499 1.1384 -0.5138 29 1 1.6085 2.0283 -0.5139 30 1 4.0303 4.4440 0.8504 31 1 3.5464 -4.1709 1.3269 32 1 4.0456 -3.3790 -0.1879 33 1 4.7112 -5.5613 -0.6442 34 1 3.0453 -5.6143 -1.2679 35 1 3.9162 -6.4549 1.5286 36 1 3.5490 -7.5625 0.1890 37 1 1.6898 -5.8505 1.8217 38 1 1.5118 -7.5434 1.3060 39 1 0.0123 -6.5241 -0.1499 40 1 1.4969 -6.4259 -1.1280 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190231099.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:20 Heat of formation + Delta-G solvation = 32.654207 kcal Electronic energy + Delta-G solvation = -21928.616612 eV Core-core repulsion = 18744.707014 eV Total energy + Delta-G solvation = -3183.909598 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.65950 -38.47190 -37.59770 -34.70134 -32.89731 -32.43942 -30.99211 -30.33824 -27.68835 -25.84745 -25.41592 -24.43773 -23.92048 -21.72747 -19.83147 -19.57096 -18.39157 -17.55197 -16.44662 -16.10177 -15.89553 -15.17699 -14.97984 -14.65928 -14.19745 -13.90912 -13.48687 -13.30121 -13.22845 -12.57367 -12.40500 -12.12123 -12.04800 -11.92213 -11.72554 -11.20670 -11.19741 -11.01492 -10.84946 -10.75212 -10.51109 -10.48817 -10.15002 -10.03169 -9.55730 -9.01920 -8.98524 -8.46626 -8.36142 -7.50389 -5.96803 -4.00904 1.93642 2.35061 2.98469 3.36927 3.42421 3.45576 4.01630 4.16513 4.49237 4.54368 4.61384 4.70851 4.87142 5.02067 5.09357 5.24856 5.30793 5.36826 5.37961 5.54533 5.70524 5.83061 5.87572 6.01165 6.03220 6.07677 6.13448 6.19494 6.25410 6.39237 6.44991 6.52543 6.76816 7.08887 7.22942 7.50882 7.65272 7.99257 8.08608 8.31287 8.53240 8.98026 9.18280 9.63716 11.11240 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025290 B = 0.004531 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.872015 B = 6177.688133 C = 6700.479873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.588 5.588 3 C 0.246 3.754 4 C -0.522 4.522 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.585 3.415 13 O -0.530 6.530 14 C 0.008 3.992 15 N -0.260 5.260 16 N -0.390 5.390 17 H 0.439 0.561 18 C 0.004 3.996 19 C -0.140 4.140 20 C -0.047 4.047 21 C -0.122 4.122 22 C -0.120 4.120 23 C -0.114 4.114 24 C -0.046 4.046 25 H 0.044 0.956 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.034 0.966 30 H 0.263 0.737 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.482 -21.314 -2.607 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.319 5.319 3 C 0.127 3.873 4 C -0.561 4.561 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.200 1.200 12 C 0.369 3.631 13 O -0.406 6.406 14 C -0.153 4.153 15 N -0.096 5.096 16 N -0.102 5.102 17 H 0.282 0.718 18 C -0.122 4.122 19 C -0.150 4.150 20 C -0.085 4.085 21 C -0.160 4.160 22 C -0.157 4.157 23 C -0.152 4.152 24 C -0.085 4.085 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.684 -20.446 -2.764 22.017 hybrid contribution 0.126 -0.149 1.001 1.020 sum -7.558 -20.595 -1.764 22.009 Atomic orbital electron populations 1.21732 0.80616 1.02281 1.00647 1.48033 1.06756 1.07222 1.69896 1.19336 0.92468 0.77909 0.97593 1.21440 1.36253 1.06112 0.92295 0.92430 1.24923 0.95426 0.96368 0.97378 1.69936 1.38562 1.14405 1.30667 0.86500 0.78763 0.77439 0.84730 1.20534 1.21202 1.19973 1.16907 0.86348 0.81508 0.78337 1.90736 1.12968 1.86172 1.50718 1.22210 0.89808 0.95677 1.07620 1.74001 1.16653 0.98799 1.20109 1.43250 1.10018 1.03633 1.53344 0.71750 1.21042 0.87242 0.95162 1.08761 1.19877 0.96733 0.90585 1.07764 1.20006 0.90985 0.96540 1.01019 1.21706 1.01392 0.94315 0.98575 1.21518 0.95807 0.98678 0.99743 1.21513 0.95165 1.01172 0.97366 1.20191 1.00790 0.87036 1.00442 0.93789 0.91280 0.91394 0.93829 0.94785 0.92785 0.90958 0.89009 0.91656 0.91550 0.91710 0.92274 0.91349 0.91497 0.91256 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.74 9.31 59.85 0.56 2.29 16 2 N -0.59 -13.85 2.86 -184.12 -0.53 -14.38 16 3 C 0.25 6.76 5.10 -5.19 -0.03 6.74 16 4 C -0.52 -15.39 9.39 -34.44 -0.32 -15.72 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 8 Si 0.90 22.44 29.54 -169.99 -5.02 17.41 16 9 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.58 13.67 7.66 -12.39 -0.09 13.58 16 13 O -0.53 -13.99 14.86 5.30 0.08 -13.92 16 14 C 0.01 0.15 6.75 -82.88 -0.56 -0.41 16 15 N -0.26 -4.16 9.04 33.35 0.30 -3.86 16 16 N -0.39 -4.60 6.83 33.42 0.23 -4.37 16 17 H 0.44 3.30 8.96 -190.31 -1.71 1.59 16 18 C 0.00 0.05 6.38 -82.40 -0.53 -0.48 16 19 C -0.14 -2.21 5.68 -104.84 -0.60 -2.80 16 20 C -0.05 -0.70 5.36 -27.92 -0.15 -0.85 16 21 C -0.12 -1.31 5.54 -26.79 -0.15 -1.46 16 22 C -0.12 -1.03 5.65 -27.11 -0.15 -1.18 16 23 C -0.11 -0.93 5.64 -26.84 -0.15 -1.08 16 24 C -0.05 -0.37 5.55 -27.80 -0.15 -0.52 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.07 1.23 5.95 -51.93 -0.31 0.92 16 27 H 0.07 1.28 8.03 -51.93 -0.42 0.86 16 28 H 0.04 1.32 7.50 -51.93 -0.39 0.93 16 29 H 0.03 0.94 8.07 -51.93 -0.42 0.52 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.07 1.07 7.83 -51.93 -0.41 0.66 16 32 H 0.09 1.61 6.80 -51.93 -0.35 1.25 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.69 5.65 -51.93 -0.29 0.40 16 35 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.68 7.80 -51.93 -0.40 0.27 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 0.66 6.35 -51.93 -0.33 0.33 16 LS Contribution 319.04 15.07 4.81 4.81 Total: -1.00 -34.65 319.04 -8.92 -43.57 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -7.11 Total: -2.58 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -2.42 Total: -0.21 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: 0.74 Total: -49.08 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.08 Total: -13.92 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.65 -8.92 -43.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190231099.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.224 kcal (2) G-P(sol) polarization free energy of solvation -34.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds