Wall clock time and date at job start Mon Mar 30 2020 01:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34942 * 126.04175 * 2 1 4 4 C 1.35316 * 107.74968 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.03993 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.87193 * 18.98978 * 5 4 3 7 7 C 1.54327 * 110.01135 * 257.89081 * 5 4 3 8 8 C 1.55157 * 102.93958 * 218.32224 * 7 5 4 9 9 C 1.54683 * 101.68266 * 35.33341 * 8 7 5 10 10 N 1.47026 * 109.87847 * 140.00821 * 5 4 3 11 11 C 1.34777 * 125.64597 * 298.46964 * 10 5 4 12 12 O 1.21274 * 120.00145 * 0.02562 * 11 10 5 13 13 C 1.50696 * 119.99735 * 180.02562 * 11 10 5 14 14 C 1.52998 * 109.46973 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.47348 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99758 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00102 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47057 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 300.00068 * 19 17 15 22 22 H 1.48504 * 109.47102 * 60.00417 * 19 17 15 23 23 C 1.39876 * 107.91874 * 0.26798 * 4 3 2 24 24 N 1.30839 * 108.19727 * 359.55317 * 23 4 3 25 25 H 1.08998 * 109.47748 * 89.99762 * 1 2 3 26 26 H 1.08999 * 109.47347 * 209.99548 * 1 2 3 27 27 H 1.09005 * 109.47089 * 329.99470 * 1 2 3 28 28 H 1.08001 * 126.12769 * 0.04979 * 3 2 1 29 29 H 1.09001 * 110.71806 * 336.68164 * 7 5 4 30 30 H 1.08989 * 110.71804 * 99.95595 * 7 5 4 31 31 H 1.09000 * 111.00536 * 153.57707 * 8 7 5 32 32 H 1.09004 * 111.00096 * 277.38836 * 8 7 5 33 33 H 1.08999 * 110.39635 * 204.36683 * 9 8 7 34 34 H 1.08999 * 110.23698 * 82.11144 * 9 8 7 35 35 H 1.09000 * 109.47333 * 60.00571 * 13 11 10 36 36 H 1.09002 * 109.47152 * 300.00044 * 13 11 10 37 37 H 1.09001 * 109.47671 * 60.00215 * 14 13 11 38 38 H 1.09006 * 109.47297 * 299.99934 * 14 13 11 39 39 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 40 40 H 1.07998 * 125.89772 * 179.73110 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2589 1.0911 0.0000 4 6 3.5437 0.6664 -0.0006 5 6 4.7680 1.5452 -0.0002 6 1 4.5039 2.5484 0.3341 7 6 5.3741 1.6069 -1.4182 8 6 6.9012 1.5948 -1.1441 9 6 6.9908 0.6641 0.0882 10 7 5.7920 0.9755 0.8877 11 6 5.6589 0.7764 2.2141 12 8 4.6242 1.0760 2.7714 13 6 6.7957 0.1816 3.0045 14 6 6.3874 0.0625 4.4742 15 6 7.5244 -0.5318 5.2649 16 1 8.4460 -0.7983 4.7687 17 6 7.3883 -0.7353 6.6217 18 7 6.2660 -0.4113 7.2259 19 14 8.7975 -1.4725 7.6016 20 1 8.4017 -1.5869 9.0283 21 1 9.1202 -2.8200 7.0673 22 1 9.9910 -0.5961 7.4883 23 6 3.5345 -0.7323 -0.0072 24 7 2.2890 -1.1328 -0.0007 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5139 28 1 1.9282 2.1193 0.0008 29 1 5.0801 0.7344 -2.0016 30 1 5.0802 2.5269 -1.9234 31 1 7.4468 1.1784 -1.9908 32 1 7.2627 2.5943 -0.9024 33 1 7.8940 0.8770 0.6601 34 1 6.9768 -0.3796 -0.2257 35 1 7.6717 0.8249 2.9215 36 1 7.0326 -0.8074 2.6123 37 1 5.5115 -0.5810 4.5571 38 1 6.1502 1.0513 4.8668 39 1 5.5341 -0.0288 6.7170 40 1 4.4052 -1.3712 -0.0133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291770229.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:44 Heat of formation + Delta-G solvation = 34.730659 kcal Electronic energy + Delta-G solvation = -21591.205297 eV Core-core repulsion = 18407.385741 eV Total energy + Delta-G solvation = -3183.819556 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.26413 -39.50479 -37.13858 -33.74890 -33.28876 -31.78104 -31.06488 -30.36657 -28.31262 -26.21430 -25.30722 -23.27848 -21.70001 -21.48990 -21.00538 -20.05952 -18.54326 -17.11044 -16.69507 -16.23316 -15.87211 -15.40798 -14.82034 -14.46224 -14.17451 -13.76488 -13.65490 -13.40380 -13.04236 -12.94060 -12.75939 -12.73008 -12.38994 -11.97119 -11.84154 -11.46638 -11.40461 -11.25544 -10.99074 -10.78345 -10.49438 -10.09497 -10.03888 -9.84988 -9.34795 -9.18409 -8.51807 -8.45317 -8.24128 -8.16953 -6.27212 -3.96829 1.93757 2.55039 2.81968 3.28683 3.41650 3.48296 3.50773 3.69453 4.46565 4.51591 4.60149 4.64080 4.81293 4.87005 4.99331 5.11224 5.24939 5.27010 5.31464 5.38736 5.50613 5.57575 5.66008 5.67716 5.73997 5.78117 5.95153 6.02767 6.17673 6.20534 6.23421 6.63641 6.69539 6.84154 7.03436 7.58385 7.64012 7.75354 7.93149 8.25501 8.54995 8.79484 8.97670 9.76900 11.13671 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018965 B = 0.004447 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.038444 B = 6295.289160 C = 7340.785750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.379 5.379 3 C 0.064 3.936 4 C -0.231 4.231 5 C 0.215 3.785 6 H 0.074 0.926 7 C -0.121 4.121 8 C -0.133 4.133 9 C 0.101 3.899 10 N -0.623 5.623 11 C 0.527 3.473 12 O -0.529 6.529 13 C -0.117 4.117 14 C 0.025 3.975 15 C -0.607 4.607 16 H 0.049 0.951 17 C 0.015 3.985 18 N -0.912 5.912 19 Si 1.070 2.930 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.288 1.288 23 C 0.069 3.931 24 N -0.300 5.300 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.170 0.830 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.013 0.987 38 H 0.013 0.987 39 H 0.272 0.728 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.781 4.719 -21.983 22.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.161 5.161 3 C -0.082 4.082 4 C -0.243 4.243 5 C 0.110 3.890 6 H 0.092 0.908 7 C -0.159 4.159 8 C -0.171 4.171 9 C -0.023 4.023 10 N -0.360 5.360 11 C 0.317 3.683 12 O -0.403 6.403 13 C -0.157 4.157 14 C -0.012 4.012 15 C -0.645 4.645 16 H 0.067 0.933 17 C -0.189 4.189 18 N -0.547 5.547 19 Si 0.898 3.102 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.215 1.215 23 C -0.118 4.118 24 N -0.121 5.121 25 H 0.090 0.910 26 H 0.106 0.894 27 H 0.104 0.896 28 H 0.187 0.813 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.031 0.969 38 H 0.031 0.969 39 H 0.082 0.918 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -5.872 3.388 -20.019 21.135 hybrid contribution 0.044 1.167 -1.573 1.959 sum -5.828 4.554 -21.592 22.824 Atomic orbital electron populations 1.21794 0.74511 1.04511 1.02888 1.48371 1.06451 1.03866 1.57459 1.22160 0.90744 0.93210 1.02099 1.20187 0.94152 0.94198 1.15779 1.19590 0.85254 0.94760 0.89434 0.90847 1.22678 0.94995 1.02852 0.95363 1.22753 0.96260 1.00428 0.97707 1.22219 0.89008 0.98869 0.92165 1.48777 1.15050 1.64998 1.07138 1.21208 0.90050 0.77396 0.79620 1.90656 1.30432 1.50458 1.68771 1.21694 0.95146 1.00215 0.98635 1.19008 0.96935 0.97119 0.88169 1.22033 1.00863 1.46044 0.95590 0.93305 1.25838 1.01460 0.95934 0.95697 1.70732 1.04570 1.39692 1.39750 0.83545 0.74433 0.76053 0.76159 1.20801 1.21476 1.21483 1.23545 0.94844 0.94481 0.98907 1.77326 1.01713 1.08181 1.24857 0.91043 0.89406 0.89644 0.81268 0.90472 0.90344 0.89975 0.90639 0.90279 0.91640 0.90309 0.90321 0.96854 0.96852 0.91781 0.80822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.90 11.47 59.84 0.69 1.59 16 2 N -0.38 -5.14 4.01 -68.17 -0.27 -5.42 16 3 C 0.06 0.84 11.40 -17.23 -0.20 0.64 16 4 C -0.23 -3.32 4.18 -105.05 -0.44 -3.76 16 5 C 0.21 2.80 3.28 -68.10 -0.22 2.57 16 6 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 7 C -0.12 -1.08 6.47 -24.89 -0.16 -1.24 16 8 C -0.13 -1.10 7.07 -24.70 -0.17 -1.27 16 9 C 0.10 1.12 6.68 -2.65 -0.02 1.10 16 10 N -0.62 -9.46 2.83 -164.46 -0.47 -9.93 16 11 C 0.53 10.75 7.64 -10.99 -0.08 10.66 16 12 O -0.53 -13.01 15.81 5.56 0.09 -12.92 16 13 C -0.12 -2.52 4.65 -27.89 -0.13 -2.65 16 14 C 0.03 0.70 3.57 -27.88 -0.10 0.60 16 15 C -0.61 -17.89 9.11 -34.44 -0.31 -18.20 16 16 H 0.05 1.37 7.74 -52.48 -0.41 0.96 16 17 C 0.01 0.45 5.46 -17.82 -0.10 0.35 16 18 N -0.91 -29.46 13.65 55.43 0.76 -28.71 16 19 Si 1.07 25.93 29.90 -169.99 -5.08 20.84 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 23 C 0.07 1.08 11.69 -17.36 -0.20 0.87 16 24 N -0.30 -4.91 12.58 30.63 0.39 -4.52 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.17 1.63 8.06 -52.49 -0.42 1.20 16 29 H 0.08 0.69 7.85 -51.93 -0.41 0.28 16 30 H 0.08 0.57 8.14 -51.94 -0.42 0.15 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.86 7.48 -51.93 -0.39 0.48 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 1.56 7.84 -51.93 -0.41 1.16 16 36 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 37 H 0.01 0.40 7.97 -51.93 -0.41 -0.01 16 38 H 0.01 0.40 7.97 -51.93 -0.41 -0.02 16 39 H 0.27 8.96 7.22 -40.82 -0.29 8.66 16 40 H 0.17 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 336.24 15.07 5.07 5.07 Total: -1.00 -38.31 336.24 -7.16 -45.47 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -6.18 Total: -1.16 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -1.45 Total: -8.73 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.40 Total: -48.57 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.92 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -5.08 Total: 20.84 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -38.31 -7.16 -45.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291770229.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.199 kcal (2) G-P(sol) polarization free energy of solvation -38.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds