Wall clock time and date at job start Mon Mar 30 2020 02:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00098 * 2 1 4 4 H 1.48492 * 109.47098 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46689 * 299.99629 * 3 2 1 6 6 H 1.48493 * 109.47045 * 59.99456 * 3 2 1 7 7 C 1.37877 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99896 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00010 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47169 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47070 * 180.02562 * 10 9 7 12 12 C 1.46900 * 110.99752 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47296 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47554 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47181 * 179.97438 * 14 13 12 16 16 C 1.53001 * 109.47181 * 180.02562 * 15 14 13 17 17 O 1.42902 * 109.47386 * 180.02562 * 16 15 14 18 18 C 1.35898 * 116.99694 * 180.02562 * 17 16 15 19 19 C 1.38735 * 120.05254 * 179.97438 * 18 17 16 20 20 C 1.38144 * 119.94607 * 179.97438 * 19 18 17 21 21 C 1.38266 * 120.05233 * 0.02562 * 20 19 18 22 22 C 1.38269 * 120.11595 * 359.95530 * 21 20 19 23 23 C 1.38142 * 120.04935 * 0.04230 * 22 21 20 24 24 H 0.97005 * 120.00228 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47399 * 60.00333 * 9 7 2 26 26 H 1.09005 * 109.47412 * 299.99673 * 9 7 2 27 27 H 1.08998 * 109.46865 * 59.99790 * 10 9 7 28 28 H 1.08994 * 109.46930 * 299.99845 * 10 9 7 29 29 H 1.00902 * 110.99865 * 303.94515 * 11 10 9 30 30 H 1.08999 * 109.47137 * 59.99625 * 12 11 10 31 31 H 1.08998 * 109.47261 * 299.99837 * 12 11 10 32 32 H 1.09004 * 109.47133 * 59.99351 * 13 12 11 33 33 H 1.09009 * 109.47326 * 299.99873 * 13 12 11 34 34 H 1.08999 * 109.46920 * 59.99781 * 14 13 12 35 35 H 1.08993 * 109.46801 * 299.99963 * 14 13 12 36 36 H 1.08999 * 109.47370 * 60.00060 * 15 14 13 37 37 H 1.09006 * 109.47017 * 299.99902 * 15 14 13 38 38 H 1.08999 * 109.46920 * 59.99785 * 16 15 14 39 39 H 1.08998 * 109.47220 * 300.00155 * 16 15 14 40 40 H 1.08002 * 120.02704 * 359.70561 * 19 18 17 41 41 H 1.08001 * 119.97447 * 179.97438 * 20 19 18 42 42 H 1.08000 * 119.94089 * 179.97438 * 21 20 19 43 43 H 1.07992 * 119.97577 * 180.02562 * 22 21 20 44 44 H 1.08005 * 120.02748 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5107 -4.9343 0.0012 12 6 2.4351 -6.0759 0.0018 13 6 1.6351 -7.3800 0.0018 14 6 2.5979 -8.5691 0.0018 15 6 1.7978 -9.8732 0.0024 16 6 2.7606 -11.0623 0.0030 17 8 2.0134 -12.2803 0.0030 18 6 2.7229 -13.4394 0.0040 19 6 2.0615 -14.6589 0.0046 20 6 2.7849 -15.8357 0.0052 21 6 4.1671 -15.7989 0.0057 22 6 4.8287 -14.5848 0.0047 23 6 4.1098 -13.4052 0.0041 24 1 -0.4851 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8712 -3.6039 0.8922 28 1 2.8725 -3.6048 -0.8877 29 1 0.8735 -4.9842 0.7820 30 1 3.0625 -6.0349 0.8922 31 1 3.0637 -6.0349 -0.8877 32 1 1.0074 -7.4212 -0.8884 33 1 1.0068 -7.4209 0.8916 34 1 3.2259 -8.5281 0.8917 35 1 3.2258 -8.5281 -0.8882 36 1 1.1695 -9.9144 -0.8874 37 1 1.1701 -9.9139 0.8926 38 1 3.3886 -11.0208 0.8930 39 1 3.3887 -11.0217 -0.8870 40 1 0.9819 -14.6882 0.0090 41 1 2.2705 -16.7854 0.0060 42 1 4.7309 -16.7200 0.0065 43 1 5.9083 -14.5586 0.0047 44 1 4.6269 -12.4570 0.0037 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276143150.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:09 Heat of formation + Delta-G solvation = -45.276357 kcal Electronic energy + Delta-G solvation = -19440.894125 eV Core-core repulsion = 16357.145548 eV Total energy + Delta-G solvation = -3083.748577 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.43669 -37.93817 -36.79348 -34.88718 -32.96078 -31.50913 -31.01531 -29.94755 -28.43309 -25.58545 -23.84052 -22.97484 -22.32893 -21.29127 -21.25913 -20.32015 -18.54935 -16.73158 -16.46929 -16.29869 -16.08708 -15.72828 -14.89442 -14.74781 -14.42422 -14.19156 -13.87761 -13.75137 -13.51573 -13.28471 -12.63473 -12.48771 -12.33626 -12.01443 -11.94580 -11.71105 -11.33144 -11.12938 -11.09727 -11.04605 -10.92903 -10.86455 -10.61723 -10.48448 -9.96928 -9.39706 -9.35964 -9.12292 -8.56923 -8.35138 -7.80759 -5.99370 -4.01954 0.94784 1.07351 2.81938 3.31374 3.38608 3.41389 3.42721 4.37323 4.43225 4.48056 4.55494 4.56830 4.74127 4.77529 4.87020 4.97165 5.00165 5.04251 5.13768 5.27447 5.36443 5.37263 5.45154 5.58863 5.63103 5.70294 5.78590 5.86456 5.92831 5.97959 6.02529 6.14704 6.24160 6.30223 6.36349 6.40135 6.45324 6.98719 7.08150 7.49656 7.73846 7.83927 7.97458 8.09302 8.44321 9.05566 9.61850 11.12110 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.073306 B = 0.001664 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.870143 B =16825.080083 C =17157.976346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.024 3.976 10 C 0.066 3.934 11 N -0.694 5.694 12 C 0.058 3.942 13 C -0.116 4.116 14 C -0.114 4.114 15 C -0.118 4.118 16 C 0.059 3.941 17 O -0.315 6.315 18 C 0.133 3.867 19 C -0.156 4.156 20 C -0.082 4.082 21 C -0.163 4.163 22 C -0.081 4.081 23 C -0.211 4.211 24 H 0.260 0.740 25 H 0.025 0.975 26 H 0.014 0.986 27 H 0.014 0.986 28 H 0.057 0.943 29 H 0.335 0.665 30 H 0.021 0.979 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.413 -31.455 0.786 32.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.063 4.063 11 N -0.325 5.325 12 C -0.072 4.072 13 C -0.154 4.154 14 C -0.152 4.152 15 C -0.155 4.155 16 C -0.016 4.016 17 O -0.229 6.229 18 C 0.087 3.913 19 C -0.174 4.174 20 C -0.100 4.100 21 C -0.181 4.181 22 C -0.099 4.099 23 C -0.229 4.229 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.032 0.968 27 H 0.033 0.967 28 H 0.076 0.924 29 H 0.153 0.847 30 H 0.039 0.961 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.980 -31.287 0.098 32.056 hybrid contribution 1.061 1.073 0.937 1.776 sum 8.041 -30.214 1.035 31.283 Atomic orbital electron populations 1.69986 1.06034 1.26473 1.50741 1.25010 0.94847 0.99235 0.95306 0.86525 0.80059 0.83763 0.77582 1.19783 1.20958 1.21032 1.21223 0.93028 0.91037 1.50757 0.92712 1.19086 0.94060 0.90484 0.97739 1.22155 0.96972 0.88571 0.98565 1.60584 1.19877 1.02242 1.49759 1.21924 0.94749 0.90572 0.99928 1.21550 0.98063 0.92928 1.02856 1.21457 0.98361 0.93040 1.02380 1.21565 0.98265 0.91728 1.03986 1.22926 0.95102 0.82151 1.01428 1.86076 1.36032 1.12557 1.88249 1.19071 0.90336 0.86402 0.95476 1.20495 1.00607 0.89764 1.06548 1.20986 0.94065 0.97451 0.97455 1.21076 0.94572 0.97933 1.04539 1.20977 0.99844 0.91938 0.97110 1.21318 0.93022 0.99762 1.08840 0.93046 0.95618 0.96801 0.96738 0.92419 0.84744 0.96101 0.91558 0.90912 0.92035 0.91824 0.91562 0.90585 0.90732 0.91983 0.91926 0.85188 0.85395 0.85962 0.85813 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.16 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.63 5.23 -27.88 -0.15 0.48 16 10 C 0.07 1.41 5.62 -3.82 -0.02 1.39 16 11 N -0.69 -12.58 6.50 -113.78 -0.74 -13.32 16 12 C 0.06 0.83 5.69 -3.83 -0.02 0.80 16 13 C -0.12 -1.31 5.47 -26.73 -0.15 -1.46 16 14 C -0.11 -1.01 5.21 -26.73 -0.14 -1.15 16 15 C -0.12 -0.99 5.58 -26.73 -0.15 -1.14 16 16 C 0.06 0.48 4.74 37.16 0.18 0.66 16 17 O -0.32 -3.25 10.14 -19.42 -0.20 -3.44 16 18 C 0.13 1.28 6.69 -39.22 -0.26 1.02 16 19 C -0.16 -1.34 9.99 -39.43 -0.39 -1.73 16 20 C -0.08 -0.58 10.04 -39.61 -0.40 -0.97 16 21 C -0.16 -1.12 10.04 -39.56 -0.40 -1.52 16 22 C -0.08 -0.59 10.04 -39.61 -0.40 -0.99 16 23 C -0.21 -1.77 9.04 -39.44 -0.36 -2.13 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.34 5.84 8.73 -39.29 -0.34 5.50 16 30 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 39 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 40 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.12 0.58 8.06 -52.49 -0.42 0.15 16 43 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.13 0.90 6.30 -52.48 -0.33 0.57 16 LS Contribution 365.09 15.07 5.50 5.50 Total: -1.00 -31.58 365.09 -10.56 -42.14 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -7.78 Total: -0.75 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -3.06 Total: -20.49 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.00 Total: -39.75 kcal Atomic # 8 Polarization: -3.25 SS G_CDS: -0.20 Total: -3.44 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.58 -10.56 -42.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276143150.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.138 kcal (2) G-P(sol) polarization free energy of solvation -31.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds