Wall clock time and date at job start Mon Mar 30 2020 01:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39930 * 125.75327 * 2 1 4 4 C 1.30443 * 108.89688 * 179.97438 * 3 2 1 5 5 C 1.41286 * 108.02288 * 0.02562 * 4 3 2 6 6 C 1.47436 * 126.41554 * 179.73887 * 5 4 3 7 7 O 1.21604 * 119.99904 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99941 * 0.02562 * 6 5 4 9 9 C 1.46495 * 120.00041 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47053 * 179.97438 * 9 8 6 11 11 C 1.53003 * 109.46916 * 180.02562 * 10 9 8 12 12 C 1.50708 * 109.47010 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99712 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99978 * 179.97438 * 12 11 10 15 15 N 1.31519 * 120.00025 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99917 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47236 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46969 * 120.00623 * 16 14 12 19 19 H 1.48496 * 109.47027 * 240.00525 * 16 14 12 20 20 C 1.34260 * 125.75288 * 179.97438 * 2 1 3 21 21 C 1.50696 * 126.29148 * 0.02562 * 20 2 1 22 22 C 1.53006 * 117.49987 * 311.19614 * 21 20 2 23 23 C 1.53001 * 117.49693 * 242.53483 * 21 20 2 24 24 H 1.09000 * 109.47293 * 95.38559 * 1 2 3 25 25 H 1.08996 * 109.46904 * 215.38685 * 1 2 3 26 26 H 1.09004 * 109.46844 * 335.38455 * 1 2 3 27 27 H 1.07999 * 125.99151 * 179.97438 * 4 3 2 28 28 H 0.96998 * 119.99944 * 0.02562 * 8 6 5 29 29 H 1.09003 * 109.47214 * 300.00527 * 9 8 6 30 30 H 1.09002 * 109.47126 * 60.00464 * 9 8 6 31 31 H 1.08996 * 109.47352 * 299.99976 * 10 9 8 32 32 H 1.09001 * 109.47239 * 60.00499 * 10 9 8 33 33 H 1.08995 * 109.47516 * 299.99872 * 11 10 9 34 34 H 1.09002 * 109.47243 * 60.00480 * 11 10 9 35 35 H 0.96996 * 119.99899 * 179.97438 * 15 14 12 36 36 H 1.09002 * 115.54886 * 96.86724 * 21 20 2 37 37 H 1.09001 * 117.49794 * 0.02562 * 22 21 20 38 38 H 1.08996 * 117.49424 * 145.02181 * 22 21 20 39 39 H 1.08997 * 117.49870 * 214.97502 * 23 21 20 40 40 H 1.08992 * 117.49946 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2826 1.1356 0.0000 4 6 3.5310 0.7573 0.0006 5 6 3.5598 -0.6552 0.0003 6 6 4.7638 -1.5061 -0.0046 7 8 4.6525 -2.7171 -0.0047 8 7 5.9878 -0.9418 -0.0090 9 6 7.1841 -1.7873 -0.0134 10 6 8.4331 -0.9036 -0.0185 11 6 9.6826 -1.7866 -0.0237 12 6 10.9128 -0.9161 -0.0294 13 1 10.8134 0.1593 -0.0289 14 6 12.1652 -1.4927 -0.0342 15 7 12.2863 -2.8023 -0.0343 16 14 13.6901 -0.4138 -0.0405 17 1 13.2856 1.0150 -0.0387 18 1 14.5034 -0.6991 1.1688 19 1 14.4937 -0.6996 -1.2562 20 6 2.2495 -1.0896 0.0005 21 6 1.7849 -2.5231 0.0006 22 6 0.7164 -2.9195 1.0215 23 6 2.1622 -3.3879 1.2051 24 1 -0.3634 -0.0965 -1.0231 25 1 -0.3633 -0.8378 0.5951 26 1 -0.3633 0.9343 0.4281 27 1 4.3918 1.4096 0.0003 28 1 6.0765 0.0241 -0.0086 29 1 7.1875 -2.4167 0.8765 30 1 7.1811 -2.4165 -0.9035 31 1 8.4295 -0.2746 -0.9087 32 1 8.4364 -0.2740 0.8713 33 1 9.6865 -2.4159 0.8662 34 1 9.6791 -2.4159 -0.9138 35 1 13.1674 -3.2079 -0.0380 36 1 1.7522 -3.0068 -0.9757 37 1 0.3492 -2.1432 1.6928 38 1 -0.0189 -3.6641 0.7169 39 1 2.3772 -4.4405 1.0213 40 1 2.7460 -2.9198 1.9976 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264025444.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:47 Heat of formation + Delta-G solvation = 51.047669 kcal Electronic energy + Delta-G solvation = -20683.161510 eV Core-core repulsion = 17500.049512 eV Total energy + Delta-G solvation = -3183.111997 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.69816 -38.85229 -37.28068 -35.23180 -33.62901 -33.14289 -31.19406 -30.29587 -27.73999 -26.33577 -23.98148 -23.00486 -22.78061 -21.91805 -20.56136 -20.31048 -19.28355 -17.59888 -16.44485 -16.37139 -15.66726 -15.34206 -15.14375 -15.00807 -14.69073 -14.43982 -14.17488 -13.71401 -13.38987 -12.92946 -12.87034 -12.25102 -12.24327 -11.77117 -11.72075 -11.62339 -11.41804 -10.89848 -10.81332 -10.67682 -10.53836 -10.46134 -9.81536 -9.75143 -9.61722 -9.30960 -9.06657 -8.85715 -8.50944 -8.34786 -5.99397 -4.02112 1.37535 2.08185 2.08388 3.31864 3.39290 3.42768 3.44443 3.61961 3.64203 4.08694 4.25077 4.46856 4.54882 4.68121 4.76900 4.81463 4.94043 5.03102 5.14476 5.26609 5.31894 5.36543 5.63617 5.68391 5.82764 5.86066 5.86776 5.95738 6.22169 6.26155 6.59121 6.60613 6.67111 6.93345 7.06988 7.35348 7.67428 7.80418 7.90091 8.00111 8.41191 8.60021 9.04996 9.62025 11.11988 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035172 B = 0.002914 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.906793 B = 9607.586980 C =10296.518321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.361 5.361 3 N -0.299 5.299 4 C 0.081 3.919 5 C -0.284 4.284 6 C 0.587 3.413 7 O -0.544 6.544 8 N -0.724 5.724 9 C 0.120 3.880 10 C -0.121 4.121 11 C 0.023 3.977 12 C -0.521 4.521 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.894 5.894 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.181 3.819 21 C -0.098 4.098 22 C -0.190 4.190 23 C -0.120 4.120 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.191 0.809 28 H 0.395 0.605 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.260 0.740 36 H 0.129 0.871 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.190 3.802 1.006 26.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.140 5.140 3 N -0.118 5.118 4 C -0.106 4.106 5 C -0.298 4.298 6 C 0.373 3.627 7 O -0.422 6.422 8 N -0.374 5.374 9 C -0.002 4.002 10 C -0.159 4.159 11 C -0.014 4.014 12 C -0.559 4.559 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C 0.048 3.952 21 C -0.118 4.118 22 C -0.227 4.227 23 C -0.158 4.158 24 H 0.097 0.903 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.208 0.792 28 H 0.229 0.771 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.147 0.853 37 H 0.111 0.889 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -27.082 3.821 1.001 27.369 hybrid contribution 1.562 0.500 -0.113 1.644 sum -25.521 4.321 0.888 25.899 Atomic orbital electron populations 1.22076 0.73920 1.05014 1.03863 1.48312 1.06927 1.03252 1.55468 1.77188 1.01987 1.07206 1.25469 1.24065 0.95352 0.93982 0.97194 1.20117 0.93084 0.93428 1.23219 1.17188 0.82168 0.87038 0.76275 1.90753 1.86755 1.13849 1.50834 1.45968 1.05760 1.10397 1.75306 1.21594 0.83019 0.93709 1.01892 1.21887 0.94338 0.98847 1.00853 1.19034 0.90036 0.94714 0.97635 1.21259 0.90940 0.93069 1.50624 0.92592 1.25032 0.99197 0.94945 0.95340 1.69978 1.23412 1.09169 1.50785 0.86536 0.83150 0.80734 0.77571 1.19750 1.21029 1.21025 1.20525 0.89833 0.89048 0.95750 1.20422 1.04855 0.88973 0.97500 1.23238 0.93483 1.03917 1.02061 1.22803 0.95105 1.00124 0.97783 0.90323 0.88925 0.88896 0.79195 0.77125 0.91838 0.91845 0.92748 0.92753 0.96279 0.96280 0.93016 0.85325 0.88914 0.87838 0.87622 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.56 11.16 59.85 0.67 1.23 16 2 N -0.36 -3.83 3.98 -63.34 -0.25 -4.08 16 3 N -0.30 -3.66 12.50 30.86 0.39 -3.28 16 4 C 0.08 0.95 11.50 -16.98 -0.20 0.76 16 5 C -0.28 -3.80 6.13 -105.07 -0.64 -4.45 16 6 C 0.59 9.22 7.81 -12.51 -0.10 9.12 16 7 O -0.54 -9.94 14.51 5.27 0.08 -9.86 16 8 N -0.72 -10.83 5.55 -61.38 -0.34 -11.17 16 9 C 0.12 2.15 5.67 -4.05 -0.02 2.13 16 10 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 11 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 12 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 16 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 20 C 0.18 2.15 6.44 -81.60 -0.53 1.62 16 21 C -0.10 -0.99 5.06 -91.77 -0.46 -1.45 16 22 C -0.19 -1.37 8.92 -26.69 -0.24 -1.60 16 23 C -0.12 -1.23 8.76 -26.69 -0.23 -1.47 16 24 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.09 0.40 5.24 -51.93 -0.27 0.13 16 26 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.19 1.63 7.50 -52.49 -0.39 1.24 16 28 H 0.40 4.83 7.43 -40.82 -0.30 4.53 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.13 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.09 0.61 6.81 -51.93 -0.35 0.25 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 337.69 15.07 5.09 5.09 Total: -1.00 -34.14 337.69 -7.71 -41.85 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -5.94 Total: 0.70 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -2.44 Total: -9.60 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.53 Total: -44.76 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.14 -7.71 -41.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264025444.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.897 kcal (2) G-P(sol) polarization free energy of solvation -34.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds