Wall clock time and date at job start Mon Mar 30 2020 02:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00098 * 2 1 4 4 H 1.48492 * 109.47098 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46689 * 299.99629 * 3 2 1 6 6 H 1.48493 * 109.47045 * 59.99456 * 3 2 1 7 7 C 1.37877 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99896 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00010 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47169 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47070 * 180.02562 * 10 9 7 12 12 C 1.46900 * 110.99752 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47296 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47554 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47181 * 179.97438 * 14 13 12 16 16 C 1.53001 * 109.47181 * 180.02562 * 15 14 13 17 17 O 1.42902 * 109.47386 * 180.02562 * 16 15 14 18 18 C 1.35898 * 116.99694 * 180.02562 * 17 16 15 19 19 C 1.38735 * 120.05254 * 179.97438 * 18 17 16 20 20 C 1.38144 * 119.94607 * 179.97438 * 19 18 17 21 21 C 1.38266 * 120.05233 * 0.02562 * 20 19 18 22 22 C 1.38269 * 120.11595 * 359.95530 * 21 20 19 23 23 C 1.38142 * 120.04935 * 0.04230 * 22 21 20 24 24 H 0.97005 * 120.00228 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47399 * 60.00333 * 9 7 2 26 26 H 1.09005 * 109.47412 * 299.99673 * 9 7 2 27 27 H 1.08998 * 109.46865 * 59.99790 * 10 9 7 28 28 H 1.08994 * 109.46930 * 299.99845 * 10 9 7 29 29 H 1.00902 * 110.99865 * 303.94515 * 11 10 9 30 30 H 1.08999 * 109.47137 * 59.99625 * 12 11 10 31 31 H 1.08998 * 109.47261 * 299.99837 * 12 11 10 32 32 H 1.09004 * 109.47133 * 59.99351 * 13 12 11 33 33 H 1.09009 * 109.47326 * 299.99873 * 13 12 11 34 34 H 1.08999 * 109.46920 * 59.99781 * 14 13 12 35 35 H 1.08993 * 109.46801 * 299.99963 * 14 13 12 36 36 H 1.08999 * 109.47370 * 60.00060 * 15 14 13 37 37 H 1.09006 * 109.47017 * 299.99902 * 15 14 13 38 38 H 1.08999 * 109.46920 * 59.99785 * 16 15 14 39 39 H 1.08998 * 109.47220 * 300.00155 * 16 15 14 40 40 H 1.08002 * 120.02704 * 359.70561 * 19 18 17 41 41 H 1.08001 * 119.97447 * 179.97438 * 20 19 18 42 42 H 1.08000 * 119.94089 * 179.97438 * 21 20 19 43 43 H 1.07992 * 119.97577 * 180.02562 * 22 21 20 44 44 H 1.08005 * 120.02748 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5107 -4.9343 0.0012 12 6 2.4351 -6.0759 0.0018 13 6 1.6351 -7.3800 0.0018 14 6 2.5979 -8.5691 0.0018 15 6 1.7978 -9.8732 0.0024 16 6 2.7606 -11.0623 0.0030 17 8 2.0134 -12.2803 0.0030 18 6 2.7229 -13.4394 0.0040 19 6 2.0615 -14.6589 0.0046 20 6 2.7849 -15.8357 0.0052 21 6 4.1671 -15.7989 0.0057 22 6 4.8287 -14.5848 0.0047 23 6 4.1098 -13.4052 0.0041 24 1 -0.4851 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8712 -3.6039 0.8922 28 1 2.8725 -3.6048 -0.8877 29 1 0.8735 -4.9842 0.7820 30 1 3.0625 -6.0349 0.8922 31 1 3.0637 -6.0349 -0.8877 32 1 1.0074 -7.4212 -0.8884 33 1 1.0068 -7.4209 0.8916 34 1 3.2259 -8.5281 0.8917 35 1 3.2258 -8.5281 -0.8882 36 1 1.1695 -9.9144 -0.8874 37 1 1.1701 -9.9139 0.8926 38 1 3.3886 -11.0208 0.8930 39 1 3.3887 -11.0217 -0.8870 40 1 0.9819 -14.6882 0.0090 41 1 2.2705 -16.7854 0.0060 42 1 4.7309 -16.7200 0.0065 43 1 5.9083 -14.5586 0.0047 44 1 4.6269 -12.4570 0.0037 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276143150.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:08 Heat of formation + Delta-G solvation = -63.216181 kcal Electronic energy + Delta-G solvation = -19441.672055 eV Core-core repulsion = 16357.145548 eV Total energy + Delta-G solvation = -3084.526506 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.04515 -38.58191 -38.00782 -36.12575 -34.84973 -32.49909 -31.87325 -30.85158 -29.75961 -26.89337 -25.31914 -23.70359 -23.08479 -22.62408 -22.03172 -21.75131 -19.15947 -18.51343 -17.45666 -17.03982 -16.94323 -16.67441 -16.51220 -15.78332 -15.51367 -15.33673 -14.98939 -14.53764 -14.44278 -14.32617 -14.15669 -13.61634 -13.44164 -13.07805 -12.93880 -12.88150 -12.60068 -12.46129 -12.40594 -12.07102 -12.06570 -11.92241 -11.66239 -11.64618 -11.40406 -11.38555 -11.16838 -10.57904 -9.95592 -9.28662 -9.17270 -8.21228 -6.33086 0.39000 0.49181 1.40264 1.40852 1.54274 2.19386 2.40211 2.84840 3.12180 3.35068 3.83684 3.89440 3.94748 4.02543 4.06364 4.18031 4.26253 4.32172 4.45186 4.49138 4.51221 4.52269 4.60918 4.64344 4.66938 4.81269 4.83698 4.92684 5.01475 5.05999 5.08865 5.16341 5.36410 5.38255 5.41627 5.46217 5.48547 5.60511 5.66091 5.78012 5.87698 6.13740 6.28385 6.46367 6.55051 6.84409 7.36443 8.91175 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.073306 B = 0.001664 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.870143 B =16825.080083 C =17157.976346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.029 3.971 10 C 0.083 3.917 11 N -0.703 5.703 12 C 0.058 3.942 13 C -0.109 4.109 14 C -0.105 4.105 15 C -0.112 4.112 16 C 0.059 3.941 17 O -0.335 6.335 18 C 0.107 3.893 19 C -0.174 4.174 20 C -0.085 4.085 21 C -0.166 4.166 22 C -0.088 4.088 23 C -0.221 4.221 24 H 0.264 0.736 25 H -0.006 1.006 26 H -0.008 1.008 27 H 0.019 0.981 28 H 0.057 0.943 29 H 0.338 0.662 30 H 0.030 0.970 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.132 0.868 41 H 0.151 0.849 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.351 -32.375 0.966 33.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.009 4.009 10 C -0.046 4.046 11 N -0.334 5.334 12 C -0.071 4.071 13 C -0.147 4.147 14 C -0.143 4.143 15 C -0.150 4.150 16 C -0.016 4.016 17 O -0.250 6.250 18 C 0.062 3.938 19 C -0.193 4.193 20 C -0.102 4.102 21 C -0.184 4.184 22 C -0.106 4.106 23 C -0.240 4.240 24 H 0.073 0.927 25 H 0.012 0.988 26 H 0.010 0.990 27 H 0.037 0.963 28 H 0.076 0.924 29 H 0.156 0.844 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.150 0.850 41 H 0.169 0.831 42 H 0.164 0.836 43 H 0.163 0.837 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.928 -32.233 0.279 33.448 hybrid contribution 0.430 1.270 0.878 1.603 sum 9.357 -30.963 1.157 32.367 Atomic orbital electron populations 1.70119 1.07861 1.27776 1.51421 1.26001 0.95791 1.03459 0.94558 0.85339 0.79008 0.78485 0.77830 1.18532 1.20312 1.20268 1.21654 0.93576 0.92265 1.50949 0.92099 1.18954 0.94386 0.92432 0.95082 1.21777 0.95582 0.88527 0.98696 1.60506 1.20623 1.02088 1.50189 1.22022 0.94542 0.90135 1.00359 1.21472 0.98182 0.92422 1.02607 1.21357 0.97832 0.91870 1.03251 1.21476 0.98197 0.91786 1.03549 1.22961 0.94960 0.81439 1.02234 1.86031 1.37010 1.13256 1.88687 1.19350 0.91100 0.86442 0.96868 1.20739 1.01060 0.90245 1.07239 1.21315 0.94486 0.97862 0.96573 1.21446 0.94711 0.98830 1.03435 1.21321 1.01043 0.91745 0.96473 1.21521 0.92693 1.00800 1.08995 0.92718 0.98755 0.98994 0.96300 0.92447 0.84409 0.95214 0.91413 0.91715 0.91825 0.90830 0.90819 0.91169 0.91085 0.91101 0.91151 0.85040 0.83116 0.83613 0.83721 0.84496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.51 13.29 21.45 0.28 -57.22 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 44.58 29.54 68.60 2.03 46.60 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.55 -31.69 9.11 25.60 0.23 -31.46 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.03 1.58 5.23 29.85 0.16 1.73 16 10 C 0.08 3.58 5.62 86.30 0.49 4.06 16 11 N -0.70 -25.32 6.50 -513.90 -3.34 -28.66 16 12 C 0.06 1.58 5.69 86.30 0.49 2.07 16 13 C -0.11 -2.33 5.47 30.59 0.17 -2.16 16 14 C -0.10 -1.67 5.21 30.59 0.16 -1.51 16 15 C -0.11 -1.79 5.58 30.59 0.17 -1.62 16 16 C 0.06 0.91 4.74 71.98 0.34 1.25 16 17 O -0.34 -6.90 10.14 -92.40 -0.94 -7.84 16 18 C 0.11 2.06 6.69 22.51 0.15 2.21 16 19 C -0.17 -2.96 9.99 22.37 0.22 -2.74 16 20 C -0.08 -1.08 10.04 22.25 0.22 -0.86 16 21 C -0.17 -1.96 10.04 22.28 0.22 -1.73 16 22 C -0.09 -1.13 10.04 22.25 0.22 -0.91 16 23 C -0.22 -3.52 9.04 22.36 0.20 -3.32 16 24 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 25 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 26 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 27 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.34 11.80 8.73 -89.69 -0.78 11.02 16 30 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.07 0.95 7.66 -2.39 -0.02 0.94 16 39 H 0.07 0.96 7.66 -2.39 -0.02 0.94 16 40 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 41 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 42 H 0.15 0.96 8.06 -2.91 -0.02 0.94 16 43 H 0.15 1.16 8.06 -2.91 -0.02 1.13 16 44 H 0.14 1.77 6.30 -2.91 -0.02 1.75 16 Total: -1.00 -68.11 365.09 2.11 -66.00 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.16 Total: 15.65 kcal Atomic # 6 Polarization: -38.44 SS G_CDS: 3.91 Total: -34.53 kcal Atomic # 7 Polarization: -82.83 SS G_CDS: -3.06 Total: -85.89 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.94 Total: -7.84 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -68.11 2.11 -66.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276143150.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.788 kcal (2) G-P(sol) polarization free energy of solvation -68.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds