Wall clock time and date at job start Mon Mar 30 2020 01:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39930 * 125.75327 * 2 1 4 4 C 1.30443 * 108.89688 * 179.97438 * 3 2 1 5 5 C 1.41286 * 108.02288 * 0.02562 * 4 3 2 6 6 C 1.47436 * 126.41554 * 179.73887 * 5 4 3 7 7 O 1.21604 * 119.99904 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99941 * 0.02562 * 6 5 4 9 9 C 1.46495 * 120.00041 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47053 * 179.97438 * 9 8 6 11 11 C 1.53003 * 109.46916 * 180.02562 * 10 9 8 12 12 C 1.50708 * 109.47010 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99712 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99978 * 179.97438 * 12 11 10 15 15 N 1.31519 * 120.00025 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99917 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47236 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46969 * 120.00623 * 16 14 12 19 19 H 1.48496 * 109.47027 * 240.00525 * 16 14 12 20 20 C 1.34260 * 125.75288 * 179.97438 * 2 1 3 21 21 C 1.50696 * 126.29148 * 0.02562 * 20 2 1 22 22 C 1.53006 * 117.49987 * 311.19614 * 21 20 2 23 23 C 1.53001 * 117.49693 * 242.53483 * 21 20 2 24 24 H 1.09000 * 109.47293 * 95.38559 * 1 2 3 25 25 H 1.08996 * 109.46904 * 215.38685 * 1 2 3 26 26 H 1.09004 * 109.46844 * 335.38455 * 1 2 3 27 27 H 1.07999 * 125.99151 * 179.97438 * 4 3 2 28 28 H 0.96998 * 119.99944 * 0.02562 * 8 6 5 29 29 H 1.09003 * 109.47214 * 300.00527 * 9 8 6 30 30 H 1.09002 * 109.47126 * 60.00464 * 9 8 6 31 31 H 1.08996 * 109.47352 * 299.99976 * 10 9 8 32 32 H 1.09001 * 109.47239 * 60.00499 * 10 9 8 33 33 H 1.08995 * 109.47516 * 299.99872 * 11 10 9 34 34 H 1.09002 * 109.47243 * 60.00480 * 11 10 9 35 35 H 0.96996 * 119.99899 * 179.97438 * 15 14 12 36 36 H 1.09002 * 115.54886 * 96.86724 * 21 20 2 37 37 H 1.09001 * 117.49794 * 0.02562 * 22 21 20 38 38 H 1.08996 * 117.49424 * 145.02181 * 22 21 20 39 39 H 1.08997 * 117.49870 * 214.97502 * 23 21 20 40 40 H 1.08992 * 117.49946 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2826 1.1356 0.0000 4 6 3.5310 0.7573 0.0006 5 6 3.5598 -0.6552 0.0003 6 6 4.7638 -1.5061 -0.0046 7 8 4.6525 -2.7171 -0.0047 8 7 5.9878 -0.9418 -0.0090 9 6 7.1841 -1.7873 -0.0134 10 6 8.4331 -0.9036 -0.0185 11 6 9.6826 -1.7866 -0.0237 12 6 10.9128 -0.9161 -0.0294 13 1 10.8134 0.1593 -0.0289 14 6 12.1652 -1.4927 -0.0342 15 7 12.2863 -2.8023 -0.0343 16 14 13.6901 -0.4138 -0.0405 17 1 13.2856 1.0150 -0.0387 18 1 14.5034 -0.6991 1.1688 19 1 14.4937 -0.6996 -1.2562 20 6 2.2495 -1.0896 0.0005 21 6 1.7849 -2.5231 0.0006 22 6 0.7164 -2.9195 1.0215 23 6 2.1622 -3.3879 1.2051 24 1 -0.3634 -0.0965 -1.0231 25 1 -0.3633 -0.8378 0.5951 26 1 -0.3633 0.9343 0.4281 27 1 4.3918 1.4096 0.0003 28 1 6.0765 0.0241 -0.0086 29 1 7.1875 -2.4167 0.8765 30 1 7.1811 -2.4165 -0.9035 31 1 8.4295 -0.2746 -0.9087 32 1 8.4364 -0.2740 0.8713 33 1 9.6865 -2.4159 0.8662 34 1 9.6791 -2.4159 -0.9138 35 1 13.1674 -3.2079 -0.0380 36 1 1.7522 -3.0068 -0.9757 37 1 0.3492 -2.1432 1.6928 38 1 -0.0189 -3.6641 0.7169 39 1 2.3772 -4.4405 1.0213 40 1 2.7460 -2.9198 1.9976 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264025444.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:46 Heat of formation + Delta-G solvation = 28.481164 kcal Electronic energy + Delta-G solvation = -20684.140067 eV Core-core repulsion = 17500.049512 eV Total energy + Delta-G solvation = -3184.090555 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.57464 -40.11299 -38.02772 -36.81892 -35.13231 -34.31848 -32.92424 -31.26831 -28.98870 -27.67878 -25.29629 -24.27927 -23.54620 -22.92990 -22.25344 -21.28181 -20.33645 -18.67097 -18.41961 -17.27700 -16.76121 -16.62419 -16.39988 -16.36078 -15.89780 -15.45947 -15.12860 -15.00749 -14.61870 -14.17821 -13.73646 -13.65850 -13.50099 -13.35131 -13.04051 -12.75451 -12.52535 -12.38733 -12.32464 -12.26598 -11.64468 -11.54584 -11.51570 -11.22112 -11.18639 -10.74531 -10.54368 -10.41417 -10.07452 -9.58568 -8.18053 -6.29206 0.45401 1.13100 1.35028 1.42797 1.42821 1.56232 2.35079 2.45747 2.48870 2.74896 3.15778 3.35028 3.49969 3.87120 3.92543 4.01701 4.19599 4.26185 4.26756 4.27308 4.39222 4.49482 4.60206 4.62388 4.75191 4.79072 4.98426 4.99410 5.07598 5.08739 5.20357 5.20444 5.36848 5.50794 5.59231 5.74108 5.82901 5.86665 6.24696 6.47131 6.72960 6.88812 7.38682 7.40507 8.94361 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035172 B = 0.002914 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.906793 B = 9607.586980 C =10296.518321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.355 5.355 3 N -0.317 5.317 4 C 0.084 3.916 5 C -0.313 4.313 6 C 0.585 3.415 7 O -0.576 6.576 8 N -0.715 5.715 9 C 0.136 3.864 10 C -0.102 4.102 11 C 0.024 3.976 12 C -0.539 4.539 13 H 0.066 0.934 14 C -0.004 4.004 15 N -0.936 5.936 16 Si 0.967 3.033 17 H -0.258 1.258 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.182 3.818 21 C -0.113 4.113 22 C -0.150 4.150 23 C -0.143 4.143 24 H 0.094 0.906 25 H 0.112 0.888 26 H 0.104 0.896 27 H 0.215 0.785 28 H 0.411 0.589 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.067 0.933 33 H -0.008 1.008 34 H -0.008 1.008 35 H 0.263 0.737 36 H 0.130 0.870 37 H 0.105 0.895 38 H 0.131 0.869 39 H 0.102 0.898 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.819 5.703 1.035 28.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.133 5.133 3 N -0.137 5.137 4 C -0.103 4.103 5 C -0.328 4.328 6 C 0.374 3.626 7 O -0.457 6.457 8 N -0.367 5.367 9 C 0.012 3.988 10 C -0.140 4.140 11 C -0.014 4.014 12 C -0.577 4.577 13 H 0.084 0.916 14 C -0.201 4.201 15 N -0.576 5.576 16 Si 0.791 3.209 17 H -0.182 1.182 18 H -0.206 1.206 19 H -0.206 1.206 20 C 0.048 3.952 21 C -0.132 4.132 22 C -0.186 4.186 23 C -0.181 4.181 24 H 0.113 0.887 25 H 0.131 0.869 26 H 0.122 0.878 27 H 0.232 0.768 28 H 0.247 0.753 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.011 0.989 34 H 0.011 0.989 35 H 0.072 0.928 36 H 0.147 0.853 37 H 0.123 0.877 38 H 0.149 0.851 39 H 0.120 0.880 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -28.753 5.777 1.031 29.345 hybrid contribution 1.974 -0.132 -0.120 1.982 sum -26.778 5.645 0.911 27.382 Atomic orbital electron populations 1.22492 0.71333 1.06564 1.05492 1.48661 1.08316 1.02375 1.53982 1.77149 1.02294 1.08161 1.26093 1.24438 0.96102 0.93481 0.96247 1.20017 0.92735 0.94072 1.25961 1.17538 0.82780 0.86927 0.75343 1.90731 1.87221 1.15378 1.52362 1.45724 1.04735 1.10912 1.75284 1.21176 0.83648 0.93412 1.00597 1.21599 0.92295 0.98044 1.02062 1.18945 0.92564 0.94811 0.95068 1.21724 0.91956 0.93842 1.50197 0.91568 1.26022 1.02957 0.96328 0.94842 1.70120 1.24391 1.11232 1.51862 0.85370 0.78599 0.79284 0.77609 1.18212 1.20582 1.20582 1.20778 0.89746 0.90111 0.94544 1.20491 1.06966 0.87979 0.97804 1.23346 0.92036 1.03679 0.99586 1.22729 0.97892 0.99829 0.97616 0.88715 0.86943 0.87750 0.76808 0.75301 0.93236 0.93287 0.91440 0.91418 0.98925 0.98947 0.92833 0.85257 0.87707 0.85112 0.88000 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 11.16 127.77 1.43 2.16 16 2 N -0.36 -6.85 3.98 -354.31 -1.41 -8.26 16 3 N -0.32 -7.23 12.50 -56.28 -0.70 -7.93 16 4 C 0.08 1.86 11.50 85.65 0.99 2.84 16 5 C -0.31 -8.23 6.13 -20.15 -0.12 -8.35 16 6 C 0.59 18.59 7.81 86.67 0.68 19.27 16 7 O -0.58 -21.77 14.51 -4.04 -0.06 -21.83 16 8 N -0.72 -21.23 5.55 -466.37 -2.59 -23.82 16 9 C 0.14 4.94 5.67 86.38 0.49 5.43 16 10 C -0.10 -4.01 5.27 30.59 0.16 -3.85 16 11 C 0.02 1.25 4.97 29.85 0.15 1.40 16 12 C -0.54 -30.37 9.11 25.60 0.23 -30.14 16 13 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 14 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 15 N -0.94 -57.58 13.29 21.45 0.28 -57.29 16 16 Si 0.97 44.16 29.54 68.60 2.03 46.19 16 17 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 C 0.18 4.15 6.44 42.14 0.27 4.42 16 21 C -0.11 -2.16 5.06 -11.54 -0.06 -2.21 16 22 C -0.15 -1.77 8.92 30.62 0.27 -1.50 16 23 C -0.14 -2.90 8.76 30.62 0.27 -2.64 16 24 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.11 0.57 5.24 -2.39 -0.01 0.56 16 26 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.22 3.26 7.50 -2.91 -0.02 3.24 16 28 H 0.41 9.52 7.43 -92.71 -0.69 8.83 16 29 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 33 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 34 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 35 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 36 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.10 1.02 6.81 -2.39 -0.02 1.00 16 38 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -75.21 337.69 3.12 -72.08 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.36 Total: 13.79 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 5.21 Total: -12.94 kcal Atomic # 7 Polarization: -92.88 SS G_CDS: -4.42 Total: -97.30 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.06 Total: -21.83 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -75.21 3.12 -72.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264025444.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.565 kcal (2) G-P(sol) polarization free energy of solvation -75.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds