Wall clock time and date at job start Mon Mar 30 2020 02:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50698 * 119.99948 * 2 1 4 4 N 1.46902 * 109.47078 * 124.99836 * 3 2 1 5 5 C 1.46900 * 111.00020 * 292.96557 * 4 3 2 6 6 C 1.50704 * 109.46926 * 296.55524 * 5 4 3 7 7 H 1.07995 * 119.99794 * 4.72779 * 6 5 4 8 8 C 1.37879 * 120.00011 * 184.72579 * 6 5 4 9 9 N 1.31518 * 119.99670 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00071 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47332 * 60.00093 * 10 8 6 12 12 H 1.48494 * 109.47081 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47147 * 300.00095 * 10 8 6 14 14 C 1.46897 * 111.00092 * 169.01185 * 4 3 2 15 15 H 1.09003 * 109.47101 * 63.94859 * 14 4 3 16 16 C 1.52993 * 109.47335 * 183.95474 * 14 4 3 17 17 C 1.50705 * 109.46941 * 303.95241 * 14 4 3 18 18 N 1.31075 * 126.66111 * 315.02579 * 17 14 4 19 19 N 1.28842 * 107.98938 * 179.97438 * 18 17 14 20 20 N 1.28742 * 109.39820 * 0.02562 * 19 18 17 21 21 N 1.29023 * 108.80722 * 359.74344 * 20 19 18 22 22 C 1.46500 * 126.43675 * 180.24872 * 21 20 19 23 23 C 1.52997 * 117.49974 * 8.92781 * 22 21 20 24 24 C 1.53000 * 117.49815 * 300.27057 * 22 21 20 25 25 H 1.07995 * 119.99869 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.00037 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.99653 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47268 * 4.99909 * 3 2 1 29 29 H 1.09003 * 109.47052 * 244.99659 * 3 2 1 30 30 H 1.09001 * 109.47488 * 56.55213 * 5 4 3 31 31 H 1.08992 * 109.47427 * 176.55637 * 5 4 3 32 32 H 0.97002 * 119.99521 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.47282 * 299.99734 * 16 14 4 34 34 H 1.09003 * 109.47529 * 59.99647 * 16 14 4 35 35 H 1.08997 * 109.47675 * 179.97438 * 16 14 4 36 36 H 1.08996 * 115.55194 * 154.59346 * 22 21 20 37 37 H 1.09008 * 117.50081 * 359.97438 * 23 22 21 38 38 H 1.09000 * 117.50236 * 145.02157 * 23 22 21 39 39 H 1.08999 * 117.49334 * 214.98028 * 24 22 21 40 40 H 1.08997 * 117.50217 * 359.96911 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1346 5 6 2.2711 1.3707 2.4115 6 6 1.4768 2.6484 2.4995 7 1 1.4465 3.3244 1.6578 8 6 0.7889 2.9544 3.6546 9 7 0.8262 2.1313 4.6797 10 14 -0.1951 4.5384 3.7639 11 1 -1.2418 4.5446 2.7106 12 1 -0.8361 4.6316 5.1001 13 1 0.7111 5.6984 3.5681 14 6 3.9278 2.4624 1.0236 15 1 3.3719 3.3983 1.0815 16 6 4.9431 2.4008 2.1664 17 6 4.6518 2.3891 -0.2961 18 7 5.1879 1.3220 -0.8363 19 7 5.7111 1.6662 -1.9624 20 7 5.5230 2.9252 -2.1542 21 7 4.8689 3.4057 -1.1511 22 6 4.4450 4.7968 -0.9746 23 6 4.6174 5.7442 -2.1636 24 6 5.5357 5.8694 -0.9454 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6214 1.4026 -0.9314 30 1 1.5950 0.5178 2.4715 31 1 2.9835 1.3283 3.2353 32 1 0.3425 2.3467 5.4924 33 1 4.4195 2.4538 3.1210 34 1 5.4990 1.4649 2.1085 35 1 5.6345 3.2393 2.0839 36 1 3.5754 4.9457 -0.3345 37 1 5.0467 5.3325 -3.0771 38 1 3.8615 6.5166 -2.3055 39 1 5.3835 6.7241 -0.2862 40 1 6.5687 5.5400 -1.0569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292311967.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:17 Heat of formation + Delta-G solvation = 157.896877 kcal Electronic energy + Delta-G solvation = -22371.259786 eV Core-core repulsion = 19225.073869 eV Total energy + Delta-G solvation = -3146.185917 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.23901 -39.48722 -38.82357 -35.23440 -34.82066 -34.64471 -33.08523 -30.94476 -29.09520 -26.30744 -26.13268 -25.74641 -24.02984 -23.43038 -22.35190 -21.17266 -20.63335 -18.94569 -18.30625 -18.07941 -17.09735 -16.92309 -16.23025 -16.04502 -15.92124 -14.89039 -14.55716 -14.50359 -14.34098 -14.01566 -13.53340 -13.36155 -13.24180 -13.12507 -13.02861 -12.76424 -12.63918 -12.57742 -12.41969 -12.27030 -12.05082 -11.97835 -11.75817 -11.72273 -11.63703 -11.34642 -10.85937 -10.51000 -10.17926 -9.08288 -8.09027 -6.27067 0.14141 0.89603 1.16409 1.42240 1.44486 1.45961 1.50975 2.42212 2.50960 2.87917 3.04545 3.19029 3.28581 3.57825 3.73430 3.74789 4.11971 4.15834 4.24171 4.30649 4.36310 4.48030 4.52510 4.62077 4.76008 4.78430 4.81563 4.90921 4.98262 5.05874 5.06035 5.24028 5.28259 5.30702 5.45014 5.75970 5.82868 5.85476 6.08458 6.25234 6.38786 6.89959 7.43736 7.56774 8.94078 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.015269 B = 0.006677 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.304803 B = 4192.340588 C = 5018.595488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.146 4.146 3 C 0.096 3.904 4 N -0.524 5.524 5 C 0.204 3.796 6 C -0.551 4.551 7 H 0.060 0.940 8 C 0.022 3.978 9 N -0.922 5.922 10 Si 0.946 3.054 11 H -0.275 1.275 12 H -0.290 1.290 13 H -0.261 1.261 14 C 0.177 3.823 15 H 0.076 0.924 16 C -0.129 4.129 17 C 0.207 3.793 18 N -0.307 5.307 19 N -0.112 5.112 20 N -0.106 5.106 21 N -0.270 5.270 22 C 0.010 3.990 23 C -0.140 4.140 24 C -0.144 4.144 25 H 0.089 0.911 26 H 0.113 0.887 27 H 0.107 0.893 28 H 0.037 0.963 29 H 0.048 0.952 30 H 0.010 0.990 31 H 0.025 0.975 32 H 0.263 0.737 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.169 0.831 37 H 0.105 0.895 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.890 9.580 -9.202 14.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.165 4.165 3 C -0.032 4.032 4 N -0.248 5.248 5 C 0.079 3.921 6 C -0.590 4.590 7 H 0.078 0.922 8 C -0.178 4.178 9 N -0.561 5.561 10 Si 0.772 3.228 11 H -0.200 1.200 12 H -0.216 1.216 13 H -0.185 1.185 14 C 0.065 3.935 15 H 0.093 0.907 16 C -0.187 4.187 17 C -0.072 4.072 18 N -0.156 5.156 19 N -0.105 5.105 20 N -0.091 5.091 21 N -0.071 5.071 22 C -0.092 4.092 23 C -0.177 4.177 24 C -0.183 4.183 25 H 0.108 0.892 26 H 0.131 0.869 27 H 0.125 0.875 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.029 0.971 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.186 0.814 37 H 0.123 0.877 38 H 0.164 0.836 39 H 0.165 0.835 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.844 8.398 -10.073 14.358 hybrid contribution -1.594 1.495 0.981 2.395 sum 4.250 9.893 -9.093 14.093 Atomic orbital electron populations 1.23865 0.95591 1.02087 1.00532 1.22744 0.95907 0.97981 0.99847 1.20969 0.93903 0.95684 0.92637 1.62428 1.18338 1.40282 1.03777 1.19498 0.91993 0.95176 0.85461 1.21793 1.31007 1.06668 0.99509 0.92180 1.25654 0.97289 0.99503 0.95392 1.70052 1.43190 1.38125 1.04732 0.85788 0.79262 0.80766 0.76999 1.20011 1.21634 1.18529 1.19929 0.92676 0.95602 0.85330 0.90653 1.21726 0.97530 1.02357 0.97118 1.26185 1.00379 0.83355 0.97257 1.75047 1.12992 1.24023 1.03558 1.78569 1.17986 1.03178 1.10807 1.78628 1.12926 1.06779 1.10785 1.48114 1.35333 1.11593 1.12062 1.22947 1.04512 0.71974 1.09795 1.23569 1.03054 0.98682 0.92437 1.23647 0.95297 0.97942 1.01373 0.89237 0.86854 0.87471 0.94491 0.93329 0.97146 0.95668 0.92760 0.91018 0.92296 0.90700 0.81391 0.87686 0.83602 0.83459 0.88404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.26 14.32 67.78 0.97 -5.29 16 2 C -0.15 -5.47 8.62 25.64 0.22 -5.25 16 3 C 0.10 3.75 5.05 85.56 0.43 4.18 16 4 N -0.52 -21.50 4.56 -884.48 -4.03 -25.53 16 5 C 0.20 9.78 4.60 85.56 0.39 10.17 16 6 C -0.55 -26.89 7.49 25.60 0.19 -26.70 16 7 H 0.06 2.80 5.87 -2.91 -0.02 2.78 16 8 C 0.02 1.11 5.46 84.65 0.46 1.58 16 9 N -0.92 -50.90 13.29 21.45 0.28 -50.62 16 10 Si 0.95 39.55 29.54 68.60 2.03 41.57 16 11 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 12 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 13 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 14 C 0.18 6.29 2.17 44.17 0.10 6.38 16 15 H 0.08 2.63 5.43 -2.39 -0.01 2.62 16 16 C -0.13 -4.33 8.94 71.98 0.64 -3.69 16 17 C 0.21 7.13 5.17 138.13 0.71 7.85 16 18 N -0.31 -12.02 12.15 -50.45 -0.61 -12.63 16 19 N -0.11 -4.26 13.43 37.01 0.50 -3.76 16 20 N -0.11 -3.47 12.69 37.02 0.47 -3.00 16 21 N -0.27 -7.94 3.67 -317.82 -1.17 -9.11 16 22 C 0.01 0.19 6.59 44.99 0.30 0.49 16 23 C -0.14 -1.93 10.16 30.62 0.31 -1.62 16 24 C -0.14 -1.97 10.46 30.62 0.32 -1.65 16 25 H 0.09 3.11 7.84 -2.91 -0.02 3.09 16 26 H 0.11 3.31 8.06 -2.91 -0.02 3.29 16 27 H 0.11 3.95 8.06 -2.91 -0.02 3.92 16 28 H 0.04 1.51 6.07 -2.39 -0.01 1.49 16 29 H 0.05 1.90 6.44 -2.39 -0.02 1.89 16 30 H 0.01 0.56 7.22 -2.39 -0.02 0.54 16 31 H 0.03 1.30 6.28 -2.39 -0.02 1.28 16 32 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 33 H 0.07 2.68 6.39 -2.39 -0.02 2.66 16 34 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.17 3.08 7.23 -2.39 -0.02 3.06 16 37 H 0.10 1.72 7.85 -2.38 -0.02 1.70 16 38 H 0.15 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.15 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -62.39 331.41 3.56 -58.83 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 1.04 Total: 17.80 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: 5.05 Total: -13.55 kcal Atomic # 7 Polarization: -100.09 SS G_CDS: -4.56 Total: -104.65 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.57 kcal Total: -62.39 3.56 -58.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292311967.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.723 kcal (2) G-P(sol) polarization free energy of solvation -62.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds