Wall clock time and date at job start Mon Mar 30 2020 01:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34776 * 119.99906 * 2 1 4 4 O 1.21275 * 119.99834 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99732 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47056 * 180.02562 * 5 3 2 7 7 N 1.46893 * 109.47471 * 179.97438 * 6 5 3 8 8 C 1.46901 * 111.00186 * 66.04501 * 7 6 5 9 9 C 1.50693 * 109.47511 * 193.95938 * 8 7 6 10 10 H 1.08004 * 119.99737 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00289 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99874 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00381 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46760 * 60.00119 * 13 11 9 15 15 H 1.48499 * 109.47404 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47172 * 300.00344 * 13 11 9 17 17 C 1.46900 * 111.00186 * 190.00369 * 7 6 5 18 18 C 1.50703 * 109.47016 * 170.00348 * 17 7 6 19 19 C 1.38223 * 119.62264 * 95.01930 * 18 17 7 20 20 C 1.38628 * 119.16031 * 179.97438 * 19 18 17 21 21 C 1.38672 * 118.42475 * 359.97438 * 20 19 18 22 22 C 1.38186 * 119.15778 * 0.02562 * 21 20 19 23 23 N 1.31856 * 119.61279 * 274.99401 * 18 17 7 24 24 H 1.09007 * 109.46726 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46997 * 299.99556 * 1 2 3 26 26 H 1.08992 * 109.47300 * 59.99650 * 1 2 3 27 27 H 0.97006 * 119.99687 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47316 * 60.00296 * 5 3 2 29 29 H 1.09000 * 109.46900 * 299.99916 * 5 3 2 30 30 H 1.09002 * 109.46959 * 59.99902 * 6 5 3 31 31 H 1.09000 * 109.47285 * 300.00580 * 6 5 3 32 32 H 1.09001 * 109.46809 * 313.96000 * 8 7 6 33 33 H 1.09002 * 109.47034 * 73.95355 * 8 7 6 34 34 H 0.97002 * 119.99928 * 180.02562 * 12 11 9 35 35 H 1.08989 * 109.47527 * 49.99888 * 17 7 6 36 36 H 1.08996 * 109.46581 * 289.99458 * 17 7 6 37 37 H 1.07995 * 120.41821 * 359.95030 * 19 18 17 38 38 H 1.08006 * 120.78822 * 180.02562 * 20 19 18 39 39 H 1.07993 * 120.42192 * 179.97438 * 21 20 19 40 40 H 1.08001 * 119.60956 * 180.27218 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2174 0.0005 5 6 3.6459 1.1672 -0.0006 6 6 4.1559 2.6096 0.0002 7 7 5.6249 2.6097 0.0002 8 6 6.1514 2.0536 -1.2533 9 6 7.6186 1.7505 -1.0913 10 1 8.1109 1.9514 -0.1512 11 6 8.3329 1.2178 -2.1435 12 7 7.7335 0.9737 -3.2884 13 14 10.1518 0.8428 -1.9429 14 1 10.3360 -0.1437 -0.8483 15 1 10.6840 0.2805 -3.2101 16 1 10.8812 2.0929 -1.6106 17 6 6.1513 3.9602 0.2392 18 6 7.6376 3.8852 0.4764 19 6 8.5088 4.0876 -0.5774 20 6 9.8742 4.0170 -0.3483 21 6 10.3144 3.7447 0.9382 22 6 9.3839 3.5537 1.9418 23 7 8.0920 3.6277 1.6872 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.9500 -0.8401 -0.0004 28 1 4.0089 0.6536 -0.8909 29 1 4.0095 0.6531 0.8892 30 1 3.7929 3.1229 0.8907 31 1 3.7922 3.1241 -0.8893 32 1 5.6157 1.1361 -1.4971 33 1 6.0164 2.7775 -2.0570 34 1 8.2359 0.5985 -4.0286 35 1 5.6648 4.3902 1.1146 36 1 5.9534 4.5863 -0.6307 37 1 8.1305 4.2977 -1.5669 38 1 10.5784 4.1712 -1.1525 39 1 11.3709 3.6820 1.1529 40 1 9.7187 3.3456 2.9473 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267409276.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:03 Heat of formation + Delta-G solvation = -10.416206 kcal Electronic energy + Delta-G solvation = -21767.084130 eV Core-core repulsion = 18581.306858 eV Total energy + Delta-G solvation = -3185.777271 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.15508 -40.67664 -38.28209 -35.57991 -34.73531 -33.50569 -32.97791 -31.33590 -29.46013 -27.96250 -26.25829 -24.74465 -24.12340 -22.95126 -21.70830 -21.13191 -18.77362 -18.17338 -17.57663 -17.15245 -16.86641 -16.74119 -16.45878 -16.14826 -15.94082 -15.35442 -14.83601 -14.58277 -14.46430 -14.12536 -13.96088 -13.89589 -13.56466 -13.38414 -13.12308 -12.94724 -12.81552 -12.51927 -12.43220 -12.20309 -11.98242 -11.57307 -11.28213 -10.96228 -10.55264 -10.39079 -10.11732 -10.10618 -9.39406 -9.04879 -8.13740 -6.11472 0.47224 0.68468 1.41243 1.44109 1.49254 1.61762 2.26422 2.44408 3.00084 3.23172 3.52807 3.62476 3.92376 4.07184 4.08434 4.19965 4.25697 4.42114 4.48165 4.51768 4.59111 4.63194 4.69263 4.73811 4.92197 4.94430 4.98148 5.00880 5.10461 5.25048 5.27563 5.46573 5.47782 5.56853 5.74898 6.05653 6.12764 6.30965 6.53308 6.60746 6.94391 7.24684 7.37550 7.49026 8.96470 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019327 B = 0.005272 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.423467 B = 5309.663555 C = 6285.723975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.726 5.726 3 C 0.517 3.483 4 O -0.584 6.584 5 C -0.128 4.128 6 C 0.079 3.921 7 N -0.533 5.533 8 C 0.199 3.801 9 C -0.489 4.489 10 H 0.072 0.928 11 C 0.017 3.983 12 N -0.931 5.931 13 Si 0.924 3.076 14 H -0.284 1.284 15 H -0.296 1.296 16 H -0.231 1.231 17 C 0.116 3.884 18 C 0.146 3.854 19 C -0.105 4.105 20 C -0.106 4.106 21 C -0.177 4.177 22 C 0.066 3.934 23 N -0.497 5.497 24 H 0.112 0.888 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.418 0.582 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.077 0.923 31 H 0.016 0.984 32 H 0.019 0.981 33 H -0.036 1.036 34 H 0.259 0.741 35 H 0.088 0.912 36 H 0.037 0.963 37 H 0.111 0.889 38 H 0.133 0.867 39 H 0.155 0.845 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.602 -0.167 7.244 8.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.378 5.378 3 C 0.304 3.696 4 O -0.465 6.465 5 C -0.168 4.168 6 C -0.049 4.049 7 N -0.258 5.258 8 C 0.073 3.927 9 C -0.528 4.528 10 H 0.090 0.910 11 C -0.182 4.182 12 N -0.573 5.573 13 Si 0.750 3.250 14 H -0.210 1.210 15 H -0.223 1.223 16 H -0.154 1.154 17 C -0.013 4.013 18 C 0.007 3.993 19 C -0.125 4.125 20 C -0.132 4.132 21 C -0.197 4.197 22 C -0.089 4.089 23 N -0.207 5.207 24 H 0.130 0.870 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.254 0.746 28 H 0.110 0.890 29 H 0.131 0.869 30 H 0.096 0.904 31 H 0.034 0.966 32 H 0.037 0.963 33 H -0.018 1.018 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.056 0.944 37 H 0.129 0.871 38 H 0.151 0.849 39 H 0.172 0.828 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -4.466 0.081 8.141 9.286 hybrid contribution 1.320 -0.275 -1.996 2.409 sum -3.146 -0.194 6.145 6.906 Atomic orbital electron populations 1.21681 0.78627 1.04247 1.01391 1.45789 1.08564 1.08601 1.74889 1.20832 0.90418 0.83755 0.74551 1.90649 1.71360 1.32927 1.51561 1.21538 0.90362 0.99181 1.05686 1.21644 0.87213 0.95685 1.00364 1.62040 1.05969 1.20504 1.37271 1.19608 0.95316 0.93342 0.84419 1.21598 0.94227 1.38782 0.98155 0.90995 1.25528 1.01841 0.95846 0.94948 1.70067 1.37708 1.45840 1.03651 0.86143 0.82208 0.80235 0.76439 1.21009 1.22276 1.15440 1.20751 0.90316 0.90050 1.00136 1.20679 0.95804 0.93987 0.88788 1.21639 0.94335 0.97731 0.98815 1.21580 0.95332 0.98497 0.97751 1.22253 1.02063 1.01915 0.93492 1.22980 0.87917 0.97488 1.00533 1.67362 1.17672 1.12797 1.22917 0.86979 0.92911 0.93456 0.74565 0.88990 0.86852 0.90435 0.96592 0.96272 1.01808 0.93172 0.89377 0.94448 0.87121 0.84872 0.82779 0.80873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.49 10.70 127.77 1.37 2.86 16 2 N -0.73 -15.89 5.71 -484.52 -2.77 -18.66 16 3 C 0.52 15.89 7.83 87.66 0.69 16.58 16 4 O -0.58 -22.27 15.98 -3.01 -0.05 -22.31 16 5 C -0.13 -4.12 5.66 29.85 0.17 -3.95 16 6 C 0.08 2.98 4.25 86.30 0.37 3.35 16 7 N -0.53 -22.69 4.56 -905.40 -4.13 -26.82 16 8 C 0.20 9.93 4.55 85.55 0.39 10.32 16 9 C -0.49 -25.44 5.77 25.60 0.15 -25.29 16 10 H 0.07 3.76 4.92 -2.91 -0.01 3.74 16 11 C 0.02 0.88 5.46 84.65 0.46 1.34 16 12 N -0.93 -53.25 13.29 21.45 0.28 -52.96 16 13 Si 0.92 41.56 28.69 68.60 1.97 43.52 16 14 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 15 H -0.30 -13.51 7.11 99.48 0.71 -12.81 16 16 H -0.23 -9.19 5.34 99.48 0.53 -8.66 16 17 C 0.12 4.61 5.28 85.56 0.45 5.06 16 18 C 0.15 5.97 4.01 42.55 0.17 6.14 16 19 C -0.10 -4.21 6.31 22.36 0.14 -4.07 16 20 C -0.11 -3.75 8.01 22.47 0.18 -3.57 16 21 C -0.18 -5.54 10.11 22.36 0.23 -5.31 16 22 C 0.07 2.19 11.18 84.67 0.95 3.13 16 23 N -0.50 -19.50 10.16 -183.88 -1.87 -21.37 16 24 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 27 H 0.42 6.69 8.83 -92.70 -0.82 5.87 16 28 H 0.09 3.17 6.31 -2.39 -0.02 3.16 16 29 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 30 H 0.08 2.78 7.89 -2.39 -0.02 2.76 16 31 H 0.02 0.64 8.08 -2.39 -0.02 0.62 16 32 H 0.02 1.01 5.98 -2.39 -0.01 1.00 16 33 H -0.04 -1.96 7.99 -2.39 -0.02 -1.98 16 34 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 35 H 0.09 3.20 7.93 -2.39 -0.02 3.18 16 36 H 0.04 1.48 7.91 -2.39 -0.02 1.46 16 37 H 0.11 4.73 7.99 -2.91 -0.02 4.70 16 38 H 0.13 4.27 7.59 -2.91 -0.02 4.25 16 39 H 0.15 3.65 8.06 -2.91 -0.02 3.62 16 40 H 0.17 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -68.40 325.46 -0.81 -69.21 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.05 Total: 22.80 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 5.70 Total: 6.59 kcal Atomic # 7 Polarization: -111.33 SS G_CDS: -8.48 Total: -119.81 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.05 Total: -22.31 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 1.97 Total: 43.52 kcal Total: -68.40 -0.81 -69.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267409276.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.795 kcal (2) G-P(sol) polarization free energy of solvation -68.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds