Wall clock time and date at job start Mon Mar 30 2020 01:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35990 * 116.99783 * 2 1 4 4 C 1.38710 * 119.98173 * 180.02562 * 3 2 1 5 5 C 1.38097 * 120.01519 * 179.97438 * 4 3 2 6 6 C 1.38847 * 119.98429 * 359.97438 * 5 4 3 7 7 N 1.40097 * 120.02093 * 179.97438 * 6 5 4 8 8 C 1.37610 * 120.00416 * 143.37652 * 7 6 5 9 9 N 1.37517 * 120.00421 * 183.96029 * 8 7 6 10 10 N 1.30349 * 119.99572 * 3.96018 * 8 7 6 11 11 C 1.46510 * 119.99906 * 174.72365 * 10 8 7 12 12 C 1.53002 * 109.47046 * 115.80693 * 11 10 8 13 13 C 1.53002 * 109.47172 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47091 * 180.02562 * 13 12 11 15 15 H 1.07994 * 119.99984 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99543 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99561 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00474 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47529 * 89.99745 * 18 16 14 20 20 H 1.48504 * 109.47052 * 210.00235 * 18 16 14 21 21 H 1.48506 * 109.46806 * 329.99913 * 18 16 14 22 22 C 1.38854 * 119.96778 * 0.25641 * 6 5 4 23 23 C 1.38096 * 119.98228 * 359.51192 * 22 6 5 24 24 H 1.09003 * 109.47678 * 59.99764 * 1 2 3 25 25 H 1.09002 * 109.47027 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47029 * 299.99734 * 1 2 3 27 27 H 1.07998 * 119.99614 * 359.97438 * 4 3 2 28 28 H 1.07997 * 120.01052 * 179.97438 * 5 4 3 29 29 H 0.96998 * 119.99985 * 323.38618 * 7 6 5 30 30 H 0.96998 * 119.99414 * 337.94849 * 9 8 7 31 31 H 0.96995 * 119.99930 * 157.68418 * 9 8 7 32 32 H 1.08997 * 109.47498 * 235.80571 * 11 10 8 33 33 H 1.09004 * 109.46883 * 355.81055 * 11 10 8 34 34 H 1.09002 * 109.47315 * 300.00114 * 12 11 10 35 35 H 1.08997 * 109.46990 * 59.99997 * 12 11 10 36 36 H 1.09002 * 109.46857 * 300.00104 * 13 12 11 37 37 H 1.08998 * 109.47143 * 59.99475 * 13 12 11 38 38 H 0.96999 * 119.99680 * 179.97438 * 17 16 14 39 39 H 1.08002 * 120.00685 * 179.74877 * 22 6 5 40 40 H 1.08001 * 119.99716 * 180.23259 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 3.4316 1.2839 -0.0005 5 6 4.0592 2.5140 -0.0011 6 6 3.3033 3.6787 -0.0016 7 7 3.9392 4.9270 -0.0016 8 6 3.3996 5.9742 -0.7129 9 7 4.0654 7.1756 -0.7798 10 7 2.2573 5.8272 -1.3234 11 6 1.6266 6.9733 -1.9832 12 6 1.5532 6.7174 -3.4899 13 6 0.8951 7.9145 -4.1791 14 6 0.8222 7.6621 -5.6630 15 1 1.2071 6.7404 -6.0735 16 6 0.2641 8.6081 -6.4964 17 7 0.2009 8.3881 -7.7916 18 14 -0.4011 10.2027 -5.7864 19 1 0.6785 11.2220 -5.7619 20 1 -1.5228 10.6898 -6.6289 21 1 -0.8878 9.9639 -4.4039 22 6 1.9167 3.6056 0.0038 23 6 1.2904 2.3748 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 4.0194 0.3780 -0.0005 28 1 5.1377 2.5701 -0.0011 29 1 4.7599 5.0532 0.4997 30 1 4.7194 7.4059 -0.1015 31 1 3.8838 7.7908 -1.5073 32 1 0.6200 7.1110 -1.5886 33 1 2.2165 7.8705 -1.7954 34 1 2.5598 6.5796 -3.8846 35 1 0.9634 5.8202 -3.6777 36 1 -0.1115 8.0526 -3.7844 37 1 1.4852 8.8114 -3.9911 38 1 -0.1921 9.0534 -8.3779 39 1 1.3281 4.5112 0.0075 40 1 0.2119 2.3177 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264243337.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:15 Heat of formation + Delta-G solvation = 23.760581 kcal Electronic energy + Delta-G solvation = -20585.338614 eV Core-core repulsion = 17401.043360 eV Total energy + Delta-G solvation = -3184.295254 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.24013 -38.90987 -37.12083 -34.77264 -33.38745 -32.24772 -31.13140 -30.50523 -28.91555 -27.06627 -26.72264 -23.39637 -22.40060 -22.01335 -20.11924 -19.52043 -18.15565 -17.83498 -17.59659 -16.58510 -16.03055 -15.89121 -15.73736 -14.70615 -14.46269 -14.14888 -14.06586 -13.84265 -13.43693 -12.97404 -12.75107 -12.67188 -12.53968 -12.05347 -11.90360 -11.76683 -11.28112 -10.93716 -10.88018 -10.72697 -10.01101 -9.75927 -9.68691 -9.60723 -9.13193 -9.03594 -8.69921 -8.49300 -8.09508 -7.33788 -5.99415 -3.96707 1.36484 1.50153 2.79348 3.01918 3.27683 3.32348 3.39824 3.44286 3.87736 4.18454 4.48887 4.83393 4.90762 5.04492 5.08221 5.11047 5.29930 5.34319 5.38658 5.50215 5.63176 5.79905 6.03880 6.05993 6.13254 6.28890 6.40208 6.48035 6.63861 6.64472 6.80557 6.93858 6.99163 7.01899 7.23054 7.42160 7.45415 7.52584 7.85367 7.96406 8.60494 8.70977 9.06992 9.63250 11.14349 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018801 B = 0.003497 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.939158 B = 8005.509701 C = 8969.668807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.323 6.323 3 C 0.102 3.898 4 C -0.137 4.137 5 C -0.117 4.117 6 C 0.144 3.856 7 N -0.668 5.668 8 C 0.600 3.400 9 N -0.898 5.898 10 N -0.631 5.631 11 C 0.070 3.930 12 C -0.095 4.095 13 C -0.013 4.013 14 C -0.517 4.517 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.881 3.119 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.265 1.265 22 C -0.066 4.066 23 C -0.189 4.189 24 H 0.057 0.943 25 H 0.096 0.904 26 H 0.053 0.947 27 H 0.129 0.871 28 H 0.126 0.874 29 H 0.407 0.593 30 H 0.388 0.612 31 H 0.415 0.585 32 H 0.067 0.933 33 H 0.027 0.973 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.015 0.985 37 H 0.007 0.993 38 H 0.262 0.738 39 H 0.150 0.850 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.218 -10.950 21.825 25.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.056 3.944 4 C -0.156 4.156 5 C -0.138 4.138 6 C 0.048 3.952 7 N -0.303 5.303 8 C 0.234 3.766 9 N -0.457 5.457 10 N -0.369 5.369 11 C -0.060 4.060 12 C -0.133 4.133 13 C -0.051 4.051 14 C -0.555 4.555 15 H 0.089 0.911 16 C -0.137 4.137 17 N -0.545 5.545 18 Si 0.709 3.291 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.190 1.190 22 C -0.087 4.087 23 C -0.208 4.208 24 H 0.075 0.925 25 H 0.114 0.886 26 H 0.072 0.928 27 H 0.147 0.853 28 H 0.144 0.856 29 H 0.243 0.757 30 H 0.216 0.784 31 H 0.249 0.751 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.033 0.967 37 H 0.025 0.975 38 H 0.072 0.928 39 H 0.167 0.833 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.399 -11.743 21.359 25.200 hybrid contribution 0.411 2.252 0.218 2.299 sum 6.811 -9.491 21.577 24.536 Atomic orbital electron populations 1.23020 0.78618 1.03580 1.01503 1.86037 1.21197 1.27156 1.89253 1.18984 0.92301 0.84116 0.98970 1.20058 0.91281 0.97748 1.06514 1.20625 0.99389 0.90560 1.03217 1.17337 0.91644 0.83404 1.02771 1.41222 1.28519 1.07296 1.53254 1.18844 0.88086 0.80073 0.89552 1.42925 1.49337 1.19776 1.33702 1.72578 1.08825 1.31098 1.24359 1.21888 0.98111 0.90113 0.95928 1.21467 1.00470 1.00142 0.91225 1.19570 0.95459 0.93517 0.96554 1.21175 1.39257 1.05093 0.89964 0.91128 1.25055 0.95542 0.98356 0.94716 1.69929 1.45941 1.35521 1.03113 0.86757 0.78867 0.83970 0.79550 1.20437 1.21433 1.19003 1.21180 0.93388 0.98152 0.95931 1.21162 1.00022 0.91868 1.07764 0.92466 0.88570 0.92833 0.85349 0.85577 0.75695 0.78447 0.75120 0.91429 0.95436 0.93617 0.92251 0.96657 0.97476 0.92834 0.83295 0.85501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.77 10.50 -19.71 -0.21 -3.98 16 3 C 0.10 1.26 6.69 -39.23 -0.26 1.00 16 4 C -0.14 -1.55 9.98 -39.46 -0.39 -1.94 16 5 C -0.12 -1.25 9.96 -39.41 -0.39 -1.65 16 6 C 0.14 1.76 6.28 -83.63 -0.52 1.24 16 7 N -0.67 -7.14 5.45 -11.11 -0.06 -7.20 16 8 C 0.60 7.87 8.50 -319.85 -2.72 5.15 16 9 N -0.90 -9.11 8.53 30.17 0.26 -8.86 16 10 N -0.63 -10.33 7.19 -61.72 -0.44 -10.77 16 11 C 0.07 1.24 6.20 -4.04 -0.03 1.21 16 12 C -0.09 -2.04 5.48 -26.73 -0.15 -2.19 16 13 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 14 C -0.52 -15.35 9.66 -34.44 -0.33 -15.68 16 15 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 16 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.91 -28.69 13.96 55.43 0.77 -27.91 16 18 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 22 C -0.07 -0.89 8.61 -39.41 -0.34 -1.23 16 23 C -0.19 -2.36 9.03 -39.46 -0.36 -2.72 16 24 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 25 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 27 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 28 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.41 2.94 8.94 -40.82 -0.37 2.57 16 30 H 0.39 2.62 8.95 -40.82 -0.37 2.25 16 31 H 0.41 4.63 6.83 -40.82 -0.28 4.35 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.03 0.44 5.75 -51.93 -0.30 0.14 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 37 H 0.01 0.17 7.57 -51.93 -0.39 -0.23 16 38 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 39 H 0.15 2.21 6.23 -52.49 -0.33 1.88 16 40 H 0.13 1.39 6.29 -52.49 -0.33 1.06 16 LS Contribution 331.62 15.07 5.00 5.00 Total: -1.00 -34.71 331.62 -9.71 -44.42 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.65 Total: 5.98 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -4.71 Total: -14.20 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.53 Total: -54.74 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: -0.21 Total: -3.98 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.71 -9.71 -44.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264243337.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.185 kcal (2) G-P(sol) polarization free energy of solvation -34.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds