Wall clock time and date at job start Mon Mar 30 2020 01:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46503 * 120.00360 * 2 1 4 4 C 1.34779 * 120.00050 * 180.02562 * 2 1 3 5 5 O 1.21594 * 119.99961 * 10.90096 * 4 2 1 6 6 C 1.47540 * 120.00123 * 190.89596 * 4 2 1 7 7 C 1.40351 * 120.47124 * 153.85466 * 6 4 2 8 8 C 1.36861 * 118.48797 * 180.02562 * 7 6 4 9 9 C 1.39390 * 119.38221 * 0.02562 * 8 7 6 10 10 N 1.38457 * 119.54229 * 179.97438 * 9 8 7 11 11 C 1.46498 * 119.99771 * 0.02562 * 10 9 8 12 12 C 1.53006 * 109.47352 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47140 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.46917 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99817 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00223 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99269 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00380 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47181 * 89.99478 * 18 16 14 20 20 H 1.48501 * 109.47357 * 209.99875 * 18 16 14 21 21 H 1.48498 * 109.47023 * 329.99918 * 18 16 14 22 22 N 1.32607 * 120.92022 * 359.97438 * 9 8 7 23 23 C 1.31676 * 121.63732 * 359.70284 * 22 9 8 24 24 H 1.08996 * 109.47742 * 89.99308 * 1 2 3 25 25 H 1.09005 * 109.47020 * 329.99449 * 1 2 3 26 26 H 1.09007 * 109.47234 * 209.99752 * 1 2 3 27 27 H 1.09005 * 109.46713 * 6.15946 * 3 2 1 28 28 H 1.08996 * 109.47212 * 126.15850 * 3 2 1 29 29 H 1.09000 * 109.47322 * 246.16304 * 3 2 1 30 30 H 1.08000 * 120.75608 * 359.97438 * 7 6 4 31 31 H 1.08004 * 120.30558 * 179.97438 * 8 7 6 32 32 H 0.96995 * 120.00015 * 179.97438 * 10 9 8 33 33 H 1.08999 * 109.47107 * 300.00309 * 11 10 9 34 34 H 1.09009 * 109.47376 * 59.99761 * 11 10 9 35 35 H 1.08996 * 109.46823 * 300.00037 * 12 11 10 36 36 H 1.09000 * 109.46306 * 59.99828 * 12 11 10 37 37 H 1.08991 * 109.47347 * 300.00283 * 13 12 11 38 38 H 1.09003 * 109.46866 * 60.00577 * 13 12 11 39 39 H 0.97005 * 119.99042 * 180.02562 * 17 16 14 40 40 H 1.08001 * 119.74293 * 180.28791 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5473 -2.2107 -0.2001 6 6 3.5943 -1.1789 0.2410 7 6 4.2176 -2.3160 0.7778 8 6 5.5699 -2.2823 0.9857 9 6 6.2831 -1.1294 0.6617 10 7 7.6512 -1.0915 0.8713 11 6 8.3393 -2.2582 1.4293 12 6 9.8337 -1.9558 1.5578 13 6 10.5522 -3.1741 2.1413 14 6 12.0240 -2.8761 2.2684 15 1 12.4084 -1.9140 1.9632 16 6 12.8799 -3.8318 2.7734 17 7 12.4116 -5.0034 3.1446 18 14 14.7040 -3.4621 2.9316 19 1 14.9752 -2.8708 4.2666 20 1 15.4789 -4.7198 2.7806 21 1 15.1080 -2.5016 1.8736 22 7 5.6696 -0.0683 0.1557 23 6 4.3716 -0.0612 -0.0658 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 0.8900 0.5139 26 1 -0.3634 -0.8901 0.5138 27 1 1.4943 2.0943 0.1103 28 1 2.9043 1.2802 0.8297 29 1 2.7389 1.3757 -0.9400 30 1 3.6431 -3.1973 1.0220 31 1 6.0795 -3.1408 1.3978 32 1 8.1541 -0.2927 0.6478 33 1 7.9285 -2.4863 2.4128 34 1 8.1976 -3.1139 0.7690 35 1 10.2442 -1.7281 0.5741 36 1 9.9757 -1.1001 2.2179 37 1 10.1417 -3.4015 3.1249 38 1 10.4102 -4.0301 1.4815 39 1 13.0138 -5.6757 3.5002 40 1 3.9041 0.8182 -0.4835 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264822807.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:02 Heat of formation + Delta-G solvation = 17.154040 kcal Electronic energy + Delta-G solvation = -20263.006136 eV Core-core repulsion = 17078.424401 eV Total energy + Delta-G solvation = -3184.581736 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.86160 -39.30986 -36.46565 -35.91458 -33.74441 -32.57091 -31.77888 -30.25919 -28.14080 -27.11019 -26.12649 -24.00772 -23.22624 -22.20172 -20.46766 -20.12334 -17.64982 -17.47924 -17.00175 -16.39938 -16.16999 -15.66584 -15.13798 -14.80441 -14.52590 -14.30048 -14.18221 -13.93485 -13.28918 -13.17121 -13.04589 -12.90826 -12.53559 -12.31591 -12.09160 -11.94254 -11.67481 -10.98658 -10.82988 -10.62759 -10.35418 -10.17590 -9.96536 -9.73384 -9.57830 -9.44978 -9.20849 -8.99520 -8.43356 -7.71651 -6.08280 -4.11325 0.89992 1.32531 2.66861 2.77821 3.19435 3.27348 3.34075 3.37156 3.87532 4.35673 4.39554 4.41079 4.66024 4.79451 4.93789 4.95822 5.04521 5.16919 5.21936 5.24524 5.27980 5.47124 5.48789 5.56183 5.65656 5.91015 5.93711 6.03051 6.20222 6.33494 6.45042 6.58152 6.85980 7.01930 7.04206 7.54344 7.57997 7.65734 7.89680 7.95520 8.09152 8.31018 8.94960 9.53413 11.02993 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.055448 B = 0.002452 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.860091 B =11416.460741 C =11828.691053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.625 5.625 3 C 0.069 3.931 4 C 0.575 3.425 5 O -0.542 6.542 6 C -0.273 4.273 7 C 0.025 3.975 8 C -0.247 4.247 9 C 0.428 3.572 10 N -0.706 5.706 11 C 0.117 3.883 12 C -0.121 4.121 13 C 0.025 3.975 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 N -0.555 5.555 23 C 0.157 3.843 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.406 0.594 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.262 0.738 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.253 12.366 -5.473 25.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.359 5.359 3 C -0.074 4.074 4 C 0.365 3.635 5 O -0.419 6.419 6 C -0.282 4.282 7 C -0.001 4.001 8 C -0.272 4.272 9 C 0.189 3.811 10 N -0.333 5.333 11 C -0.006 4.006 12 C -0.159 4.159 13 C -0.013 4.013 14 C -0.562 4.562 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.722 3.278 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 N -0.273 5.273 23 C -0.003 4.003 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.156 0.844 31 H 0.158 0.842 32 H 0.242 0.758 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -20.872 12.161 -5.591 24.795 hybrid contribution 0.793 -0.260 0.270 0.878 sum -20.079 11.901 -5.320 23.939 Atomic orbital electron populations 1.21653 0.78819 1.02972 1.01881 1.47567 1.07055 1.06159 1.75122 1.22399 0.97857 0.85477 1.01651 1.18085 0.86745 0.82880 0.75752 1.90763 1.70230 1.31863 1.49068 1.20334 0.93921 0.98382 1.15521 1.21039 0.93526 0.96112 0.89450 1.21203 0.94832 0.99925 1.11213 1.18740 0.85980 0.89156 0.87202 1.44974 1.03334 1.18758 1.66212 1.21849 0.94260 0.86612 0.97879 1.21883 0.90575 1.02059 1.01357 1.19031 0.94701 0.91457 0.96108 1.21185 0.92620 1.00014 1.42351 0.92604 1.25026 0.98975 0.95062 0.95395 1.69960 1.35280 1.05086 1.42961 0.86564 0.85056 0.77736 0.78479 1.20619 1.21169 1.19866 1.67396 1.11359 1.27718 1.20847 1.24067 0.88254 0.96973 0.91048 0.92750 0.91162 0.90727 0.90218 0.90657 0.91073 0.84361 0.84171 0.75818 0.91672 0.91663 0.92468 0.92484 0.96252 0.96233 0.92878 0.80157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 10.35 59.84 0.62 1.24 16 2 N -0.62 -5.58 3.27 -190.76 -0.62 -6.20 16 3 C 0.07 0.37 8.67 59.85 0.52 0.89 16 4 C 0.58 7.21 7.46 -12.47 -0.09 7.12 16 5 O -0.54 -8.59 16.41 5.28 0.09 -8.50 16 6 C -0.27 -3.39 5.71 -104.82 -0.60 -3.99 16 7 C 0.02 0.32 9.66 -39.29 -0.38 -0.06 16 8 C -0.25 -3.30 9.25 -39.65 -0.37 -3.67 16 9 C 0.43 6.06 7.64 -155.28 -1.19 4.87 16 10 N -0.71 -9.93 5.71 -60.45 -0.34 -10.27 16 11 C 0.12 1.80 4.87 -4.04 -0.02 1.78 16 12 C -0.12 -2.24 5.27 -26.73 -0.14 -2.38 16 13 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 14 C -0.52 -14.27 9.11 -34.44 -0.31 -14.59 16 15 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 18 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 N -0.55 -7.48 10.38 -12.14 -0.13 -7.61 16 23 C 0.16 1.77 9.06 -17.13 -0.16 1.61 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.29 7.87 -51.93 -0.41 -0.11 16 26 H 0.07 0.62 7.60 -51.92 -0.39 0.22 16 27 H 0.08 0.24 7.76 -51.93 -0.40 -0.16 16 28 H 0.08 0.45 6.37 -51.93 -0.33 0.11 16 29 H 0.07 0.32 6.25 -51.93 -0.32 0.00 16 30 H 0.14 1.66 7.93 -52.49 -0.42 1.25 16 31 H 0.14 1.76 6.66 -52.48 -0.35 1.41 16 32 H 0.41 5.39 8.59 -40.82 -0.35 5.04 16 33 H 0.07 0.99 7.91 -51.93 -0.41 0.58 16 34 H 0.07 1.00 7.91 -51.92 -0.41 0.59 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 40 H 0.18 1.42 3.43 -52.49 -0.18 1.24 16 LS Contribution 332.45 15.07 5.01 5.01 Total: -1.00 -32.79 332.45 -8.27 -41.06 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.63 Total: 1.02 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -2.35 Total: -5.21 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: -0.36 Total: -49.54 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.79 -8.27 -41.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264822807.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.209 kcal (2) G-P(sol) polarization free energy of solvation -32.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds