Wall clock time and date at job start Mon Mar 30 2020 01:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99530 * 2 1 4 4 N 1.46505 * 109.47045 * 125.00012 * 3 2 1 5 5 C 1.46496 * 119.99896 * 269.99656 * 4 3 2 6 6 C 1.50699 * 109.47398 * 270.00022 * 5 4 3 7 7 H 1.08003 * 120.00015 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00048 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99916 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00086 * 0.02562 * 8 6 5 11 11 H 1.48494 * 109.47340 * 89.99836 * 10 8 6 12 12 H 1.48500 * 109.47003 * 210.00191 * 10 8 6 13 13 H 1.48498 * 109.47056 * 329.99743 * 10 8 6 14 14 C 1.34777 * 119.99832 * 90.00120 * 4 3 2 15 15 O 1.21278 * 119.99854 * 180.02562 * 14 4 3 16 16 C 1.50703 * 120.00161 * 359.97438 * 14 4 3 17 17 C 1.53000 * 109.46912 * 180.02562 * 16 14 4 18 18 C 1.50706 * 109.46735 * 180.02562 * 17 16 14 19 19 C 1.39868 * 126.04235 * 90.02210 * 18 17 16 20 20 N 1.30834 * 108.20119 * 179.97438 * 19 18 17 21 21 N 1.40087 * 108.20747 * 0.02562 * 20 19 18 22 22 C 1.46502 * 126.03702 * 179.97438 * 21 20 19 23 23 C 1.34944 * 107.92183 * 359.75018 * 21 20 19 24 24 H 1.08002 * 119.99487 * 180.02562 * 1 2 3 25 25 H 1.07996 * 120.00085 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.00484 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47617 * 4.99876 * 3 2 1 28 28 H 1.09000 * 109.47073 * 244.99633 * 3 2 1 29 29 H 1.09000 * 109.47082 * 30.00019 * 5 4 3 30 30 H 1.09004 * 109.46754 * 150.00286 * 5 4 3 31 31 H 0.96999 * 119.99664 * 180.02562 * 9 8 6 32 32 H 1.09002 * 109.47152 * 60.00245 * 16 14 4 33 33 H 1.09001 * 109.46980 * 300.00345 * 16 14 4 34 34 H 1.09001 * 109.47194 * 299.99742 * 17 16 14 35 35 H 1.08992 * 109.47399 * 59.99914 * 17 16 14 36 36 H 1.07996 * 125.89872 * 0.02562 * 19 18 17 37 37 H 1.08995 * 109.47022 * 89.97292 * 22 21 20 38 38 H 1.09000 * 109.46865 * 209.97477 * 22 21 20 39 39 H 1.08999 * 109.46712 * 329.97010 * 22 21 20 40 40 H 1.08000 * 126.12322 * 180.23971 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5587 1.8651 2.4248 6 6 2.8441 3.3438 2.4804 7 1 3.3031 3.8373 1.6365 8 6 2.5191 4.0666 3.6086 9 7 2.7686 5.3571 3.6572 10 14 1.7258 3.2130 5.0685 11 1 2.7825 2.7228 5.9894 12 1 0.8494 4.1728 5.7868 13 1 0.9148 2.0649 4.5898 14 6 4.2497 0.8664 0.9824 15 8 5.0196 0.8882 1.9192 16 6 4.6969 0.3176 -0.3480 17 6 6.1531 -0.1408 -0.2470 18 6 6.6006 -0.6890 -1.5776 19 6 7.1914 0.0430 -2.6126 20 7 7.4388 -0.7757 -3.6027 21 7 7.0121 -2.0565 -3.2286 22 6 7.1036 -3.2685 -4.0465 23 6 6.5063 -1.9775 -1.9800 24 1 -0.5399 -0.9354 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8501 -0.9352 -0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6212 1.4027 -0.9314 29 1 1.4887 1.6967 2.5459 30 1 3.0989 1.3605 3.2259 31 1 2.5403 5.8655 4.4511 32 1 4.6120 1.0940 -1.1084 33 1 4.0678 -0.5294 -0.6217 34 1 6.7825 0.7060 0.0269 35 1 6.2377 -0.9172 0.5133 36 1 7.4070 1.1011 -2.5969 37 1 8.0558 -3.7638 -3.8568 38 1 6.2861 -3.9423 -3.7901 39 1 7.0368 -3.0010 -5.1011 40 1 6.0974 -2.7957 -1.4058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292275663.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:07 Heat of formation + Delta-G solvation = 38.797838 kcal Electronic energy + Delta-G solvation = -20972.632223 eV Core-core repulsion = 17788.989033 eV Total energy + Delta-G solvation = -3183.643190 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.09691 -40.70938 -37.25303 -35.38466 -34.91064 -33.70846 -33.44077 -30.95865 -29.75773 -27.68478 -26.83902 -25.34829 -23.51296 -21.95777 -21.18736 -20.88230 -19.75150 -19.06645 -18.05001 -17.32671 -17.23737 -16.53991 -16.26586 -15.99329 -15.62096 -15.23731 -14.98199 -14.66825 -14.25623 -14.12415 -13.88597 -13.64675 -13.53272 -13.44893 -13.10521 -12.89435 -12.84201 -12.69745 -12.46271 -12.25578 -11.95660 -11.92175 -11.71862 -11.40994 -10.81909 -10.60075 -10.31874 -10.28575 -9.38998 -9.25159 -8.32655 -6.37359 0.98828 1.32119 1.36719 1.37554 1.45909 1.75091 1.83005 1.88541 2.32044 2.52217 3.01778 3.64590 3.83272 4.03929 4.11184 4.25578 4.26126 4.30706 4.41472 4.46537 4.48765 4.65965 4.73062 4.74628 4.80886 4.81593 4.94230 4.94544 5.01884 5.11293 5.31727 5.39622 5.48357 5.58648 5.72737 5.74921 5.96189 6.20417 6.26561 6.64156 6.75510 6.76876 7.23741 7.48898 8.84386 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023238 B = 0.003873 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.624064 B = 7227.490442 C = 7875.647727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.179 4.179 3 C 0.132 3.868 4 N -0.599 5.599 5 C 0.227 3.773 6 C -0.535 4.535 7 H 0.029 0.971 8 C 0.010 3.990 9 N -0.946 5.946 10 Si 0.947 3.053 11 H -0.275 1.275 12 H -0.275 1.275 13 H -0.239 1.239 14 C 0.497 3.503 15 O -0.594 6.594 16 C -0.115 4.115 17 C -0.015 4.015 18 C -0.246 4.246 19 C 0.041 3.959 20 N -0.335 5.335 21 N -0.381 5.381 22 C 0.093 3.907 23 C 0.066 3.934 24 H 0.119 0.881 25 H 0.096 0.904 26 H 0.122 0.878 27 H 0.072 0.928 28 H 0.102 0.898 29 H 0.044 0.956 30 H 0.018 0.982 31 H 0.268 0.732 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.188 0.812 37 H 0.084 0.916 38 H 0.116 0.884 39 H 0.089 0.911 40 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.537 -20.636 -15.052 25.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.198 4.198 3 C 0.010 3.990 4 N -0.329 5.329 5 C 0.105 3.895 6 C -0.574 4.574 7 H 0.047 0.953 8 C -0.187 4.187 9 N -0.586 5.586 10 Si 0.770 3.230 11 H -0.201 1.201 12 H -0.200 1.200 13 H -0.162 1.162 14 C 0.287 3.713 15 O -0.475 6.475 16 C -0.154 4.154 17 C -0.054 4.054 18 C -0.258 4.258 19 C -0.144 4.144 20 N -0.157 5.157 21 N -0.163 5.163 22 C -0.047 4.047 23 C -0.080 4.080 24 H 0.137 0.863 25 H 0.114 0.886 26 H 0.139 0.861 27 H 0.091 0.909 28 H 0.120 0.880 29 H 0.062 0.938 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.117 0.883 33 H 0.134 0.866 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.205 0.795 37 H 0.102 0.898 38 H 0.134 0.866 39 H 0.107 0.893 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 1.394 -20.730 -15.770 26.084 hybrid contribution -0.371 0.765 1.690 1.892 sum 1.024 -19.965 -14.081 24.452 Atomic orbital electron populations 1.24065 0.95581 1.02867 0.98518 1.23317 0.96660 0.98151 1.01667 1.20816 0.92635 0.96488 0.89064 1.48025 1.12196 1.60040 1.12606 1.19246 0.95234 0.92041 0.83010 1.21589 1.40390 0.93593 1.01784 0.95274 1.25849 0.95984 0.95361 1.01542 1.70056 1.49539 1.08518 1.30505 0.85726 0.79078 0.79350 0.78886 1.20109 1.19992 1.16235 1.21542 0.81027 0.77259 0.91493 1.90630 1.53713 1.58605 1.44538 1.21680 0.98377 1.02800 0.92569 1.19410 0.93404 1.00225 0.92344 1.20062 1.13061 0.93802 0.98837 1.24076 0.98441 1.00572 0.91267 1.77278 1.24056 0.89751 1.24609 1.48815 1.46778 1.07899 1.12851 1.22187 1.04934 0.81743 0.95788 1.22820 0.98979 0.99191 0.87059 0.86317 0.88584 0.86059 0.90917 0.88013 0.93824 0.96401 0.92301 0.88320 0.86566 0.92741 0.91146 0.79475 0.89786 0.86561 0.89274 0.77659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.60 14.32 67.78 0.97 -2.63 16 2 C -0.18 -4.22 9.74 25.65 0.25 -3.97 16 3 C 0.13 3.98 5.65 85.63 0.48 4.46 16 4 N -0.60 -24.28 2.44 -830.50 -2.03 -26.30 16 5 C 0.23 11.22 4.23 85.63 0.36 11.58 16 6 C -0.53 -31.92 9.94 25.60 0.25 -31.66 16 7 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 8 C 0.01 0.63 5.47 84.65 0.46 1.09 16 9 N -0.95 -60.51 13.96 21.45 0.30 -60.21 16 10 Si 0.95 45.03 27.47 68.60 1.88 46.91 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 13 H -0.24 -10.25 6.54 99.48 0.65 -9.60 16 14 C 0.50 19.79 7.67 87.66 0.67 20.46 16 15 O -0.59 -29.53 15.56 -3.02 -0.05 -29.57 16 16 C -0.11 -3.08 4.23 29.85 0.13 -2.95 16 17 C -0.01 -0.39 4.99 29.85 0.15 -0.24 16 18 C -0.25 -5.58 5.35 -20.14 -0.11 -5.68 16 19 C 0.04 1.01 11.96 85.24 1.02 2.03 16 20 N -0.33 -8.34 12.58 -57.03 -0.72 -9.06 16 21 N -0.38 -7.06 4.01 -369.57 -1.48 -8.54 16 22 C 0.09 0.81 11.47 127.77 1.47 2.28 16 23 C 0.07 1.17 11.40 83.54 0.95 2.12 16 24 H 0.12 1.92 8.06 -2.91 -0.02 1.89 16 25 H 0.10 2.07 7.84 -2.91 -0.02 2.04 16 26 H 0.12 2.47 7.83 -2.91 -0.02 2.45 16 27 H 0.07 2.39 7.72 -2.39 -0.02 2.37 16 28 H 0.10 2.54 6.44 -2.39 -0.02 2.52 16 29 H 0.04 2.01 7.13 -2.39 -0.02 2.00 16 30 H 0.02 0.95 6.85 -2.39 -0.02 0.93 16 31 H 0.27 15.92 8.31 -92.71 -0.77 15.14 16 32 H 0.10 2.48 7.40 -2.39 -0.02 2.46 16 33 H 0.12 2.38 7.77 -2.39 -0.02 2.36 16 34 H 0.05 1.69 8.10 -2.39 -0.02 1.67 16 35 H 0.07 1.89 8.10 -2.39 -0.02 1.87 16 36 H 0.19 4.00 8.06 -2.91 -0.02 3.98 16 37 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.21 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -82.45 343.35 5.93 -76.52 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.95 Total: 13.37 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: 7.06 Total: -3.11 kcal Atomic # 7 Polarization: -100.19 SS G_CDS: -3.93 Total: -104.12 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.05 Total: -29.57 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.88 Total: 46.91 kcal Total: -82.45 5.93 -76.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292275663.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.317 kcal (2) G-P(sol) polarization free energy of solvation -82.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds