Wall clock time and date at job start Mon Mar 30 2020 01:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35990 * 116.99783 * 2 1 4 4 C 1.38710 * 119.98173 * 180.02562 * 3 2 1 5 5 C 1.38097 * 120.01519 * 179.97438 * 4 3 2 6 6 C 1.38847 * 119.98429 * 359.97438 * 5 4 3 7 7 N 1.40097 * 120.02093 * 179.97438 * 6 5 4 8 8 C 1.37610 * 120.00416 * 143.37652 * 7 6 5 9 9 N 1.37517 * 120.00421 * 183.96029 * 8 7 6 10 10 N 1.30349 * 119.99572 * 3.96018 * 8 7 6 11 11 C 1.46510 * 119.99906 * 174.72365 * 10 8 7 12 12 C 1.53002 * 109.47046 * 115.80693 * 11 10 8 13 13 C 1.53002 * 109.47172 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47091 * 180.02562 * 13 12 11 15 15 H 1.07994 * 119.99984 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99543 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99561 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00474 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47529 * 89.99745 * 18 16 14 20 20 H 1.48504 * 109.47052 * 210.00235 * 18 16 14 21 21 H 1.48506 * 109.46806 * 329.99913 * 18 16 14 22 22 C 1.38854 * 119.96778 * 0.25641 * 6 5 4 23 23 C 1.38096 * 119.98228 * 359.51192 * 22 6 5 24 24 H 1.09003 * 109.47678 * 59.99764 * 1 2 3 25 25 H 1.09002 * 109.47027 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47029 * 299.99734 * 1 2 3 27 27 H 1.07998 * 119.99614 * 359.97438 * 4 3 2 28 28 H 1.07997 * 120.01052 * 179.97438 * 5 4 3 29 29 H 0.96998 * 119.99985 * 323.38618 * 7 6 5 30 30 H 0.96998 * 119.99414 * 337.94849 * 9 8 7 31 31 H 0.96995 * 119.99930 * 157.68418 * 9 8 7 32 32 H 1.08997 * 109.47498 * 235.80571 * 11 10 8 33 33 H 1.09004 * 109.46883 * 355.81055 * 11 10 8 34 34 H 1.09002 * 109.47315 * 300.00114 * 12 11 10 35 35 H 1.08997 * 109.46990 * 59.99997 * 12 11 10 36 36 H 1.09002 * 109.46857 * 300.00104 * 13 12 11 37 37 H 1.08998 * 109.47143 * 59.99475 * 13 12 11 38 38 H 0.96999 * 119.99680 * 179.97438 * 17 16 14 39 39 H 1.08002 * 120.00685 * 179.74877 * 22 6 5 40 40 H 1.08001 * 119.99716 * 180.23259 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 3.4316 1.2839 -0.0005 5 6 4.0592 2.5140 -0.0011 6 6 3.3033 3.6787 -0.0016 7 7 3.9392 4.9270 -0.0016 8 6 3.3996 5.9742 -0.7129 9 7 4.0654 7.1756 -0.7798 10 7 2.2573 5.8272 -1.3234 11 6 1.6266 6.9733 -1.9832 12 6 1.5532 6.7174 -3.4899 13 6 0.8951 7.9145 -4.1791 14 6 0.8222 7.6621 -5.6630 15 1 1.2071 6.7404 -6.0735 16 6 0.2641 8.6081 -6.4964 17 7 0.2009 8.3881 -7.7916 18 14 -0.4011 10.2027 -5.7864 19 1 0.6785 11.2220 -5.7619 20 1 -1.5228 10.6898 -6.6289 21 1 -0.8878 9.9639 -4.4039 22 6 1.9167 3.6056 0.0038 23 6 1.2904 2.3748 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 4.0194 0.3780 -0.0005 28 1 5.1377 2.5701 -0.0011 29 1 4.7599 5.0532 0.4997 30 1 4.7194 7.4059 -0.1015 31 1 3.8838 7.7908 -1.5073 32 1 0.6200 7.1110 -1.5886 33 1 2.2165 7.8705 -1.7954 34 1 2.5598 6.5796 -3.8846 35 1 0.9634 5.8202 -3.6777 36 1 -0.1115 8.0526 -3.7844 37 1 1.4852 8.8114 -3.9911 38 1 -0.1921 9.0534 -8.3779 39 1 1.3281 4.5112 0.0075 40 1 0.2119 2.3177 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264243337.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:15 Heat of formation + Delta-G solvation = 1.311011 kcal Electronic energy + Delta-G solvation = -20586.312101 eV Core-core repulsion = 17401.043360 eV Total energy + Delta-G solvation = -3185.268741 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.13054 -39.85770 -38.09676 -36.33383 -34.84246 -33.83339 -32.31707 -31.77381 -29.79908 -28.54690 -27.75809 -24.92859 -23.50498 -22.98574 -21.91585 -20.65120 -19.12662 -18.88492 -18.63039 -18.54026 -16.95558 -16.76627 -16.53956 -16.37319 -15.81014 -15.61568 -15.22422 -14.82724 -14.73288 -14.43161 -14.11190 -13.76948 -13.64147 -13.40605 -13.37280 -12.79027 -12.68172 -12.58898 -12.08404 -11.87465 -11.72471 -11.67167 -11.48712 -11.34281 -10.77012 -10.57312 -10.04868 -9.73784 -9.14568 -8.33404 -8.29448 -6.34967 0.46650 0.56230 1.35187 1.38756 1.51396 1.81629 2.02998 2.36652 2.50245 2.96488 3.04899 3.29649 3.93066 4.03611 4.05875 4.30444 4.35644 4.42723 4.47711 4.54367 4.65160 4.72705 4.75688 4.79582 4.88394 5.04805 5.08875 5.20254 5.23641 5.50430 5.54344 5.55520 5.59857 5.66113 5.76402 6.04866 6.12211 6.26844 6.33823 6.56740 6.72904 7.14532 7.29475 7.68012 8.87515 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018801 B = 0.003497 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.939158 B = 8005.509701 C = 8969.668807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.336 6.336 3 C 0.090 3.910 4 C -0.143 4.143 5 C -0.108 4.108 6 C 0.130 3.870 7 N -0.653 5.653 8 C 0.608 3.392 9 N -0.884 5.884 10 N -0.671 5.671 11 C 0.085 3.915 12 C -0.082 4.082 13 C -0.007 4.007 14 C -0.536 4.536 15 H 0.021 0.979 16 C 0.000 4.000 17 N -0.954 5.954 18 Si 0.959 3.041 19 H -0.262 1.262 20 H -0.284 1.284 21 H -0.245 1.245 22 C -0.084 4.084 23 C -0.200 4.200 24 H 0.052 0.948 25 H 0.119 0.881 26 H 0.063 0.937 27 H 0.147 0.853 28 H 0.157 0.843 29 H 0.426 0.574 30 H 0.408 0.592 31 H 0.413 0.587 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.032 0.968 35 H 0.032 0.968 36 H 0.020 0.980 37 H 0.025 0.975 38 H 0.267 0.733 39 H 0.133 0.867 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.198 -9.917 24.179 27.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.250 6.250 3 C 0.045 3.955 4 C -0.162 4.162 5 C -0.129 4.129 6 C 0.034 3.966 7 N -0.289 5.289 8 C 0.242 3.758 9 N -0.444 5.444 10 N -0.412 5.412 11 C -0.046 4.046 12 C -0.121 4.121 13 C -0.045 4.045 14 C -0.574 4.574 15 H 0.040 0.960 16 C -0.196 4.196 17 N -0.595 5.595 18 Si 0.781 3.219 19 H -0.186 1.186 20 H -0.209 1.209 21 H -0.168 1.168 22 C -0.105 4.105 23 C -0.219 4.219 24 H 0.071 0.929 25 H 0.138 0.862 26 H 0.081 0.919 27 H 0.164 0.836 28 H 0.174 0.826 29 H 0.265 0.735 30 H 0.238 0.762 31 H 0.247 0.753 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.038 0.962 37 H 0.043 0.957 38 H 0.075 0.925 39 H 0.151 0.849 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.445 -10.720 23.771 27.118 hybrid contribution 0.177 1.772 -0.538 1.860 sum 7.622 -8.948 23.233 26.037 Atomic orbital electron populations 1.23252 0.77108 1.05256 1.01762 1.86018 1.22858 1.26901 1.89195 1.19214 0.92997 0.84258 0.99062 1.20408 0.91160 0.98806 1.05861 1.20911 1.00790 0.89625 1.01590 1.17497 0.91466 0.84402 1.03221 1.41142 1.28761 1.06267 1.52767 1.18991 0.87431 0.81161 0.88186 1.42804 1.49087 1.18543 1.33981 1.72580 1.11031 1.30582 1.27033 1.21563 0.98772 0.91625 0.92667 1.21277 0.98658 0.97733 0.94435 1.19493 0.96263 0.95404 0.93336 1.21514 1.39349 1.03574 0.93001 0.96010 1.26133 0.95638 1.02926 0.94925 1.70096 1.47101 1.37347 1.04977 0.85530 0.78509 0.78303 0.79511 1.18641 1.20936 1.16839 1.21165 0.94223 0.97850 0.97301 1.21273 1.00609 0.91904 1.08131 0.92925 0.86235 0.91865 0.83562 0.82586 0.73476 0.76169 0.75335 0.91915 0.93463 0.94936 0.94881 0.96202 0.95705 0.92450 0.84918 0.84871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.34 -7.63 10.50 -93.44 -0.98 -8.61 16 3 C 0.09 2.19 6.69 22.50 0.15 2.34 16 4 C -0.14 -3.03 9.98 22.35 0.22 -2.81 16 5 C -0.11 -2.10 9.96 22.38 0.22 -1.87 16 6 C 0.13 3.01 6.28 38.11 0.24 3.25 16 7 N -0.65 -12.55 5.45 -189.07 -1.03 -13.58 16 8 C 0.61 14.87 8.50 260.45 2.21 17.08 16 9 N -0.88 -15.59 8.53 -58.46 -0.50 -16.09 16 10 N -0.67 -21.63 7.19 -349.19 -2.51 -24.13 16 11 C 0.08 2.93 6.20 86.38 0.54 3.47 16 12 C -0.08 -3.62 5.48 30.60 0.17 -3.45 16 13 C -0.01 -0.34 4.04 29.85 0.12 -0.22 16 14 C -0.54 -32.80 9.66 25.60 0.25 -32.55 16 15 H 0.02 1.48 7.99 -2.91 -0.02 1.46 16 16 C 0.00 0.00 5.47 84.65 0.46 0.46 16 17 N -0.95 -61.97 13.96 21.45 0.30 -61.67 16 18 Si 0.96 45.15 27.47 68.60 1.88 47.03 16 19 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.24 -10.67 6.54 99.48 0.65 -10.02 16 22 C -0.08 -2.28 8.61 22.38 0.19 -2.09 16 23 C -0.20 -5.05 9.03 22.35 0.20 -4.85 16 24 H 0.05 0.88 7.66 -2.39 -0.02 0.86 16 25 H 0.12 1.28 8.14 -2.39 -0.02 1.27 16 26 H 0.06 0.87 7.66 -2.38 -0.02 0.85 16 27 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 28 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 29 H 0.43 4.82 8.94 -92.71 -0.83 3.99 16 30 H 0.41 4.14 8.95 -92.71 -0.83 3.31 16 31 H 0.41 8.14 6.83 -92.71 -0.63 7.51 16 32 H 0.06 2.19 8.14 -2.39 -0.02 2.18 16 33 H 0.05 1.41 5.75 -2.38 -0.01 1.40 16 34 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.02 0.95 7.20 -2.39 -0.02 0.94 16 37 H 0.02 1.13 7.57 -2.39 -0.02 1.12 16 38 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 39 H 0.13 4.03 6.23 -2.91 -0.02 4.01 16 40 H 0.13 3.00 6.29 -2.91 -0.02 2.98 16 Total: -1.00 -77.55 331.62 1.99 -75.56 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -1.27 Total: 21.30 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: 6.09 Total: -19.81 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -3.74 Total: -115.47 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.98 Total: -8.61 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.03 kcal Total: -77.55 1.99 -75.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264243337.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.870 kcal (2) G-P(sol) polarization free energy of solvation -77.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds