Wall clock time and date at job start Mon Mar 30 2020 01:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35901 * 116.99391 * 2 1 4 4 C 1.38746 * 120.06247 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.94922 * 180.02562 * 4 3 2 6 6 C 1.38294 * 120.05194 * 359.71695 * 5 4 3 7 7 C 1.38248 * 120.10831 * 0.55233 * 6 5 4 8 8 C 1.38159 * 120.05589 * 359.45173 * 7 6 5 9 9 C 1.50706 * 120.02608 * 180.29094 * 8 7 6 10 10 N 1.46496 * 109.47299 * 259.99867 * 9 8 7 11 11 C 1.37491 * 119.99878 * 180.02562 * 10 9 8 12 12 N 1.37480 * 120.00065 * 0.02562 * 11 10 9 13 13 N 1.30335 * 119.99781 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00163 * 183.82590 * 13 11 10 15 15 C 1.52995 * 109.47616 * 114.39957 * 14 13 11 16 16 C 1.50707 * 109.47341 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99420 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99950 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00255 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99844 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47254 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47331 * 119.99793 * 20 18 16 23 23 H 1.48493 * 109.47317 * 240.00080 * 20 18 16 24 24 H 1.08989 * 109.46987 * 299.99814 * 1 2 3 25 25 H 1.09000 * 109.46936 * 59.99884 * 1 2 3 26 26 H 1.09003 * 109.46809 * 179.97438 * 1 2 3 27 27 H 1.08007 * 120.02556 * 359.97438 * 4 3 2 28 28 H 1.07997 * 119.97690 * 179.97438 * 5 4 3 29 29 H 1.08002 * 119.94492 * 180.30103 * 6 5 4 30 30 H 1.08006 * 119.96820 * 179.72106 * 7 6 5 31 31 H 1.09000 * 109.47243 * 20.00334 * 9 8 7 32 32 H 1.09004 * 109.46660 * 139.99805 * 9 8 7 33 33 H 0.97004 * 120.00170 * 0.02562 * 10 9 8 34 34 H 0.97001 * 119.99958 * 354.41774 * 12 11 10 35 35 H 0.96996 * 120.00264 * 174.42488 * 12 11 10 36 36 H 1.09002 * 109.47586 * 234.40985 * 14 13 11 37 37 H 1.09005 * 109.47187 * 354.40234 * 14 13 11 38 38 H 1.08996 * 109.47528 * 300.00396 * 15 14 13 39 39 H 1.09001 * 109.47015 * 60.00200 * 15 14 13 40 40 H 0.97001 * 120.00425 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3019 3.6759 0.0048 7 6 4.0559 2.5171 -0.0002 8 6 3.4311 1.2849 0.0002 9 6 4.2538 0.0222 0.0013 10 7 4.3200 -0.5187 -1.3585 11 6 5.0210 -1.6755 -1.6048 12 7 5.6594 -2.3249 -0.5748 13 7 5.0803 -2.1565 -2.8147 14 6 5.7558 -3.4324 -3.0635 15 6 4.7323 -4.4685 -3.5324 16 6 5.4272 -5.7812 -3.7877 17 1 6.4922 -5.8679 -3.6307 18 6 4.7032 -6.8714 -4.2217 19 7 3.4065 -6.7657 -4.4134 20 14 5.5646 -8.4983 -4.5388 21 1 7.0143 -8.3553 -4.2507 22 1 4.9862 -9.5446 -3.6580 23 1 5.3779 -8.8886 -5.9594 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2127 2.3203 -0.0014 28 1 1.3339 4.5114 -0.0019 29 1 3.7922 4.6382 0.0093 30 1 5.1344 2.5753 -0.0001 31 1 5.2611 0.2451 0.3532 32 1 3.7922 -0.7115 0.6622 33 1 3.8692 -0.0607 -2.0852 34 1 5.6840 -1.9258 0.3089 35 1 6.0853 -3.1821 -0.7319 36 1 6.5153 -3.2975 -3.8336 37 1 6.2282 -3.7788 -2.1442 38 1 3.9729 -4.6035 -2.7623 39 1 4.2599 -4.1222 -4.4517 40 1 2.8970 -7.5327 -4.7183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273338707.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:07 Heat of formation + Delta-G solvation = -4.786805 kcal Electronic energy + Delta-G solvation = -20614.365583 eV Core-core repulsion = 17428.832421 eV Total energy + Delta-G solvation = -3185.533162 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.24936 -39.44730 -38.32253 -36.21769 -34.98237 -33.16253 -32.15201 -31.04684 -30.61237 -28.27011 -27.25089 -25.81805 -23.06130 -23.00875 -22.32550 -20.84688 -19.08326 -18.71686 -18.41983 -17.45724 -17.23748 -16.68223 -16.58673 -16.49890 -15.71122 -15.34605 -15.26163 -14.95020 -14.84373 -14.34319 -14.20593 -13.83786 -13.51272 -13.43938 -13.03340 -12.85017 -12.80631 -12.46980 -12.29352 -12.04299 -12.00618 -11.71596 -11.59342 -11.29731 -10.58612 -9.93084 -9.91582 -9.84825 -9.14356 -8.56989 -8.16977 -6.32001 0.27420 0.49748 1.39534 1.41775 1.55331 2.10893 2.32362 2.40153 2.42743 2.85989 3.13230 3.26548 3.69249 3.87571 4.07143 4.25965 4.36344 4.36582 4.38922 4.45775 4.52371 4.65653 4.71986 4.78693 4.87592 4.88140 5.05114 5.17593 5.38307 5.48935 5.50037 5.59539 5.67412 5.79053 5.87107 5.88091 6.13072 6.23456 6.45225 6.59407 6.85387 7.24162 7.37189 7.88592 8.94241 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028249 B = 0.003118 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.939507 B = 8978.326864 C = 9615.329505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.334 6.334 3 C 0.127 3.873 4 C -0.221 4.221 5 C -0.074 4.074 6 C -0.164 4.164 7 C -0.063 4.063 8 C -0.156 4.156 9 C 0.181 3.819 10 N -0.715 5.715 11 C 0.617 3.383 12 N -0.885 5.885 13 N -0.710 5.710 14 C 0.105 3.895 15 C 0.043 3.957 16 C -0.542 4.542 17 H 0.065 0.935 18 C -0.005 4.005 19 N -0.936 5.936 20 Si 0.975 3.025 21 H -0.258 1.258 22 H -0.276 1.276 23 H -0.278 1.278 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.102 0.898 27 H 0.143 0.857 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.408 0.592 34 H 0.401 0.599 35 H 0.408 0.592 36 H 0.044 0.956 37 H 0.032 0.968 38 H -0.024 1.024 39 H -0.021 1.021 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.793 23.029 15.865 28.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.247 6.247 3 C 0.081 3.919 4 C -0.240 4.240 5 C -0.092 4.092 6 C -0.182 4.182 7 C -0.082 4.082 8 C -0.157 4.157 9 C 0.058 3.942 10 N -0.359 5.359 11 C 0.251 3.749 12 N -0.446 5.446 13 N -0.454 5.454 14 C -0.026 4.026 15 C 0.005 3.995 16 C -0.581 4.581 17 H 0.083 0.917 18 C -0.202 4.202 19 N -0.576 5.576 20 Si 0.798 3.202 21 H -0.182 1.182 22 H -0.201 1.201 23 H -0.203 1.203 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.120 0.880 27 H 0.161 0.839 28 H 0.168 0.832 29 H 0.167 0.833 30 H 0.165 0.835 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.245 0.755 34 H 0.231 0.769 35 H 0.242 0.758 36 H 0.063 0.937 37 H 0.050 0.950 38 H -0.006 1.006 39 H -0.003 1.003 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.088 22.929 15.111 27.634 hybrid contribution -0.060 -1.328 0.230 1.349 sum -3.148 21.601 15.341 26.681 Atomic orbital electron populations 1.23263 0.76918 1.04869 1.02314 1.86144 1.23041 1.27291 1.88247 1.19215 0.92258 0.84894 0.95546 1.21508 1.01033 0.92209 1.09201 1.21363 0.95197 0.97476 0.95155 1.21402 0.94075 0.99167 1.03593 1.21206 1.01086 0.90491 0.95400 1.19221 0.90562 0.95656 1.10239 1.20010 0.99196 0.92135 0.82901 1.43890 1.56973 1.24686 1.10343 1.19000 0.85969 0.85296 0.84652 1.42991 1.63402 1.26429 1.11775 1.72374 1.38282 1.18135 1.16640 1.21338 0.95432 0.88216 0.97641 1.18905 0.93959 0.92935 0.93741 1.21703 0.95104 0.96287 1.44972 0.91694 1.26113 0.95561 1.03559 0.94984 1.70163 1.08069 1.31981 1.47433 0.85263 0.79038 0.78013 0.77861 1.18161 1.20117 1.20347 0.90872 0.91911 0.87962 0.83939 0.83238 0.83347 0.83496 0.89596 0.92088 0.75548 0.76859 0.75788 0.93749 0.95039 1.00571 1.00295 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.33 -8.00 9.73 -92.43 -0.90 -8.90 16 3 C 0.13 2.68 6.66 22.51 0.15 2.83 16 4 C -0.22 -3.62 9.04 22.36 0.20 -3.41 16 5 C -0.07 -0.97 10.04 22.26 0.22 -0.74 16 6 C -0.16 -2.12 10.04 22.29 0.22 -1.90 16 7 C -0.06 -0.97 9.66 22.25 0.22 -0.76 16 8 C -0.16 -3.09 5.26 -19.77 -0.10 -3.20 16 9 C 0.18 3.86 4.85 85.64 0.42 4.28 16 10 N -0.71 -20.86 5.66 -353.14 -2.00 -22.86 16 11 C 0.62 22.33 8.63 260.54 2.25 24.58 16 12 N -0.89 -25.89 8.77 -58.57 -0.51 -26.40 16 13 N -0.71 -32.69 10.62 -349.37 -3.71 -36.40 16 14 C 0.10 5.22 6.26 86.38 0.54 5.76 16 15 C 0.04 2.59 5.30 29.85 0.16 2.75 16 16 C -0.54 -33.32 9.11 25.60 0.23 -33.09 16 17 H 0.06 3.76 7.74 -2.91 -0.02 3.73 16 18 C 0.00 -0.30 5.46 84.66 0.46 0.16 16 19 N -0.94 -60.90 13.29 21.45 0.28 -60.61 16 20 Si 0.97 46.28 29.54 68.60 2.03 48.30 16 21 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 24 H 0.07 0.87 7.66 -2.39 -0.02 0.85 16 25 H 0.06 0.92 7.66 -2.39 -0.02 0.90 16 26 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.14 1.79 6.30 -2.91 -0.02 1.77 16 28 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 29 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 30 H 0.15 1.68 8.04 -2.91 -0.02 1.66 16 31 H 0.09 1.42 7.80 -2.39 -0.02 1.40 16 32 H 0.06 1.40 7.78 -2.39 -0.02 1.38 16 33 H 0.41 12.64 8.58 -92.71 -0.80 11.84 16 34 H 0.40 8.61 7.38 -92.71 -0.68 7.92 16 35 H 0.41 12.79 6.17 -92.71 -0.57 12.22 16 36 H 0.04 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.03 1.41 5.36 -2.38 -0.01 1.40 16 38 H -0.02 -1.60 8.14 -2.39 -0.02 -1.62 16 39 H -0.02 -1.46 8.14 -2.39 -0.02 -1.48 16 40 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -80.13 336.52 0.29 -79.84 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: -0.98 Total: 28.33 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 6.08 Total: -1.29 kcal Atomic # 7 Polarization: -140.34 SS G_CDS: -5.94 Total: -146.28 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -0.90 Total: -8.90 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.30 kcal Total: -80.13 0.29 -79.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273338707.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.050 kcal (2) G-P(sol) polarization free energy of solvation -80.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds