Wall clock time and date at job start Mon Mar 30 2020 02:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50698 * 119.99948 * 2 1 4 4 N 1.46902 * 109.47078 * 124.99836 * 3 2 1 5 5 C 1.46900 * 111.00020 * 292.96557 * 4 3 2 6 6 C 1.50704 * 109.46926 * 296.55524 * 5 4 3 7 7 H 1.07995 * 119.99794 * 4.72779 * 6 5 4 8 8 C 1.37879 * 120.00011 * 184.72579 * 6 5 4 9 9 N 1.31518 * 119.99670 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00071 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47332 * 60.00093 * 10 8 6 12 12 H 1.48494 * 109.47081 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47147 * 300.00095 * 10 8 6 14 14 C 1.46897 * 111.00092 * 169.01185 * 4 3 2 15 15 H 1.09003 * 109.47101 * 63.94859 * 14 4 3 16 16 C 1.52993 * 109.47335 * 183.95474 * 14 4 3 17 17 C 1.50705 * 109.46941 * 303.95241 * 14 4 3 18 18 N 1.31075 * 126.66111 * 315.02579 * 17 14 4 19 19 N 1.28842 * 107.98938 * 179.97438 * 18 17 14 20 20 N 1.28742 * 109.39820 * 0.02562 * 19 18 17 21 21 N 1.29023 * 108.80722 * 359.74344 * 20 19 18 22 22 C 1.46500 * 126.43675 * 180.24872 * 21 20 19 23 23 C 1.52997 * 117.49974 * 8.92781 * 22 21 20 24 24 C 1.53000 * 117.49815 * 300.27057 * 22 21 20 25 25 H 1.07995 * 119.99869 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.00037 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.99653 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47268 * 4.99909 * 3 2 1 29 29 H 1.09003 * 109.47052 * 244.99659 * 3 2 1 30 30 H 1.09001 * 109.47488 * 56.55213 * 5 4 3 31 31 H 1.08992 * 109.47427 * 176.55637 * 5 4 3 32 32 H 0.97002 * 119.99521 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.47282 * 299.99734 * 16 14 4 34 34 H 1.09003 * 109.47529 * 59.99647 * 16 14 4 35 35 H 1.08997 * 109.47675 * 179.97438 * 16 14 4 36 36 H 1.08996 * 115.55194 * 154.59346 * 22 21 20 37 37 H 1.09008 * 117.50081 * 359.97438 * 23 22 21 38 38 H 1.09000 * 117.50236 * 145.02157 * 23 22 21 39 39 H 1.08999 * 117.49334 * 214.98028 * 24 22 21 40 40 H 1.08997 * 117.50217 * 359.96911 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1346 5 6 2.2711 1.3707 2.4115 6 6 1.4768 2.6484 2.4995 7 1 1.4465 3.3244 1.6578 8 6 0.7889 2.9544 3.6546 9 7 0.8262 2.1313 4.6797 10 14 -0.1951 4.5384 3.7639 11 1 -1.2418 4.5446 2.7106 12 1 -0.8361 4.6316 5.1001 13 1 0.7111 5.6984 3.5681 14 6 3.9278 2.4624 1.0236 15 1 3.3719 3.3983 1.0815 16 6 4.9431 2.4008 2.1664 17 6 4.6518 2.3891 -0.2961 18 7 5.1879 1.3220 -0.8363 19 7 5.7111 1.6662 -1.9624 20 7 5.5230 2.9252 -2.1542 21 7 4.8689 3.4057 -1.1511 22 6 4.4450 4.7968 -0.9746 23 6 4.6174 5.7442 -2.1636 24 6 5.5357 5.8694 -0.9454 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6214 1.4026 -0.9314 30 1 1.5950 0.5178 2.4715 31 1 2.9835 1.3283 3.2353 32 1 0.3425 2.3467 5.4924 33 1 4.4195 2.4538 3.1210 34 1 5.4990 1.4649 2.1085 35 1 5.6345 3.2393 2.0839 36 1 3.5754 4.9457 -0.3345 37 1 5.0467 5.3325 -3.0771 38 1 3.8615 6.5166 -2.3055 39 1 5.3835 6.7241 -0.2862 40 1 6.5687 5.5400 -1.0569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292311967.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:17 Heat of formation + Delta-G solvation = 176.322730 kcal Electronic energy + Delta-G solvation = -22370.460781 eV Core-core repulsion = 19225.073869 eV Total energy + Delta-G solvation = -3145.386912 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.89804 -37.98363 -37.83229 -33.79599 -33.43791 -32.95363 -31.54007 -29.47854 -27.29069 -25.08232 -24.44712 -24.30676 -22.93786 -22.32357 -21.14531 -19.66675 -19.07708 -17.82821 -16.78333 -16.45002 -15.58278 -15.45906 -15.14153 -14.52225 -14.39452 -13.55687 -13.31111 -13.12024 -12.80569 -12.32112 -12.22914 -11.99306 -11.94291 -11.86005 -11.70051 -11.38583 -11.16885 -11.01524 -10.91280 -10.86154 -10.67352 -10.46857 -10.33438 -10.17063 -10.07286 -9.81178 -9.59198 -8.70925 -8.53079 -7.38000 -6.14955 -4.25118 1.43573 2.02289 2.58677 2.91917 3.16136 3.23341 3.24571 3.27948 4.02850 4.24697 4.29029 4.35661 4.47714 4.60603 5.06580 5.16302 5.22535 5.27300 5.46044 5.61188 5.65166 5.68751 5.74710 5.80046 5.85379 5.97685 6.02532 6.18825 6.35520 6.39141 6.46319 6.55434 6.72074 7.08261 7.24013 7.36285 7.41879 7.78612 7.87071 8.05720 8.13703 8.82833 8.94066 9.41545 10.90026 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.015269 B = 0.006677 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.304803 B = 4192.340588 C = 5018.595488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.124 4.124 3 C 0.086 3.914 4 N -0.518 5.518 5 C 0.186 3.814 6 C -0.555 4.555 7 H 0.052 0.948 8 C 0.071 3.929 9 N -0.884 5.884 10 Si 0.885 3.115 11 H -0.277 1.277 12 H -0.285 1.285 13 H -0.277 1.277 14 C 0.172 3.828 15 H 0.072 0.928 16 C -0.136 4.136 17 C 0.212 3.788 18 N -0.282 5.282 19 N -0.087 5.087 20 N -0.114 5.114 21 N -0.286 5.286 22 C 0.052 3.948 23 C -0.156 4.156 24 C -0.163 4.163 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.106 0.894 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.040 0.960 31 H 0.044 0.956 32 H 0.264 0.736 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.161 0.839 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.159 7.149 -8.374 12.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.142 4.142 3 C -0.042 4.042 4 N -0.243 5.243 5 C 0.062 3.938 6 C -0.594 4.594 7 H 0.070 0.930 8 C -0.133 4.133 9 N -0.522 5.522 10 Si 0.712 3.288 11 H -0.203 1.203 12 H -0.211 1.211 13 H -0.203 1.203 14 C 0.060 3.940 15 H 0.089 0.911 16 C -0.194 4.194 17 C -0.066 4.066 18 N -0.131 5.131 19 N -0.080 5.080 20 N -0.099 5.099 21 N -0.086 5.086 22 C -0.052 4.052 23 C -0.194 4.194 24 C -0.202 4.202 25 H 0.111 0.889 26 H 0.108 0.892 27 H 0.124 0.876 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.178 0.822 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.099 5.945 -9.217 12.550 hybrid contribution -1.690 2.209 0.784 2.890 sum 4.409 8.154 -8.434 12.532 Atomic orbital electron populations 1.23686 0.95972 1.01129 1.02512 1.22686 0.95296 0.98224 0.98024 1.21072 0.94364 0.95552 0.93189 1.62547 1.18278 1.38694 1.04754 1.19893 0.92920 0.96521 0.84498 1.21570 1.31689 1.06549 0.99552 0.92951 1.24896 0.96181 0.96524 0.95650 1.69918 1.41936 1.36168 1.04132 0.86781 0.80544 0.83977 0.77470 1.20296 1.21080 1.20284 1.19978 0.92967 0.96506 0.84580 0.91058 1.21798 0.97586 1.01546 0.98480 1.26517 0.99944 0.82919 0.97220 1.75131 1.12259 1.22652 1.03028 1.78594 1.16675 1.02246 1.10509 1.78715 1.13205 1.07361 1.10615 1.47853 1.36924 1.10431 1.13431 1.22345 1.02475 0.73565 1.06818 1.23423 1.02734 0.99726 0.93521 1.23511 0.96503 0.98969 1.01209 0.88889 0.89167 0.87619 0.93501 0.93212 0.94238 0.93829 0.92573 0.89208 0.91534 0.93418 0.82201 0.86696 0.86519 0.86314 0.87598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.42 14.32 29.01 0.42 -3.00 16 2 C -0.12 -2.32 8.62 -36.03 -0.31 -2.63 16 3 C 0.09 1.68 5.05 -4.98 -0.03 1.66 16 4 N -0.52 -10.54 4.56 -230.91 -1.05 -11.59 16 5 C 0.19 4.38 4.60 -4.97 -0.02 4.35 16 6 C -0.55 -13.63 7.49 -34.44 -0.26 -13.88 16 7 H 0.05 1.25 5.87 -52.49 -0.31 0.94 16 8 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 9 N -0.88 -24.16 13.29 55.43 0.74 -23.43 16 10 Si 0.88 19.68 29.54 -169.99 -5.02 14.66 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 13 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 14 C 0.17 3.10 2.17 -68.87 -0.15 2.95 16 15 H 0.07 1.29 5.43 -51.93 -0.28 1.01 16 16 C -0.14 -2.30 8.94 37.15 0.33 -1.97 16 17 C 0.21 3.72 5.17 -155.43 -0.80 2.92 16 18 N -0.28 -5.52 12.15 32.70 0.40 -5.12 16 19 N -0.09 -1.65 13.43 60.35 0.81 -0.84 16 20 N -0.11 -1.92 12.69 60.35 0.77 -1.16 16 21 N -0.29 -4.39 3.67 -51.81 -0.19 -4.58 16 22 C 0.05 0.58 6.59 -67.93 -0.45 0.14 16 23 C -0.16 -1.33 10.16 -26.70 -0.27 -1.61 16 24 C -0.16 -1.39 10.46 -26.70 -0.28 -1.67 16 25 H 0.09 1.66 7.84 -52.49 -0.41 1.25 16 26 H 0.09 1.39 8.06 -52.48 -0.42 0.97 16 27 H 0.11 1.93 8.06 -52.48 -0.42 1.51 16 28 H 0.05 0.96 6.07 -51.93 -0.32 0.65 16 29 H 0.05 0.98 6.44 -51.93 -0.33 0.64 16 30 H 0.04 1.02 7.22 -51.93 -0.37 0.65 16 31 H 0.04 1.09 6.28 -51.93 -0.33 0.76 16 32 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.09 1.66 6.39 -51.93 -0.33 1.33 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.16 1.68 7.23 -51.93 -0.38 1.30 16 37 H 0.11 1.09 7.85 -51.92 -0.41 0.68 16 38 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.12 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 331.41 15.07 4.99 4.99 Total: -1.00 -28.92 331.41 -6.04 -34.96 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -5.56 Total: 3.11 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -1.92 Total: -11.01 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 1.47 Total: -46.71 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.92 -6.04 -34.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292311967.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.279 kcal (2) G-P(sol) polarization free energy of solvation -28.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 176.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds