Wall clock time and date at job start Mon Mar 30 2020 01:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 120.00189 * 2 1 4 4 C 1.50703 * 109.47220 * 89.99770 * 3 2 1 5 5 H 1.08001 * 119.99786 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99982 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00131 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99880 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47186 * 89.99620 * 8 6 4 10 10 H 1.48498 * 109.46854 * 209.99374 * 8 6 4 11 11 H 1.48501 * 109.46876 * 329.99232 * 8 6 4 12 12 C 1.34777 * 120.00125 * 179.97438 * 2 1 3 13 13 O 1.21570 * 120.00461 * 185.39804 * 12 2 1 14 14 C 1.47711 * 119.99843 * 5.40261 * 12 2 1 15 15 N 1.32049 * 126.64806 * 5.89852 * 14 12 2 16 16 N 1.28671 * 110.10588 * 179.85651 * 15 14 12 17 17 H 0.97004 * 124.94664 * 179.71462 * 16 15 14 18 18 C 1.34770 * 110.10390 * 359.70972 * 16 15 14 19 19 C 1.35167 * 107.18705 * 0.35312 * 18 16 15 20 20 C 1.50391 * 126.24692 * 178.44987 * 19 18 16 21 21 C 1.53222 * 108.96043 * 28.40661 * 20 19 18 22 22 C 1.52657 * 109.64438 * 271.14142 * 21 20 19 23 23 C 1.52610 * 110.81356 * 61.53682 * 22 21 20 24 24 C 1.50693 * 127.34211 * 181.09797 * 18 16 15 25 25 H 1.09004 * 109.46474 * 95.37579 * 1 2 3 26 26 H 1.09000 * 109.46974 * 215.37313 * 1 2 3 27 27 H 1.09001 * 109.47145 * 335.37747 * 1 2 3 28 28 H 1.08995 * 109.47408 * 209.99998 * 3 2 1 29 29 H 1.08999 * 109.47144 * 329.99762 * 3 2 1 30 30 H 0.97005 * 120.00084 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.74946 * 268.46921 * 20 19 18 32 32 H 1.09004 * 109.50317 * 148.19357 * 20 19 18 33 33 H 1.08995 * 109.44797 * 151.08420 * 21 20 19 34 34 H 1.09006 * 109.41031 * 31.17258 * 21 20 19 35 35 H 1.08995 * 109.20890 * 301.18937 * 22 21 20 36 36 H 1.08997 * 109.20810 * 181.87725 * 22 21 20 37 37 H 1.08999 * 109.41080 * 273.51266 * 23 22 21 38 38 H 1.08996 * 109.41706 * 153.72757 * 23 22 21 39 39 H 1.09003 * 109.52794 * 346.48781 * 24 18 16 40 40 H 1.08999 * 109.52332 * 106.62215 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 1.4208 5 1 2.0981 1.0958 2.2417 6 6 3.1261 2.8780 1.6727 7 7 3.5534 3.6180 0.6732 8 14 3.4380 3.4169 3.4340 9 1 4.7334 2.8602 3.8999 10 1 3.4853 4.8998 3.4968 11 1 2.3432 2.9192 4.3051 12 6 2.1389 -1.1672 0.0005 13 8 3.3506 -1.1696 0.0996 14 6 1.4053 -2.4436 -0.1194 15 7 0.1121 -2.5916 -0.3416 16 7 -0.1882 -3.8418 -0.3899 17 1 -1.0799 -4.1938 -0.5384 18 6 0.9165 -4.5911 -0.2043 19 6 1.9509 -3.7398 -0.0246 20 6 3.3793 -4.1216 0.2509 21 6 3.6575 -5.4926 -0.3742 22 6 3.3172 -6.5924 0.6284 23 6 1.8373 -6.5496 0.9986 24 6 1.0125 -6.0949 -0.2094 25 1 -0.3632 -0.0963 -1.0232 26 1 -0.3633 -0.8380 0.5949 27 1 -0.3633 0.9342 0.4282 28 1 3.1499 1.1384 -0.5138 29 1 1.6085 2.0283 -0.5139 30 1 4.0303 4.4440 0.8504 31 1 3.5464 -4.1709 1.3269 32 1 4.0456 -3.3790 -0.1879 33 1 4.7112 -5.5613 -0.6442 34 1 3.0453 -5.6143 -1.2679 35 1 3.9162 -6.4549 1.5286 36 1 3.5490 -7.5625 0.1890 37 1 1.6898 -5.8505 1.8217 38 1 1.5118 -7.5434 1.3060 39 1 0.0123 -6.5241 -0.1499 40 1 1.4969 -6.4259 -1.1280 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190231099.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:19 Heat of formation + Delta-G solvation = 9.110183 kcal Electronic energy + Delta-G solvation = -21929.637557 eV Core-core repulsion = 18744.707014 eV Total energy + Delta-G solvation = -3184.930543 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.83360 -40.30622 -38.45254 -36.62782 -34.78130 -33.86066 -31.98252 -31.49077 -29.70695 -27.51278 -26.36520 -25.87645 -25.29377 -23.48847 -20.79902 -20.46723 -19.99848 -18.70502 -18.68298 -17.59060 -17.12369 -17.04543 -16.18080 -16.08716 -15.60283 -15.46549 -14.75603 -14.30731 -14.24801 -14.18026 -14.00480 -13.76115 -13.57480 -13.22604 -13.19102 -12.88417 -12.63567 -12.52536 -12.25345 -12.07646 -11.94674 -11.72622 -11.60175 -11.32591 -11.21455 -10.75471 -10.65344 -10.27282 -9.61990 -9.41084 -8.22787 -6.37870 0.59205 1.14045 1.35909 1.39652 1.49514 1.94502 2.29613 2.46154 2.48431 3.06200 3.38849 3.69024 3.89728 4.03189 4.11499 4.24049 4.26606 4.42609 4.47845 4.55941 4.67188 4.71928 4.90068 4.94870 4.95641 5.01186 5.06547 5.14512 5.17224 5.18647 5.32169 5.38123 5.46430 5.51978 5.55233 5.63627 5.81469 6.04085 6.20588 6.64910 6.71093 6.91380 7.24937 7.40858 8.84586 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025290 B = 0.004531 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.872015 B = 6177.688133 C = 6700.479873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.598 5.598 3 C 0.261 3.739 4 C -0.543 4.543 5 H 0.049 0.951 6 C 0.010 3.990 7 N -0.927 5.927 8 Si 0.970 3.030 9 H -0.278 1.278 10 H -0.271 1.271 11 H -0.265 1.265 12 C 0.576 3.424 13 O -0.578 6.578 14 C -0.031 4.031 15 N -0.262 5.262 16 N -0.361 5.361 17 H 0.462 0.538 18 C 0.035 3.965 19 C -0.167 4.167 20 C -0.046 4.046 21 C -0.115 4.115 22 C -0.118 4.118 23 C -0.113 4.113 24 C -0.044 4.044 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.001 0.999 29 H 0.028 0.972 30 H 0.269 0.731 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.611 -24.357 -1.977 26.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.329 5.329 3 C 0.140 3.860 4 C -0.582 4.582 5 H 0.067 0.933 6 C -0.189 4.189 7 N -0.567 5.567 8 Si 0.794 3.206 9 H -0.204 1.204 10 H -0.195 1.195 11 H -0.189 1.189 12 C 0.363 3.637 13 O -0.457 6.457 14 C -0.190 4.190 15 N -0.100 5.100 16 N -0.077 5.077 17 H 0.311 0.689 18 C -0.092 4.092 19 C -0.177 4.177 20 C -0.085 4.085 21 C -0.152 4.152 22 C -0.155 4.155 23 C -0.151 4.151 24 C -0.083 4.083 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.085 0.915 28 H 0.020 0.980 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.116 0.884 39 H 0.126 0.874 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.875 -23.503 -2.147 25.583 hybrid contribution 0.742 0.723 0.742 1.274 sum -9.133 -22.780 -1.404 24.582 Atomic orbital electron populations 1.21870 0.77788 1.02834 1.02184 1.48057 1.08495 1.06143 1.70202 1.18846 0.91020 0.79709 0.96413 1.21639 1.37183 1.06641 0.92726 0.93311 1.25852 0.94696 0.96176 1.02200 1.70048 1.38757 1.14834 1.33047 0.85390 0.78639 0.77666 0.78951 1.20429 1.19528 1.18897 1.17555 0.86213 0.82873 0.77059 1.90687 1.15159 1.87176 1.52668 1.21598 0.91224 0.94489 1.11669 1.73842 1.15054 1.00928 1.20137 1.43348 1.11301 1.02416 1.50681 0.68889 1.21553 0.85607 0.96918 1.05160 1.20099 0.98085 0.90139 1.09355 1.19936 0.90166 0.98052 1.00313 1.21672 1.01822 0.92466 0.99256 1.21513 0.96398 0.98720 0.98864 1.21529 0.94679 1.02282 0.96629 1.20444 1.03323 0.83418 1.01104 0.91808 0.89812 0.91498 0.98049 0.95409 0.92249 0.92090 0.93230 0.91482 0.90670 0.92405 0.89610 0.93541 0.88418 0.87394 0.87695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.68 9.31 127.77 1.19 4.87 16 2 N -0.60 -29.66 2.86 -854.71 -2.44 -32.10 16 3 C 0.26 15.26 5.10 85.63 0.44 15.70 16 4 C -0.54 -33.38 9.39 25.60 0.24 -33.13 16 5 H 0.05 3.01 7.81 -2.91 -0.02 2.98 16 6 C 0.01 0.59 5.46 84.65 0.46 1.05 16 7 N -0.93 -57.86 13.29 21.45 0.28 -57.58 16 8 Si 0.97 46.71 29.54 68.60 2.03 48.74 16 9 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.26 -12.23 7.11 99.48 0.71 -11.53 16 12 C 0.58 28.65 7.66 86.75 0.66 29.31 16 13 O -0.58 -33.19 14.86 -3.94 -0.06 -33.25 16 14 C -0.03 -1.22 6.75 42.28 0.29 -0.93 16 15 N -0.26 -8.04 9.04 -48.41 -0.44 -8.48 16 16 N -0.36 -7.37 6.83 -48.19 -0.33 -7.70 16 17 H 0.46 4.82 8.96 -219.88 -1.97 2.85 16 18 C 0.04 0.74 6.38 41.40 0.26 1.01 16 19 C -0.17 -5.28 5.68 -20.00 -0.11 -5.39 16 20 C -0.05 -1.43 5.36 29.83 0.16 -1.27 16 21 C -0.11 -2.33 5.54 30.55 0.17 -2.16 16 22 C -0.12 -1.67 5.65 30.35 0.17 -1.50 16 23 C -0.11 -1.39 5.64 30.52 0.17 -1.22 16 24 C -0.04 -0.50 5.55 29.90 0.17 -0.33 16 25 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 26 H 0.08 2.96 5.95 -2.39 -0.01 2.94 16 27 H 0.07 2.54 8.03 -2.39 -0.02 2.52 16 28 H 0.00 0.09 7.50 -2.39 -0.02 0.07 16 29 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 30 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 31 H 0.06 1.94 7.83 -2.39 -0.02 1.92 16 32 H 0.05 1.92 6.80 -2.38 -0.02 1.90 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 1.38 5.65 -2.38 -0.01 1.37 16 35 H 0.06 0.92 8.09 -2.39 -0.02 0.90 16 36 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.05 0.80 7.80 -2.39 -0.02 0.78 16 38 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.11 0.98 6.35 -2.39 -0.02 0.97 16 Total: -1.00 -81.45 319.04 2.40 -79.05 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -0.91 Total: 5.32 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 4.27 Total: 5.98 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -2.92 Total: -105.85 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -0.06 Total: -33.25 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -81.45 2.40 -79.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190231099.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.164 kcal (2) G-P(sol) polarization free energy of solvation -81.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds