Wall clock time and date at job start Mon Mar 30 2020 01:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99940 * 2 1 4 4 C 1.46893 * 111.00056 * 123.95370 * 2 1 3 5 5 C 1.50706 * 109.46958 * 66.05019 * 4 2 1 6 6 C 1.38834 * 120.75778 * 90.00040 * 5 4 2 7 7 C 1.38068 * 119.31363 * 180.02562 * 6 5 4 8 8 N 1.31928 * 120.85170 * 0.02562 * 7 6 5 9 9 C 1.32353 * 121.63719 * 359.97438 * 8 7 6 10 10 N 1.39398 * 119.70066 * 179.97438 * 9 8 7 11 11 C 1.34785 * 119.99865 * 354.62726 * 10 9 8 12 12 O 1.21275 * 119.99874 * 5.08509 * 11 10 9 13 13 C 1.50704 * 119.99766 * 185.09154 * 11 10 9 14 14 C 1.52999 * 109.46446 * 179.97438 * 13 11 10 15 15 C 1.50704 * 109.46446 * 179.97438 * 14 13 11 16 16 H 1.07994 * 120.00399 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99828 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99824 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47448 * 89.99747 * 19 17 15 21 21 H 1.48507 * 109.47017 * 209.99917 * 19 17 15 22 22 H 1.48502 * 109.47051 * 329.99492 * 19 17 15 23 23 C 1.38363 * 120.74787 * 269.72350 * 5 4 2 24 24 H 1.09002 * 109.46932 * 60.00070 * 1 2 3 25 25 H 1.08993 * 109.47734 * 299.99948 * 1 2 3 26 26 H 1.09004 * 109.47184 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46744 * 63.95174 * 3 2 1 28 28 H 1.08994 * 109.47067 * 183.94862 * 3 2 1 29 29 H 1.08997 * 109.47281 * 303.95495 * 3 2 1 30 30 H 1.09000 * 109.47268 * 186.04513 * 4 2 1 31 31 H 1.09004 * 109.47488 * 306.05062 * 4 2 1 32 32 H 1.08000 * 120.34186 * 359.97438 * 6 5 4 33 33 H 1.08003 * 119.57228 * 180.02562 * 7 6 5 34 34 H 0.96997 * 120.00395 * 174.62651 * 10 9 8 35 35 H 1.08997 * 109.46991 * 299.99806 * 13 11 10 36 36 H 1.09005 * 109.47072 * 60.00164 * 13 11 10 37 37 H 1.08997 * 109.47666 * 299.99758 * 14 13 11 38 38 H 1.08994 * 109.47499 * 60.00534 * 14 13 11 39 39 H 0.96998 * 119.99817 * 179.97438 * 18 17 15 40 40 H 1.07994 * 120.45297 * 359.97069 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1375 5 6 1.6370 -2.2204 0.9727 6 6 2.4860 -3.0892 0.3004 7 6 2.1278 -4.4158 0.1664 8 7 0.9926 -4.8640 0.6675 9 6 0.1569 -4.0675 1.3147 10 7 -1.0320 -4.5839 1.8273 11 6 -1.3781 -5.8610 1.5707 12 8 -0.6135 -6.5880 0.9726 13 6 -2.7153 -6.3855 2.0268 14 6 -2.8567 -7.8512 1.6113 15 6 -4.1936 -8.3759 2.0679 16 1 -4.8744 -7.7286 2.6007 17 6 -4.5476 -9.6824 1.8055 18 7 -3.7188 -10.4705 1.1562 19 14 -6.2050 -10.3326 2.3709 20 1 -7.2150 -10.1062 1.3061 21 1 -6.0971 -11.7873 2.6496 22 1 -6.6204 -9.6213 3.6065 23 6 0.4568 -2.7215 1.4929 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.7043 1.8724 0.9234 28 1 3.0827 1.3433 -0.0708 29 1 1.5898 1.9164 -0.8524 30 1 3.0797 -0.6611 1.1756 31 1 1.5610 -0.3873 2.0628 32 1 3.4167 -2.7307 -0.1141 33 1 2.7853 -5.0954 -0.3554 34 1 -1.6103 -4.0242 2.3688 35 1 -2.7857 -6.3066 3.1116 36 1 -3.5114 -5.7995 1.5673 37 1 -2.7865 -7.9298 0.5264 38 1 -2.0608 -8.4375 2.0703 39 1 -3.9677 -11.3897 0.9718 40 1 -0.2245 -2.0749 2.0258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292257016.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:17 Heat of formation + Delta-G solvation = 10.876312 kcal Electronic energy + Delta-G solvation = -20608.483911 eV Core-core repulsion = 17423.629953 eV Total energy + Delta-G solvation = -3184.853958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.69470 -38.92086 -37.54777 -34.63300 -33.46404 -32.85386 -31.14550 -29.82609 -27.94218 -27.66017 -25.86367 -23.47142 -23.30753 -22.13772 -20.79416 -19.58152 -17.58215 -16.98387 -16.21648 -16.04704 -15.88728 -15.50779 -15.21866 -15.14615 -14.79845 -14.42737 -14.16176 -13.73315 -13.26006 -12.81704 -12.75326 -12.34370 -12.23978 -12.20342 -12.11733 -11.89990 -11.74054 -11.18187 -10.93947 -10.60429 -10.48542 -9.96819 -9.78540 -9.67782 -9.56512 -9.11300 -8.77022 -8.65053 -8.32570 -8.12200 -5.95689 -4.00436 1.16318 1.28144 3.14644 3.19831 3.33738 3.39884 3.42370 3.62298 4.08552 4.35828 4.46573 4.53060 4.75169 4.85232 4.93521 5.00066 5.08362 5.13362 5.19294 5.31515 5.36113 5.39186 5.46785 5.54276 5.65282 5.69733 5.85715 6.17732 6.18828 6.22020 6.39660 6.56971 6.61654 6.82255 6.92911 7.48269 7.74264 7.85299 8.06832 8.25360 8.38385 8.75091 9.07934 9.63075 11.15235 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038746 B = 0.002907 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.488940 B = 9630.996923 C =10129.992965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.541 5.541 3 C 0.025 3.975 4 C 0.094 3.906 5 C -0.012 4.012 6 C -0.196 4.196 7 C 0.135 3.865 8 N -0.475 5.475 9 C 0.372 3.628 10 N -0.672 5.672 11 C 0.496 3.504 12 O -0.462 6.462 13 C -0.127 4.127 14 C 0.036 3.964 15 C -0.528 4.528 16 H 0.056 0.944 17 C 0.058 3.942 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.213 4.213 24 H 0.069 0.931 25 H 0.026 0.974 26 H 0.075 0.925 27 H 0.026 0.974 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.132 0.868 33 H 0.157 0.843 34 H 0.413 0.587 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.261 0.739 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.347 24.460 0.666 26.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.265 5.265 3 C -0.124 4.124 4 C -0.033 4.033 5 C -0.020 4.020 6 C -0.218 4.218 7 C -0.024 4.024 8 N -0.190 5.190 9 C 0.140 3.860 10 N -0.319 5.319 11 C 0.283 3.717 12 O -0.329 6.329 13 C -0.167 4.167 14 C -0.001 4.001 15 C -0.566 4.566 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.527 5.527 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.237 4.237 24 H 0.088 0.912 25 H 0.045 0.955 26 H 0.094 0.906 27 H 0.044 0.956 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.150 0.850 33 H 0.174 0.826 34 H 0.249 0.751 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.071 0.929 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 11.751 22.527 -0.362 25.410 hybrid contribution -1.286 1.227 1.389 2.256 sum 10.465 23.754 1.027 25.978 Atomic orbital electron populations 1.22521 0.86953 1.02991 1.00642 1.61952 1.08505 1.13660 1.42370 1.22400 1.00848 0.88432 1.00673 1.21055 1.00781 0.89420 0.92054 1.19755 0.93024 0.94963 0.94300 1.21830 1.01856 0.94688 1.03428 1.22713 0.92027 0.93514 0.94102 1.67776 1.03500 1.37027 1.10696 1.18621 0.87348 0.88410 0.91621 1.44168 1.20082 1.14960 1.52699 1.21925 0.90351 0.79986 0.79442 1.90781 1.51583 1.54733 1.35808 1.21918 0.90670 1.02449 1.01704 1.18918 0.96977 0.86494 0.97721 1.21197 1.01838 0.96539 1.37045 0.92573 1.25032 0.97101 0.97043 0.95227 1.70002 1.35682 1.06752 1.40277 0.86581 0.84194 0.78130 0.78974 1.20667 1.21212 1.19902 1.21306 0.99832 0.94564 1.08044 0.91239 0.95502 0.90607 0.95571 0.91194 0.91115 0.89395 0.93526 0.85046 0.82580 0.75095 0.90020 0.89974 0.95692 0.95681 0.92911 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.29 60.06 0.56 0.69 16 2 N -0.54 -4.52 5.01 -252.72 -1.27 -5.78 16 3 C 0.02 0.15 9.57 60.07 0.57 0.72 16 4 C 0.09 0.75 5.16 -4.98 -0.03 0.73 16 5 C -0.01 -0.12 4.90 -104.35 -0.51 -0.64 16 6 C -0.20 -2.16 9.81 -39.42 -0.39 -2.54 16 7 C 0.13 1.85 11.17 -17.57 -0.20 1.65 16 8 N -0.48 -8.42 7.89 -12.37 -0.10 -8.52 16 9 C 0.37 5.71 7.42 -154.71 -1.15 4.56 16 10 N -0.67 -10.13 5.39 -11.42 -0.06 -10.19 16 11 C 0.50 9.87 7.79 -10.98 -0.09 9.78 16 12 O -0.46 -11.36 14.25 5.56 0.08 -11.28 16 13 C -0.13 -2.57 5.64 -27.88 -0.16 -2.72 16 14 C 0.04 0.98 4.26 -27.88 -0.12 0.87 16 15 C -0.53 -14.99 9.11 -34.44 -0.31 -15.30 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -27.58 13.29 55.43 0.74 -26.85 16 19 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.21 -2.45 7.89 -39.23 -0.31 -2.76 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.08 0.72 5.94 -51.93 -0.31 0.41 16 27 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.60 8.02 -51.93 -0.42 0.18 16 31 H 0.05 0.34 8.08 -51.93 -0.42 -0.08 16 32 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.16 1.79 8.06 -52.48 -0.42 1.37 16 34 H 0.41 4.41 8.70 -40.82 -0.36 4.05 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.02 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.02 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.13 1.13 8.03 -52.49 -0.42 0.71 16 LS Contribution 338.26 15.07 5.10 5.10 Total: -1.00 -36.26 338.26 -8.86 -45.12 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -6.11 Total: -0.94 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -2.22 Total: -3.37 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.69 Total: -51.34 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.08 Total: -11.28 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -36.26 -8.86 -45.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292257016.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.994 kcal (2) G-P(sol) polarization free energy of solvation -36.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds