Wall clock time and date at job start Mon Mar 30 2020 01:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34942 * 126.04175 * 2 1 4 4 C 1.35316 * 107.74968 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.03993 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.87193 * 18.98978 * 5 4 3 7 7 C 1.54327 * 110.01135 * 257.89081 * 5 4 3 8 8 C 1.55157 * 102.93958 * 218.32224 * 7 5 4 9 9 C 1.54683 * 101.68266 * 35.33341 * 8 7 5 10 10 N 1.47026 * 109.87847 * 140.00821 * 5 4 3 11 11 C 1.34777 * 125.64597 * 298.46964 * 10 5 4 12 12 O 1.21274 * 120.00145 * 0.02562 * 11 10 5 13 13 C 1.50696 * 119.99735 * 180.02562 * 11 10 5 14 14 C 1.52998 * 109.46973 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.47348 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99758 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00102 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47057 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 300.00068 * 19 17 15 22 22 H 1.48504 * 109.47102 * 60.00417 * 19 17 15 23 23 C 1.39876 * 107.91874 * 0.26798 * 4 3 2 24 24 N 1.30839 * 108.19727 * 359.55317 * 23 4 3 25 25 H 1.08998 * 109.47748 * 89.99762 * 1 2 3 26 26 H 1.08999 * 109.47347 * 209.99548 * 1 2 3 27 27 H 1.09005 * 109.47089 * 329.99470 * 1 2 3 28 28 H 1.08001 * 126.12769 * 0.04979 * 3 2 1 29 29 H 1.09001 * 110.71806 * 336.68164 * 7 5 4 30 30 H 1.08989 * 110.71804 * 99.95595 * 7 5 4 31 31 H 1.09000 * 111.00536 * 153.57707 * 8 7 5 32 32 H 1.09004 * 111.00096 * 277.38836 * 8 7 5 33 33 H 1.08999 * 110.39635 * 204.36683 * 9 8 7 34 34 H 1.08999 * 110.23698 * 82.11144 * 9 8 7 35 35 H 1.09000 * 109.47333 * 60.00571 * 13 11 10 36 36 H 1.09002 * 109.47152 * 300.00044 * 13 11 10 37 37 H 1.09001 * 109.47671 * 60.00215 * 14 13 11 38 38 H 1.09006 * 109.47297 * 299.99934 * 14 13 11 39 39 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 40 40 H 1.07998 * 125.89772 * 179.73110 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2589 1.0911 0.0000 4 6 3.5437 0.6664 -0.0006 5 6 4.7680 1.5452 -0.0002 6 1 4.5039 2.5484 0.3341 7 6 5.3741 1.6069 -1.4182 8 6 6.9012 1.5948 -1.1441 9 6 6.9908 0.6641 0.0882 10 7 5.7920 0.9755 0.8877 11 6 5.6589 0.7764 2.2141 12 8 4.6242 1.0760 2.7714 13 6 6.7957 0.1816 3.0045 14 6 6.3874 0.0625 4.4742 15 6 7.5244 -0.5318 5.2649 16 1 8.4460 -0.7983 4.7687 17 6 7.3883 -0.7353 6.6217 18 7 6.2660 -0.4113 7.2259 19 14 8.7975 -1.4725 7.6016 20 1 8.4017 -1.5869 9.0283 21 1 9.1202 -2.8200 7.0673 22 1 9.9910 -0.5961 7.4883 23 6 3.5345 -0.7323 -0.0072 24 7 2.2890 -1.1328 -0.0007 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5139 28 1 1.9282 2.1193 0.0008 29 1 5.0801 0.7344 -2.0016 30 1 5.0802 2.5269 -1.9234 31 1 7.4468 1.1784 -1.9908 32 1 7.2627 2.5943 -0.9024 33 1 7.8940 0.8770 0.6601 34 1 6.9768 -0.3796 -0.2257 35 1 7.6717 0.8249 2.9215 36 1 7.0326 -0.8074 2.6123 37 1 5.5115 -0.5810 4.5571 38 1 6.1502 1.0513 4.8668 39 1 5.5341 -0.0288 6.7170 40 1 4.4052 -1.3712 -0.0133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291770229.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:43 Heat of formation + Delta-G solvation = 8.568830 kcal Electronic energy + Delta-G solvation = -21592.339759 eV Core-core repulsion = 18407.385741 eV Total energy + Delta-G solvation = -3184.954018 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.32741 -40.83256 -38.45619 -35.94743 -34.26983 -33.28779 -32.11005 -32.03385 -29.24649 -27.30790 -27.11748 -24.81744 -23.39782 -22.40626 -22.01593 -21.25434 -19.83485 -19.06122 -17.99948 -17.54079 -17.16729 -16.36614 -16.34202 -15.80525 -15.60855 -15.36005 -14.80410 -14.52421 -14.42057 -14.25637 -13.85204 -13.70771 -13.58240 -13.55381 -13.30677 -13.00920 -12.65922 -12.28919 -12.21378 -12.05188 -11.95371 -11.82779 -11.81045 -11.44640 -10.92473 -10.65053 -10.56182 -10.41097 -9.70937 -9.26260 -8.70988 -6.42665 0.89555 1.53391 1.59557 1.64077 1.70459 1.74604 1.82471 2.17534 2.59772 3.16001 3.56386 3.64580 3.76577 3.93394 4.05203 4.13515 4.25293 4.32201 4.34961 4.36211 4.38381 4.40239 4.60898 4.63013 4.78170 4.79417 4.91050 5.00993 5.04112 5.12294 5.18558 5.26565 5.35520 5.43946 5.56403 5.60419 5.92342 6.10882 6.15240 6.49265 6.57143 6.66827 7.28092 7.44022 8.68545 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018965 B = 0.004447 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.038444 B = 6295.289160 C = 7340.785750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.381 5.381 3 C 0.063 3.937 4 C -0.249 4.249 5 C 0.208 3.792 6 H 0.067 0.933 7 C -0.107 4.107 8 C -0.120 4.120 9 C 0.086 3.914 10 N -0.612 5.612 11 C 0.525 3.475 12 O -0.585 6.585 13 C -0.106 4.106 14 C 0.031 3.969 15 C -0.618 4.618 16 H 0.068 0.932 17 C -0.045 4.045 18 N -0.939 5.939 19 Si 1.125 2.875 20 H -0.287 1.287 21 H -0.264 1.264 22 H -0.261 1.261 23 C 0.051 3.949 24 N -0.339 5.339 25 H 0.096 0.904 26 H 0.082 0.918 27 H 0.109 0.891 28 H 0.203 0.797 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.095 0.905 37 H -0.028 1.028 38 H -0.022 1.022 39 H 0.249 0.751 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.953 5.167 -24.315 25.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.164 5.164 3 C -0.084 4.084 4 C -0.261 4.261 5 C 0.104 3.896 6 H 0.085 0.915 7 C -0.145 4.145 8 C -0.158 4.158 9 C -0.035 4.035 10 N -0.346 5.346 11 C 0.315 3.685 12 O -0.465 6.465 13 C -0.145 4.145 14 C -0.006 4.006 15 C -0.656 4.656 16 H 0.086 0.914 17 C -0.242 4.242 18 N -0.577 5.577 19 Si 0.945 3.055 20 H -0.213 1.213 21 H -0.189 1.189 22 H -0.186 1.186 23 C -0.134 4.134 24 N -0.161 5.161 25 H 0.115 0.885 26 H 0.101 0.899 27 H 0.127 0.873 28 H 0.220 0.780 29 H 0.098 0.902 30 H 0.121 0.879 31 H 0.130 0.870 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.119 0.881 36 H 0.113 0.887 37 H -0.010 1.010 38 H -0.004 1.004 39 H 0.058 0.942 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -4.023 3.837 -22.451 23.129 hybrid contribution -0.611 1.055 -0.923 1.529 sum -4.634 4.892 -23.374 24.326 Atomic orbital electron populations 1.22170 0.72060 1.05480 1.04859 1.48764 1.07929 1.03280 1.56392 1.22744 0.90493 0.94497 1.00687 1.20422 0.95335 0.93833 1.16521 1.19898 0.84689 0.93816 0.91237 0.91460 1.22651 0.95150 1.04276 0.92472 1.22759 0.95883 1.00156 0.96988 1.22629 0.87278 1.00639 0.92989 1.48671 1.17199 1.62942 1.05789 1.20848 0.88796 0.77427 0.81447 1.90627 1.32117 1.53223 1.70529 1.21451 0.96369 1.01918 0.94809 1.18821 0.95240 0.94023 0.92563 1.22497 1.01650 1.45283 0.96154 0.91426 1.27720 1.03097 0.95509 0.97849 1.70901 1.05294 1.41768 1.39708 0.82872 0.71682 0.76759 0.74211 1.21291 1.18886 1.18608 1.23679 0.94888 0.95362 0.99519 1.77222 1.02450 1.10109 1.26345 0.88531 0.89898 0.87256 0.78003 0.90158 0.87893 0.86955 0.89996 0.89810 0.90343 0.88147 0.88662 1.00953 1.00403 0.94170 0.80837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.52 11.47 127.77 1.47 2.99 16 2 N -0.38 -10.18 4.01 -369.59 -1.48 -11.67 16 3 C 0.06 1.59 11.40 83.54 0.95 2.55 16 4 C -0.25 -7.07 4.18 -20.14 -0.08 -7.15 16 5 C 0.21 5.15 3.28 44.60 0.15 5.29 16 6 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 7 C -0.11 -1.58 6.47 31.78 0.21 -1.37 16 8 C -0.12 -1.50 7.07 31.91 0.23 -1.27 16 9 C 0.09 1.69 6.68 86.78 0.58 2.27 16 10 N -0.61 -18.09 2.83 -792.63 -2.25 -20.33 16 11 C 0.52 21.89 7.64 87.66 0.67 22.56 16 12 O -0.59 -30.31 15.81 -3.01 -0.05 -30.36 16 13 C -0.11 -4.59 4.65 29.85 0.14 -4.45 16 14 C 0.03 1.81 3.57 29.85 0.11 1.92 16 15 C -0.62 -36.81 9.11 25.60 0.23 -36.57 16 16 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 17 C -0.05 -2.77 5.46 84.65 0.46 -2.30 16 18 N -0.94 -62.94 13.65 21.45 0.29 -62.65 16 19 Si 1.13 51.41 29.90 68.60 2.05 53.46 16 20 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 22 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 23 C 0.05 1.62 11.69 85.24 1.00 2.62 16 24 N -0.34 -11.33 12.58 -57.02 -0.72 -12.05 16 25 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.20 3.48 8.06 -2.91 -0.02 3.46 16 29 H 0.08 1.18 7.85 -2.39 -0.02 1.16 16 30 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 1.59 7.48 -2.39 -0.02 1.57 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.10 3.88 7.84 -2.39 -0.02 3.86 16 36 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 37 H -0.03 -1.83 7.97 -2.39 -0.02 -1.85 16 38 H -0.02 -1.44 7.97 -2.38 -0.02 -1.46 16 39 H 0.25 17.48 7.22 -92.71 -0.67 16.81 16 40 H 0.17 5.18 8.06 -2.91 -0.02 5.15 16 Total: -1.00 -88.75 336.24 5.06 -83.69 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 1.11 Total: 12.83 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 6.10 Total: -12.94 kcal Atomic # 7 Polarization: -102.54 SS G_CDS: -4.15 Total: -106.69 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -0.05 Total: -30.36 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 2.05 Total: 53.46 kcal Total: -88.75 5.06 -83.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291770229.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.262 kcal (2) G-P(sol) polarization free energy of solvation -88.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds