Wall clock time and date at job start Mon Mar 30 2020 01:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34950 * 126.03640 * 2 1 4 4 C 1.35318 * 107.74108 * 179.97438 * 3 2 1 5 5 C 1.50706 * 126.03836 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.87050 * 341.01688 * 5 4 3 7 7 C 1.54323 * 110.00895 * 102.11167 * 5 4 3 8 8 C 1.55161 * 102.93784 * 141.68475 * 7 5 4 9 9 C 1.55128 * 101.48565 * 324.32982 * 8 7 5 10 10 N 1.47022 * 109.88116 * 219.99847 * 5 4 3 11 11 C 1.34777 * 125.64585 * 61.45298 * 10 5 4 12 12 O 1.21278 * 120.00348 * 359.97438 * 11 10 5 13 13 C 1.50703 * 119.99618 * 179.97438 * 11 10 5 14 14 C 1.52999 * 109.47244 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47057 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00538 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99661 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00186 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00030 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47297 * 89.99863 * 19 17 15 21 21 H 1.48503 * 109.47261 * 330.00044 * 19 17 15 22 22 H 1.48500 * 109.47454 * 210.00037 * 19 17 15 23 23 C 1.39863 * 107.92394 * 0.25878 * 4 3 2 24 24 N 1.30840 * 108.20134 * 359.55754 * 23 4 3 25 25 H 1.09000 * 109.47353 * 89.99861 * 1 2 3 26 26 H 1.08998 * 109.47576 * 210.00429 * 1 2 3 27 27 H 1.09007 * 109.46940 * 330.00044 * 1 2 3 28 28 H 1.07991 * 126.12907 * 359.95491 * 3 2 1 29 29 H 1.09001 * 110.71852 * 260.04396 * 7 5 4 30 30 H 1.08990 * 110.72194 * 23.32254 * 7 5 4 31 31 H 1.08999 * 111.00389 * 82.57161 * 8 7 5 32 32 H 1.09003 * 111.00266 * 206.41824 * 8 7 5 33 33 H 1.08995 * 110.49722 * 278.45224 * 9 8 7 34 34 H 1.08998 * 110.34057 * 156.06218 * 9 8 7 35 35 H 1.09002 * 109.47387 * 59.99847 * 13 11 10 36 36 H 1.08998 * 109.46985 * 299.99880 * 13 11 10 37 37 H 1.09002 * 109.46997 * 59.99677 * 14 13 11 38 38 H 1.09000 * 109.46625 * 300.00102 * 14 13 11 39 39 H 0.97001 * 119.99697 * 359.97438 * 18 17 15 40 40 H 1.08001 * 125.90116 * 179.73242 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6665 0.0006 5 6 4.7681 1.5452 0.0002 6 1 4.5039 2.5485 -0.3340 7 6 5.3741 1.6069 1.4181 8 6 6.9013 1.5949 1.1440 9 6 6.9868 0.6540 -0.0864 10 7 5.7920 0.9756 -0.8878 11 6 5.6583 0.7754 -2.2139 12 8 4.6231 1.0737 -2.7709 13 6 6.7952 0.1808 -3.0045 14 6 6.3863 0.0601 -4.4739 15 6 7.5229 -0.5350 -5.2643 16 1 8.4449 -0.8002 -4.7685 17 6 7.3857 -0.7410 -6.6208 18 7 6.2628 -0.4185 -7.2246 19 14 8.7949 -1.4780 -7.6008 20 1 8.6675 -2.9575 -7.6149 21 1 10.0862 -1.0983 -6.9732 22 1 8.7514 -0.9642 -8.9934 23 6 3.5346 -0.7321 -0.0051 24 7 2.2891 -1.1328 0.0007 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5139 28 1 1.9282 2.1193 -0.0007 29 1 5.0803 2.5269 1.9234 30 1 5.0802 0.7344 2.0015 31 1 7.2626 2.5943 0.9017 32 1 7.4470 1.1785 1.9908 33 1 6.9630 -0.3892 0.2284 34 1 7.8927 0.8582 -0.6572 35 1 7.0332 -0.8077 -2.6116 36 1 7.6707 0.8249 -2.9224 37 1 6.1480 1.0484 -4.8671 38 1 5.5109 -0.5842 -4.5556 39 1 5.5309 -0.0361 -6.7157 40 1 4.4053 -1.3711 -0.0102 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291770227.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:42 Heat of formation + Delta-G solvation = 34.810757 kcal Electronic energy + Delta-G solvation = -21593.353386 eV Core-core repulsion = 18409.537303 eV Total energy + Delta-G solvation = -3183.816083 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.26324 -39.49875 -37.12944 -33.74859 -33.28489 -31.78112 -31.05051 -30.36598 -28.30132 -26.21125 -25.30735 -23.28098 -21.70563 -21.48523 -21.00577 -20.05981 -18.54202 -17.10935 -16.69150 -16.22761 -15.87113 -15.40416 -14.82272 -14.47175 -14.16591 -13.74530 -13.66218 -13.40762 -13.04406 -12.97203 -12.75696 -12.69942 -12.38854 -11.97039 -11.83818 -11.46533 -11.40708 -11.24493 -10.99566 -10.77759 -10.49689 -10.08878 -10.03848 -9.86744 -9.34370 -9.18429 -8.51857 -8.45513 -8.23799 -8.16717 -6.27320 -3.96891 1.93891 2.55265 2.81765 3.28630 3.41857 3.48149 3.52043 3.67463 4.45323 4.51497 4.59571 4.63575 4.81241 4.87481 5.00789 5.11468 5.25453 5.27222 5.30987 5.38646 5.50552 5.57538 5.65993 5.67753 5.74037 5.77986 5.95252 6.02845 6.17650 6.20535 6.23597 6.63669 6.69575 6.84197 7.03432 7.58530 7.63998 7.75388 7.93173 8.25703 8.55412 8.79490 8.97798 9.76859 11.13643 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018968 B = 0.004449 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.832590 B = 6292.380612 C = 7337.965470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.379 5.379 3 C 0.064 3.936 4 C -0.231 4.231 5 C 0.215 3.785 6 H 0.074 0.926 7 C -0.121 4.121 8 C -0.133 4.133 9 C 0.101 3.899 10 N -0.623 5.623 11 C 0.526 3.474 12 O -0.529 6.529 13 C -0.117 4.117 14 C 0.025 3.975 15 C -0.607 4.607 16 H 0.049 0.951 17 C 0.015 3.985 18 N -0.912 5.912 19 Si 1.073 2.927 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.285 1.285 23 C 0.069 3.931 24 N -0.300 5.300 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.170 0.830 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.013 0.987 38 H 0.013 0.987 39 H 0.272 0.728 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.766 4.738 22.106 23.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.161 5.161 3 C -0.082 4.082 4 C -0.244 4.244 5 C 0.110 3.890 6 H 0.092 0.908 7 C -0.159 4.159 8 C -0.171 4.171 9 C -0.023 4.023 10 N -0.360 5.360 11 C 0.317 3.683 12 O -0.403 6.403 13 C -0.157 4.157 14 C -0.012 4.012 15 C -0.645 4.645 16 H 0.067 0.933 17 C -0.189 4.189 18 N -0.548 5.548 19 Si 0.901 3.099 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.210 1.210 23 C -0.118 4.118 24 N -0.121 5.121 25 H 0.092 0.908 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.187 0.813 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.032 0.968 38 H 0.031 0.969 39 H 0.083 0.917 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -5.851 3.413 20.155 21.263 hybrid contribution 0.023 1.146 1.531 1.912 sum -5.828 4.560 21.686 22.913 Atomic orbital electron populations 1.21800 0.74513 1.04034 1.03388 1.48377 1.06452 1.03873 1.57440 1.22159 0.90742 0.93203 1.02108 1.20195 0.94166 0.94201 1.15800 1.19591 0.85238 0.94766 0.89434 0.90837 1.22678 0.95026 1.02842 0.95355 1.22828 0.96232 1.00337 0.97720 1.22311 0.89091 0.98730 0.92146 1.48779 1.15298 1.64807 1.07094 1.21214 0.90049 0.77387 0.79642 1.90657 1.30381 1.50471 1.68806 1.21695 0.95148 1.00210 0.98635 1.19009 0.96942 0.97118 0.88180 1.22059 1.00866 1.45965 0.95616 0.93257 1.25843 1.01468 0.95930 0.95705 1.70702 1.04569 1.39774 1.39782 0.83508 0.74337 0.76224 0.75832 1.21505 1.21502 1.21033 1.23539 0.94844 0.94483 0.98889 1.77326 1.01701 1.08164 1.24903 0.90821 0.89511 0.89709 0.81267 0.90358 0.90477 0.90580 0.90024 0.91597 0.90277 0.90328 0.90305 0.96843 0.96863 0.91744 0.80832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.90 11.47 59.85 0.69 1.59 16 2 N -0.38 -5.14 4.01 -68.16 -0.27 -5.42 16 3 C 0.06 0.84 11.40 -17.22 -0.20 0.64 16 4 C -0.23 -3.33 4.18 -105.05 -0.44 -3.77 16 5 C 0.21 2.80 3.28 -68.10 -0.22 2.57 16 6 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 7 C -0.12 -1.08 6.47 -24.89 -0.16 -1.24 16 8 C -0.13 -1.09 7.10 -24.46 -0.17 -1.27 16 9 C 0.10 1.12 6.70 -2.41 -0.02 1.10 16 10 N -0.62 -9.46 2.82 -164.19 -0.46 -9.92 16 11 C 0.53 10.74 7.64 -10.98 -0.08 10.66 16 12 O -0.53 -13.01 15.81 5.56 0.09 -12.92 16 13 C -0.12 -2.52 4.64 -27.88 -0.13 -2.65 16 14 C 0.03 0.70 3.57 -27.89 -0.10 0.60 16 15 C -0.61 -17.88 9.11 -34.44 -0.31 -18.20 16 16 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 17 C 0.01 0.44 5.46 -17.82 -0.10 0.34 16 18 N -0.91 -29.50 13.65 55.43 0.76 -28.74 16 19 Si 1.07 26.00 29.90 -169.99 -5.08 20.92 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 C 0.07 1.08 11.68 -17.37 -0.20 0.88 16 24 N -0.30 -4.91 12.58 30.62 0.39 -4.52 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.17 1.63 8.06 -52.49 -0.42 1.20 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.69 7.85 -51.93 -0.41 0.28 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.86 7.48 -51.93 -0.39 0.48 16 35 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.08 1.57 7.85 -51.93 -0.41 1.16 16 37 H 0.01 0.40 7.97 -51.93 -0.41 -0.01 16 38 H 0.01 0.40 7.96 -51.93 -0.41 -0.02 16 39 H 0.27 8.97 7.22 -40.82 -0.29 8.68 16 40 H 0.17 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 336.26 15.07 5.07 5.07 Total: -1.00 -38.33 336.26 -7.15 -45.48 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -6.18 Total: -1.20 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -1.45 Total: -8.74 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 0.40 Total: -48.61 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.92 kcal Atomic # 14 Polarization: 26.00 SS G_CDS: -5.08 Total: 20.92 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -38.33 -7.15 -45.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291770227.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.293 kcal (2) G-P(sol) polarization free energy of solvation -38.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds