Wall clock time and date at job start Mon Mar 30 2020 01:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34950 * 126.03640 * 2 1 4 4 C 1.35318 * 107.74108 * 179.97438 * 3 2 1 5 5 C 1.50706 * 126.03836 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.87050 * 341.01688 * 5 4 3 7 7 C 1.54323 * 110.00895 * 102.11167 * 5 4 3 8 8 C 1.55161 * 102.93784 * 141.68475 * 7 5 4 9 9 C 1.55128 * 101.48565 * 324.32982 * 8 7 5 10 10 N 1.47022 * 109.88116 * 219.99847 * 5 4 3 11 11 C 1.34777 * 125.64585 * 61.45298 * 10 5 4 12 12 O 1.21278 * 120.00348 * 359.97438 * 11 10 5 13 13 C 1.50703 * 119.99618 * 179.97438 * 11 10 5 14 14 C 1.52999 * 109.47244 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47057 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00538 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99661 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00186 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00030 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47297 * 89.99863 * 19 17 15 21 21 H 1.48503 * 109.47261 * 330.00044 * 19 17 15 22 22 H 1.48500 * 109.47454 * 210.00037 * 19 17 15 23 23 C 1.39863 * 107.92394 * 0.25878 * 4 3 2 24 24 N 1.30840 * 108.20134 * 359.55754 * 23 4 3 25 25 H 1.09000 * 109.47353 * 89.99861 * 1 2 3 26 26 H 1.08998 * 109.47576 * 210.00429 * 1 2 3 27 27 H 1.09007 * 109.46940 * 330.00044 * 1 2 3 28 28 H 1.07991 * 126.12907 * 359.95491 * 3 2 1 29 29 H 1.09001 * 110.71852 * 260.04396 * 7 5 4 30 30 H 1.08990 * 110.72194 * 23.32254 * 7 5 4 31 31 H 1.08999 * 111.00389 * 82.57161 * 8 7 5 32 32 H 1.09003 * 111.00266 * 206.41824 * 8 7 5 33 33 H 1.08995 * 110.49722 * 278.45224 * 9 8 7 34 34 H 1.08998 * 110.34057 * 156.06218 * 9 8 7 35 35 H 1.09002 * 109.47387 * 59.99847 * 13 11 10 36 36 H 1.08998 * 109.46985 * 299.99880 * 13 11 10 37 37 H 1.09002 * 109.46997 * 59.99677 * 14 13 11 38 38 H 1.09000 * 109.46625 * 300.00102 * 14 13 11 39 39 H 0.97001 * 119.99697 * 359.97438 * 18 17 15 40 40 H 1.08001 * 125.90116 * 179.73242 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6665 0.0006 5 6 4.7681 1.5452 0.0002 6 1 4.5039 2.5485 -0.3340 7 6 5.3741 1.6069 1.4181 8 6 6.9013 1.5949 1.1440 9 6 6.9868 0.6540 -0.0864 10 7 5.7920 0.9756 -0.8878 11 6 5.6583 0.7754 -2.2139 12 8 4.6231 1.0737 -2.7709 13 6 6.7952 0.1808 -3.0045 14 6 6.3863 0.0601 -4.4739 15 6 7.5229 -0.5350 -5.2643 16 1 8.4449 -0.8002 -4.7685 17 6 7.3857 -0.7410 -6.6208 18 7 6.2628 -0.4185 -7.2246 19 14 8.7949 -1.4780 -7.6008 20 1 8.6675 -2.9575 -7.6149 21 1 10.0862 -1.0983 -6.9732 22 1 8.7514 -0.9642 -8.9934 23 6 3.5346 -0.7321 -0.0051 24 7 2.2891 -1.1328 0.0007 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5139 28 1 1.9282 2.1193 -0.0007 29 1 5.0803 2.5269 1.9234 30 1 5.0802 0.7344 2.0015 31 1 7.2626 2.5943 0.9017 32 1 7.4470 1.1785 1.9908 33 1 6.9630 -0.3892 0.2284 34 1 7.8927 0.8582 -0.6572 35 1 7.0332 -0.8077 -2.6116 36 1 7.6707 0.8249 -2.9224 37 1 6.1480 1.0484 -4.8671 38 1 5.5109 -0.5842 -4.5556 39 1 5.5309 -0.0361 -6.7157 40 1 4.4053 -1.3711 -0.0102 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291770227.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:42 Heat of formation + Delta-G solvation = 8.624869 kcal Electronic energy + Delta-G solvation = -21594.488891 eV Core-core repulsion = 18409.537303 eV Total energy + Delta-G solvation = -3184.951588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.32774 -40.82914 -38.44697 -35.94912 -34.26664 -33.28865 -32.10425 -32.02589 -29.23560 -27.30958 -27.11575 -24.81979 -23.40232 -22.40219 -22.01756 -21.25654 -19.83449 -19.06234 -17.99925 -17.53656 -17.16670 -16.37624 -16.34007 -15.80417 -15.61745 -15.36256 -14.80092 -14.51249 -14.42123 -14.25148 -13.85748 -13.70537 -13.58582 -13.55017 -13.30242 -13.01127 -12.68098 -12.28590 -12.20326 -12.05601 -11.92761 -11.82843 -11.81008 -11.45390 -10.92472 -10.65098 -10.56992 -10.41317 -9.71407 -9.26362 -8.71302 -6.42882 0.89302 1.53134 1.60009 1.64331 1.69493 1.74994 1.81223 2.17521 2.59255 3.15846 3.57085 3.64905 3.75572 3.93553 4.05271 4.14354 4.25781 4.32102 4.34732 4.35708 4.37037 4.40303 4.60972 4.62528 4.78560 4.79343 4.90948 5.01096 5.04138 5.12226 5.18549 5.26518 5.35368 5.44210 5.56430 5.60233 5.92225 6.10882 6.15323 6.49238 6.57096 6.66720 7.28006 7.43754 8.68295 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018968 B = 0.004449 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.832590 B = 6292.380612 C = 7337.965470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.381 5.381 3 C 0.063 3.937 4 C -0.249 4.249 5 C 0.208 3.792 6 H 0.067 0.933 7 C -0.108 4.108 8 C -0.120 4.120 9 C 0.086 3.914 10 N -0.612 5.612 11 C 0.524 3.476 12 O -0.585 6.585 13 C -0.106 4.106 14 C 0.031 3.969 15 C -0.618 4.618 16 H 0.067 0.933 17 C -0.046 4.046 18 N -0.940 5.940 19 Si 1.128 2.872 20 H -0.272 1.272 21 H -0.258 1.258 22 H -0.285 1.285 23 C 0.051 3.949 24 N -0.339 5.339 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.122 0.878 28 H 0.204 0.796 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.100 0.900 37 H -0.022 1.022 38 H -0.028 1.028 39 H 0.249 0.751 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.963 5.187 24.469 25.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.164 5.164 3 C -0.084 4.084 4 C -0.261 4.261 5 C 0.104 3.896 6 H 0.086 0.914 7 C -0.146 4.146 8 C -0.157 4.157 9 C -0.036 4.036 10 N -0.346 5.346 11 C 0.315 3.685 12 O -0.465 6.465 13 C -0.145 4.145 14 C -0.007 4.007 15 C -0.655 4.655 16 H 0.086 0.914 17 C -0.242 4.242 18 N -0.577 5.577 19 Si 0.947 3.053 20 H -0.197 1.197 21 H -0.182 1.182 22 H -0.211 1.211 23 C -0.134 4.134 24 N -0.161 5.161 25 H 0.091 0.909 26 H 0.112 0.888 27 H 0.140 0.860 28 H 0.220 0.780 29 H 0.121 0.879 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.130 0.870 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.118 0.882 37 H -0.004 1.004 38 H -0.010 1.010 39 H 0.059 0.941 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -4.029 3.861 22.616 23.295 hybrid contribution -0.622 1.036 0.867 1.487 sum -4.651 4.897 23.483 24.435 Atomic orbital electron populations 1.22177 0.72056 1.06306 1.04030 1.48769 1.07929 1.03278 1.56389 1.22752 0.90492 0.94504 1.00656 1.20430 0.95357 0.93821 1.16519 1.19900 0.84671 0.93821 0.91243 0.91446 1.22651 0.95170 1.04275 0.92457 1.22833 0.95865 1.00046 0.96998 1.22722 0.87371 1.00503 0.92963 1.48672 1.17427 1.62759 1.05750 1.20853 0.88791 0.77412 0.81475 1.90629 1.32070 1.53245 1.70566 1.21452 0.96365 1.01921 0.94812 1.18822 0.95245 0.94024 0.92574 1.22516 1.01632 1.45189 0.96171 0.91433 1.27722 1.03103 0.95515 0.97856 1.70873 1.05284 1.41840 1.39734 0.82842 0.71946 0.76199 0.74273 1.19740 1.18226 1.21093 1.23670 0.94890 0.95379 0.99509 1.77221 1.02433 1.10118 1.26358 0.90928 0.88823 0.85955 0.77967 0.87889 0.90162 0.89936 0.87007 0.90305 0.89818 0.88650 0.88158 1.00390 1.00962 0.94135 0.80884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.52 11.47 127.77 1.47 2.99 16 2 N -0.38 -10.18 4.01 -369.57 -1.48 -11.67 16 3 C 0.06 1.60 11.40 83.54 0.95 2.55 16 4 C -0.25 -7.07 4.18 -20.14 -0.08 -7.15 16 5 C 0.21 5.14 3.28 44.60 0.15 5.29 16 6 H 0.07 1.75 8.14 -2.38 -0.02 1.74 16 7 C -0.11 -1.57 6.47 31.78 0.21 -1.37 16 8 C -0.12 -1.49 7.10 32.06 0.23 -1.26 16 9 C 0.09 1.69 6.70 86.93 0.58 2.27 16 10 N -0.61 -18.09 2.82 -791.75 -2.23 -20.32 16 11 C 0.52 21.89 7.64 87.66 0.67 22.56 16 12 O -0.59 -30.34 15.81 -3.02 -0.05 -30.39 16 13 C -0.11 -4.59 4.64 29.85 0.14 -4.45 16 14 C 0.03 1.80 3.57 29.85 0.11 1.91 16 15 C -0.62 -36.78 9.11 25.60 0.23 -36.54 16 16 H 0.07 3.71 7.74 -2.91 -0.02 3.68 16 17 C -0.05 -2.78 5.46 84.65 0.46 -2.32 16 18 N -0.94 -62.98 13.65 21.45 0.29 -62.69 16 19 Si 1.13 51.56 29.90 68.60 2.05 53.61 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 22 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 23 C 0.05 1.63 11.68 85.23 1.00 2.62 16 24 N -0.34 -11.33 12.58 -57.03 -0.72 -12.05 16 25 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.12 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.20 3.47 8.06 -2.92 -0.02 3.45 16 29 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 1.18 7.85 -2.39 -0.02 1.16 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.08 1.59 7.48 -2.39 -0.02 1.57 16 35 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 36 H 0.10 3.88 7.85 -2.39 -0.02 3.86 16 37 H -0.02 -1.44 7.97 -2.39 -0.02 -1.46 16 38 H -0.03 -1.84 7.96 -2.39 -0.02 -1.86 16 39 H 0.25 17.50 7.22 -92.71 -0.67 16.84 16 40 H 0.17 5.19 8.06 -2.91 -0.02 5.17 16 Total: -1.00 -88.87 336.26 5.08 -83.79 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 1.11 Total: 12.63 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: 6.10 Total: -12.92 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -4.14 Total: -106.73 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.05 Total: -30.39 kcal Atomic # 14 Polarization: 51.56 SS G_CDS: 2.05 Total: 53.61 kcal Total: -88.87 5.08 -83.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291770227.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.417 kcal (2) G-P(sol) polarization free energy of solvation -88.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds