Wall clock time and date at job start Mon Mar 30 2020 02:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 120.00294 * 2 1 4 4 N 1.46900 * 109.47057 * 124.29945 * 3 2 1 5 5 C 1.46899 * 110.99989 * 297.87033 * 4 3 2 6 6 C 1.50698 * 109.47411 * 293.47711 * 5 4 3 7 7 H 1.08003 * 119.99652 * 354.95175 * 6 5 4 8 8 C 1.37875 * 120.00002 * 174.96182 * 6 5 4 9 9 N 1.31512 * 120.00281 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99740 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47176 * 59.99908 * 10 8 6 12 12 H 1.48498 * 109.46945 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47078 * 299.99970 * 10 8 6 14 14 C 1.46902 * 110.99943 * 61.82777 * 4 3 2 15 15 H 1.09005 * 109.46700 * 296.04462 * 14 4 3 16 16 C 1.52994 * 109.46990 * 176.04744 * 14 4 3 17 17 C 1.50692 * 109.47411 * 56.04214 * 14 4 3 18 18 N 1.31077 * 126.65713 * 44.68700 * 17 14 4 19 19 N 1.28844 * 107.98761 * 179.89423 * 18 17 14 20 20 N 1.28733 * 109.40019 * 0.37640 * 19 18 17 21 21 N 1.29026 * 108.80979 * 359.76944 * 20 19 18 22 22 C 1.46495 * 126.44124 * 179.97438 * 21 20 19 23 23 C 1.53008 * 117.49771 * 8.77001 * 22 21 20 24 24 C 1.53001 * 117.49768 * 300.11222 * 22 21 20 25 25 H 1.07998 * 119.99560 * 359.97438 * 1 2 3 26 26 H 1.07994 * 119.99949 * 179.97438 * 1 2 3 27 27 H 1.08007 * 119.99824 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.46732 * 4.30178 * 3 2 1 29 29 H 1.09001 * 109.47149 * 244.30197 * 3 2 1 30 30 H 1.09003 * 109.46830 * 53.47463 * 5 4 3 31 31 H 1.09004 * 109.46906 * 173.47303 * 5 4 3 32 32 H 0.96999 * 120.00206 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.47635 * 59.99636 * 16 14 4 34 34 H 1.09005 * 109.47169 * 299.99430 * 16 14 4 35 35 H 1.09005 * 109.47484 * 179.97438 * 16 14 4 36 36 H 1.08997 * 115.55291 * 154.43388 * 22 21 20 37 37 H 1.08997 * 117.49837 * 359.97438 * 23 22 21 38 38 H 1.08994 * 117.49909 * 145.02349 * 23 22 21 39 39 H 1.09004 * 117.49701 * 214.97930 * 24 22 21 40 40 H 1.08994 * 117.50012 * 359.97207 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9843 1.3389 1.1441 5 6 2.2490 1.2681 2.4139 6 6 1.4286 2.5199 2.5898 7 1 1.5132 3.3257 1.8757 8 6 0.5703 2.6366 3.6625 9 7 0.4671 1.6553 4.5319 10 14 -0.4460 4.1887 3.8809 11 1 -1.3231 4.3767 2.6974 12 1 -1.2824 4.0650 5.1017 13 1 0.4592 5.3580 4.0168 14 6 3.9792 0.2621 1.0512 15 1 3.4764 -0.7033 1.1106 16 6 4.9773 0.3890 2.2038 17 6 4.7118 0.3669 -0.2615 18 7 5.1880 1.4596 -0.8069 19 7 5.7458 1.1369 -1.9226 20 7 5.6309 -0.1319 -2.1069 21 7 4.9990 -0.6424 -1.1044 22 6 4.6579 -2.0549 -0.9187 23 6 5.2591 -3.0620 -1.9013 24 6 3.7707 -2.7125 -1.9777 25 1 -0.5399 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3578 2.1321 0.0771 29 1 2.6312 1.3969 -0.9260 30 1 1.5897 0.4001 2.4040 31 1 2.9560 1.1780 3.2386 32 1 -0.1365 1.7375 5.2868 33 1 4.4474 0.3131 3.1533 34 1 5.4801 1.3543 2.1444 35 1 5.7153 -0.4103 2.1352 36 1 4.5297 -2.3757 0.1151 37 1 5.9081 -2.6734 -2.6862 38 1 5.5259 -4.0452 -1.5141 39 1 3.0590 -3.4662 -1.6405 40 1 3.4405 -2.0941 -2.8122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292311971.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:19 Heat of formation + Delta-G solvation = 180.364058 kcal Electronic energy + Delta-G solvation = -22341.495047 eV Core-core repulsion = 19196.283380 eV Total energy + Delta-G solvation = -3145.211667 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.97018 -38.13924 -37.95746 -33.75106 -33.49590 -32.89564 -31.56698 -29.67927 -27.36266 -25.19047 -24.47142 -24.34217 -22.95844 -22.19493 -21.14096 -20.51643 -18.83374 -17.78975 -16.89974 -16.37462 -15.53382 -15.26277 -15.22219 -14.79976 -14.36290 -13.74457 -13.61962 -13.19390 -12.67593 -12.38129 -12.23366 -12.13363 -12.01786 -11.99435 -11.80094 -11.48383 -11.24534 -11.01856 -10.99090 -10.79056 -10.72724 -10.59801 -10.43276 -10.25042 -9.96593 -9.71655 -9.28803 -8.83043 -8.44280 -7.40313 -6.05766 -4.05799 1.35824 1.93518 2.53330 2.76273 3.18084 3.33074 3.37063 3.41078 3.93041 4.12951 4.24379 4.34790 4.38943 4.52911 4.97645 5.11068 5.16214 5.30426 5.33057 5.36487 5.45132 5.52763 5.60410 5.64716 5.70063 5.83543 5.94474 6.06772 6.15107 6.31104 6.35718 6.54527 6.59712 7.02931 7.13234 7.20361 7.32125 7.73654 7.95448 8.07633 8.44351 8.88112 9.01010 9.57996 11.04987 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.024246 B = 0.005163 C = 0.004894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.538306 B = 5421.458841 C = 5719.691211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.188 4.188 3 C 0.091 3.909 4 N -0.508 5.508 5 C 0.190 3.810 6 C -0.503 4.503 7 H 0.063 0.937 8 C 0.059 3.941 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.275 1.275 14 C 0.162 3.838 15 H 0.055 0.945 16 C -0.143 4.143 17 C 0.214 3.786 18 N -0.277 5.277 19 N -0.084 5.084 20 N -0.112 5.112 21 N -0.286 5.286 22 C 0.051 3.949 23 C -0.155 4.155 24 C -0.164 4.164 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.054 0.946 30 H 0.005 0.995 31 H 0.036 0.964 32 H 0.261 0.739 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.158 0.842 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.654 -12.135 -8.901 16.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.208 4.208 3 C -0.037 4.037 4 N -0.232 5.232 5 C 0.066 3.934 6 C -0.542 4.542 7 H 0.081 0.919 8 C -0.142 4.142 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.201 1.201 14 C 0.049 3.951 15 H 0.072 0.928 16 C -0.201 4.201 17 C -0.064 4.064 18 N -0.125 5.125 19 N -0.078 5.078 20 N -0.097 5.097 21 N -0.087 5.087 22 C -0.053 4.053 23 C -0.192 4.192 24 C -0.202 4.202 25 H 0.118 0.882 26 H 0.104 0.896 27 H 0.108 0.892 28 H 0.112 0.888 29 H 0.072 0.928 30 H 0.023 0.977 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.175 0.825 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.527 -10.946 -9.755 16.049 hybrid contribution -1.543 -0.685 0.876 1.902 sum 4.984 -11.631 -8.879 15.458 Atomic orbital electron populations 1.23724 0.95910 1.01347 0.99630 1.23501 0.96867 0.99321 1.01123 1.21264 0.94597 0.94829 0.93031 1.62467 1.15169 1.40518 1.05033 1.19907 0.92195 0.97435 0.83907 1.21039 1.22062 1.01578 1.09521 0.91855 1.24913 0.96990 0.96486 0.95842 1.69930 1.38172 1.31857 1.13875 0.86598 0.80110 0.83628 0.77331 1.20332 1.21435 1.20093 1.20053 0.93330 0.96066 0.85607 0.92753 1.21919 0.97843 1.02648 0.97725 1.26248 1.00060 0.82891 0.97209 1.75171 1.12051 1.22201 1.03078 1.78627 1.15906 1.02560 1.10702 1.78723 1.14088 1.06445 1.10415 1.47850 1.37322 1.09508 1.13985 1.22287 1.08656 0.75034 0.99337 1.23426 0.96784 0.98542 1.00498 1.23524 0.94351 1.02500 0.99823 0.88198 0.89564 0.89177 0.88848 0.92792 0.97704 0.94621 0.92917 0.89691 0.90602 0.93231 0.82500 0.86632 0.86512 0.86362 0.87481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 14.32 29.02 0.42 -2.40 16 2 C -0.19 -3.24 7.53 -36.02 -0.27 -3.51 16 3 C 0.09 1.77 5.33 -4.97 -0.03 1.74 16 4 N -0.51 -10.39 4.56 -230.92 -1.05 -11.45 16 5 C 0.19 4.52 4.37 -4.98 -0.02 4.50 16 6 C -0.50 -13.44 8.39 -34.44 -0.29 -13.73 16 7 H 0.06 1.72 7.34 -52.48 -0.39 1.33 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -25.42 13.29 55.43 0.74 -24.68 16 10 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 C 0.16 2.72 2.08 -68.87 -0.14 2.58 16 15 H 0.05 0.83 5.75 -51.93 -0.30 0.53 16 16 C -0.14 -2.25 8.97 37.15 0.33 -1.91 16 17 C 0.21 3.58 5.34 -155.43 -0.83 2.75 16 18 N -0.28 -5.36 12.05 32.70 0.39 -4.96 16 19 N -0.08 -1.58 13.43 60.35 0.81 -0.77 16 20 N -0.11 -1.81 12.69 60.35 0.77 -1.04 16 21 N -0.29 -4.08 3.67 -51.81 -0.19 -4.27 16 22 C 0.05 0.49 6.43 -67.93 -0.44 0.05 16 23 C -0.15 -1.11 10.16 -26.69 -0.27 -1.38 16 24 C -0.16 -1.28 10.46 -26.69 -0.28 -1.55 16 25 H 0.10 1.76 7.84 -52.49 -0.41 1.34 16 26 H 0.09 1.25 8.06 -52.49 -0.42 0.83 16 27 H 0.09 1.38 6.94 -52.48 -0.36 1.02 16 28 H 0.09 1.99 6.59 -51.93 -0.34 1.64 16 29 H 0.05 1.05 6.67 -51.93 -0.35 0.70 16 30 H 0.01 0.13 6.95 -51.93 -0.36 -0.23 16 31 H 0.04 0.89 5.81 -51.93 -0.30 0.59 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.08 1.40 6.19 -51.93 -0.32 1.08 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.16 1.21 7.60 -51.93 -0.39 0.82 16 37 H 0.12 0.97 7.85 -51.93 -0.41 0.56 16 38 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 331.97 15.07 5.00 5.00 Total: -1.00 -30.89 331.97 -6.08 -36.97 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -5.60 Total: 0.41 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -1.92 Total: -11.36 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: 1.46 Total: -47.17 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.89 -6.08 -36.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292311971.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.329 kcal (2) G-P(sol) polarization free energy of solvation -30.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds