Wall clock time and date at job start Mon Mar 30 2020 01:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35901 * 116.99391 * 2 1 4 4 C 1.38746 * 120.06247 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.94922 * 180.02562 * 4 3 2 6 6 C 1.38294 * 120.05194 * 359.71695 * 5 4 3 7 7 C 1.38248 * 120.10831 * 0.55233 * 6 5 4 8 8 C 1.38159 * 120.05589 * 359.45173 * 7 6 5 9 9 C 1.50706 * 120.02608 * 180.29094 * 8 7 6 10 10 N 1.46496 * 109.47299 * 259.99867 * 9 8 7 11 11 C 1.37491 * 119.99878 * 180.02562 * 10 9 8 12 12 N 1.37480 * 120.00065 * 0.02562 * 11 10 9 13 13 N 1.30335 * 119.99781 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00163 * 183.82590 * 13 11 10 15 15 C 1.52995 * 109.47616 * 114.39957 * 14 13 11 16 16 C 1.50707 * 109.47341 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99420 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99950 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00255 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99844 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47254 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47331 * 119.99793 * 20 18 16 23 23 H 1.48493 * 109.47317 * 240.00080 * 20 18 16 24 24 H 1.08989 * 109.46987 * 299.99814 * 1 2 3 25 25 H 1.09000 * 109.46936 * 59.99884 * 1 2 3 26 26 H 1.09003 * 109.46809 * 179.97438 * 1 2 3 27 27 H 1.08007 * 120.02556 * 359.97438 * 4 3 2 28 28 H 1.07997 * 119.97690 * 179.97438 * 5 4 3 29 29 H 1.08002 * 119.94492 * 180.30103 * 6 5 4 30 30 H 1.08006 * 119.96820 * 179.72106 * 7 6 5 31 31 H 1.09000 * 109.47243 * 20.00334 * 9 8 7 32 32 H 1.09004 * 109.46660 * 139.99805 * 9 8 7 33 33 H 0.97004 * 120.00170 * 0.02562 * 10 9 8 34 34 H 0.97001 * 119.99958 * 354.41774 * 12 11 10 35 35 H 0.96996 * 120.00264 * 174.42488 * 12 11 10 36 36 H 1.09002 * 109.47586 * 234.40985 * 14 13 11 37 37 H 1.09005 * 109.47187 * 354.40234 * 14 13 11 38 38 H 1.08996 * 109.47528 * 300.00396 * 15 14 13 39 39 H 1.09001 * 109.47015 * 60.00200 * 15 14 13 40 40 H 0.97001 * 120.00425 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3019 3.6759 0.0048 7 6 4.0559 2.5171 -0.0002 8 6 3.4311 1.2849 0.0002 9 6 4.2538 0.0222 0.0013 10 7 4.3200 -0.5187 -1.3585 11 6 5.0210 -1.6755 -1.6048 12 7 5.6594 -2.3249 -0.5748 13 7 5.0803 -2.1565 -2.8147 14 6 5.7558 -3.4324 -3.0635 15 6 4.7323 -4.4685 -3.5324 16 6 5.4272 -5.7812 -3.7877 17 1 6.4922 -5.8679 -3.6307 18 6 4.7032 -6.8714 -4.2217 19 7 3.4065 -6.7657 -4.4134 20 14 5.5646 -8.4983 -4.5388 21 1 7.0143 -8.3553 -4.2507 22 1 4.9862 -9.5446 -3.6580 23 1 5.3779 -8.8886 -5.9594 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2127 2.3203 -0.0014 28 1 1.3339 4.5114 -0.0019 29 1 3.7922 4.6382 0.0093 30 1 5.1344 2.5753 -0.0001 31 1 5.2611 0.2451 0.3532 32 1 3.7922 -0.7115 0.6622 33 1 3.8692 -0.0607 -2.0852 34 1 5.6840 -1.9258 0.3089 35 1 6.0853 -3.1821 -0.7319 36 1 6.5153 -3.2975 -3.8336 37 1 6.2282 -3.7788 -2.1442 38 1 3.9729 -4.6035 -2.7623 39 1 4.2599 -4.1222 -4.4517 40 1 2.8970 -7.5327 -4.7183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273338707.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:08 Heat of formation + Delta-G solvation = 19.760983 kcal Electronic energy + Delta-G solvation = -20613.301111 eV Core-core repulsion = 17428.832421 eV Total energy + Delta-G solvation = -3184.468690 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.52176 -38.12589 -37.53370 -34.71430 -33.10706 -31.50017 -31.07661 -30.34433 -28.81601 -27.54598 -25.95006 -24.04637 -22.39686 -21.68790 -20.96497 -19.28944 -18.26071 -17.32184 -16.57379 -16.44993 -16.01403 -15.88283 -15.60648 -14.82186 -14.47509 -14.41207 -14.26270 -13.65191 -13.31565 -13.12735 -12.86797 -12.70945 -12.20875 -12.09467 -11.96827 -11.61336 -11.34691 -11.04582 -11.03729 -10.87321 -10.50579 -9.92778 -9.49833 -9.23330 -9.02238 -8.68294 -8.44044 -8.30504 -8.12827 -6.97807 -5.87279 -3.89844 0.95963 1.16803 3.07529 3.29327 3.37550 3.44303 3.48673 3.66268 3.81876 4.35272 4.52870 4.54387 4.58589 4.74927 4.84455 4.96336 5.01368 5.07819 5.29142 5.34579 5.39826 5.47446 5.49955 5.73942 6.02194 6.15292 6.18428 6.24393 6.49353 6.55786 6.88907 6.96592 7.15728 7.25566 7.54021 7.84369 7.90117 8.08062 8.20461 8.48735 8.62522 9.18498 9.40333 9.73127 11.23803 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028249 B = 0.003118 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.939507 B = 8978.326864 C = 9615.329505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.304 6.304 3 C 0.149 3.851 4 C -0.214 4.214 5 C -0.074 4.074 6 C -0.163 4.163 7 C -0.061 4.061 8 C -0.137 4.137 9 C 0.180 3.820 10 N -0.724 5.724 11 C 0.605 3.395 12 N -0.900 5.900 13 N -0.656 5.656 14 C 0.087 3.913 15 C 0.031 3.969 16 C -0.518 4.518 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.103 0.897 27 H 0.129 0.871 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.131 0.869 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.412 0.588 34 H 0.381 0.619 35 H 0.411 0.589 36 H 0.053 0.947 37 H 0.013 0.987 38 H 0.010 0.990 39 H 0.021 0.979 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.819 22.037 14.542 26.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.216 6.216 3 C 0.102 3.898 4 C -0.233 4.233 5 C -0.092 4.092 6 C -0.182 4.182 7 C -0.080 4.080 8 C -0.138 4.138 9 C 0.055 3.945 10 N -0.370 5.370 11 C 0.239 3.761 12 N -0.460 5.460 13 N -0.396 5.396 14 C -0.043 4.043 15 C -0.007 4.007 16 C -0.557 4.557 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.210 1.210 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.121 0.879 27 H 0.147 0.853 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.149 0.851 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.249 0.751 34 H 0.208 0.792 35 H 0.245 0.755 36 H 0.072 0.928 37 H 0.031 0.969 38 H 0.028 0.972 39 H 0.040 0.960 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.114 21.880 13.707 26.144 hybrid contribution 0.364 -1.193 0.533 1.356 sum -3.750 20.687 14.240 25.392 Atomic orbital electron populations 1.23105 0.78199 1.04441 1.01076 1.86205 1.21428 1.26159 1.87802 1.18935 0.91772 0.84601 0.94453 1.21262 1.00194 0.92340 1.09473 1.20980 0.94745 0.96962 0.96534 1.21048 0.93905 0.98420 1.04785 1.20959 1.00081 0.90862 0.96057 1.19179 0.90586 0.95510 1.08533 1.19844 0.97622 0.91771 0.85233 1.43655 1.58535 1.25983 1.08801 1.18808 0.87230 0.85085 0.84985 1.43136 1.64620 1.26895 1.11363 1.72419 1.35018 1.18154 1.14051 1.21768 0.97169 0.88115 0.97248 1.19077 0.93687 0.91161 0.96784 1.21316 0.94435 0.95553 1.44400 0.92792 1.25020 0.94826 0.98879 0.95780 1.70004 1.06084 1.30354 1.46915 0.86559 0.79760 0.83989 0.77806 1.19787 1.21154 1.21045 0.92807 0.92505 0.87886 0.85344 0.85823 0.85782 0.85120 0.92051 0.91445 0.75123 0.79195 0.75476 0.92829 0.96894 0.97200 0.96035 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.30 -3.60 9.73 -19.43 -0.19 -3.78 16 3 C 0.15 1.62 6.66 -39.22 -0.26 1.35 16 4 C -0.21 -1.91 9.04 -39.44 -0.36 -2.26 16 5 C -0.07 -0.58 10.04 -39.60 -0.40 -0.98 16 6 C -0.16 -1.28 10.04 -39.56 -0.40 -1.68 16 7 C -0.06 -0.53 9.66 -39.61 -0.38 -0.92 16 8 C -0.14 -1.43 5.26 -104.47 -0.55 -1.98 16 9 C 0.18 2.02 4.85 -5.19 -0.03 1.99 16 10 N -0.72 -10.66 5.66 -62.97 -0.36 -11.01 16 11 C 0.61 10.96 8.63 -320.09 -2.76 8.20 16 12 N -0.90 -13.59 8.77 30.14 0.26 -13.33 16 13 N -0.66 -14.72 10.62 -61.78 -0.66 -15.37 16 14 C 0.09 2.11 6.26 -4.05 -0.03 2.09 16 15 C 0.03 0.89 5.30 -27.88 -0.15 0.74 16 16 C -0.52 -15.61 9.11 -34.44 -0.31 -15.92 16 17 H 0.05 1.56 7.74 -52.48 -0.41 1.16 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -28.37 13.29 55.43 0.74 -27.63 16 20 Si 0.89 22.50 29.54 -169.99 -5.02 17.48 16 21 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 24 H 0.05 0.34 7.66 -51.94 -0.40 -0.06 16 25 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 26 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.13 0.91 6.30 -52.48 -0.33 0.58 16 28 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 29 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 30 H 0.13 0.92 8.04 -52.48 -0.42 0.50 16 31 H 0.06 0.58 7.80 -51.93 -0.40 0.17 16 32 H 0.07 0.79 7.78 -51.93 -0.40 0.39 16 33 H 0.41 6.31 8.58 -40.82 -0.35 5.96 16 34 H 0.38 4.44 7.38 -40.82 -0.30 4.14 16 35 H 0.41 6.62 6.17 -40.82 -0.25 6.36 16 36 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.01 0.29 5.36 -51.93 -0.28 0.01 16 38 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 336.52 15.07 5.07 5.07 Total: -1.00 -35.87 336.52 -10.49 -46.36 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -5.62 Total: 8.79 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -4.73 Total: -6.57 kcal Atomic # 7 Polarization: -67.33 SS G_CDS: -0.01 Total: -67.35 kcal Atomic # 8 Polarization: -3.60 SS G_CDS: -0.19 Total: -3.78 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.87 -10.49 -46.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273338707.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.119 kcal (2) G-P(sol) polarization free energy of solvation -35.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds