Wall clock time and date at job start Mon Mar 30 2020 01:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46507 * 119.99475 * 2 1 4 4 C 1.38995 * 120.00018 * 180.02562 * 2 1 3 5 5 C 1.39135 * 119.70959 * 4.97521 * 4 2 1 6 6 C 1.38292 * 119.09875 * 180.02562 * 5 4 2 7 7 C 1.38883 * 118.50826 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.33913 * 180.02562 * 7 6 5 9 9 N 1.46494 * 109.47478 * 90.00369 * 8 7 6 10 10 C 1.34771 * 120.00517 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99730 * 0.02562 * 10 9 8 12 12 C 1.50704 * 120.00132 * 180.02562 * 10 9 8 13 13 C 1.53005 * 109.46995 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.46801 * 179.97438 * 13 12 10 15 15 H 1.07999 * 120.00159 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99788 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99903 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00163 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47191 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46796 * 120.00252 * 18 16 14 21 21 H 1.48493 * 109.47791 * 240.00539 * 18 16 14 22 22 C 1.38019 * 119.32637 * 0.03298 * 7 6 5 23 23 N 1.31974 * 120.86189 * 359.96725 * 22 7 6 24 24 H 1.09000 * 109.46764 * 269.99471 * 1 2 3 25 25 H 1.09005 * 109.47418 * 29.99927 * 1 2 3 26 26 H 1.09005 * 109.47036 * 149.99820 * 1 2 3 27 27 H 1.08999 * 109.46935 * 270.00038 * 3 2 1 28 28 H 1.08992 * 109.46986 * 30.00182 * 3 2 1 29 29 H 1.09003 * 109.46314 * 150.00384 * 3 2 1 30 30 H 1.07998 * 120.45129 * 359.97438 * 5 4 2 31 31 H 1.07997 * 120.74950 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.47148 * 210.00539 * 8 7 6 33 33 H 1.09004 * 109.47290 * 330.00212 * 8 7 6 34 34 H 0.97009 * 119.99887 * 0.02562 * 9 8 7 35 35 H 1.09007 * 109.46908 * 299.99816 * 12 10 9 36 36 H 1.08992 * 109.47117 * 59.99873 * 12 10 9 37 37 H 1.08998 * 109.47027 * 299.99926 * 13 12 10 38 38 H 1.09002 * 109.46778 * 59.99743 * 13 12 10 39 39 H 0.97006 * 120.00143 * 179.97438 * 17 16 14 40 40 H 1.08003 * 119.57170 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2689 0.0000 4 6 2.1600 -1.2037 -0.0005 5 6 1.4622 -2.4028 -0.1059 6 6 2.1663 -3.5931 -0.1046 7 6 3.5502 -3.5445 0.0019 8 6 4.3584 -4.8164 0.0069 9 7 4.7241 -5.1680 -1.3674 10 6 5.4528 -6.2759 -1.6084 11 8 5.8054 -6.9819 -0.6876 12 6 5.8294 -6.6373 -3.0222 13 6 6.6499 -7.9287 -3.0171 14 6 7.0260 -8.2904 -4.4309 15 1 6.7117 -7.6618 -5.2510 16 6 7.7723 -9.4232 -4.6774 17 7 8.1554 -10.1884 -3.6787 18 14 8.2379 -9.8720 -6.4298 19 1 7.6883 -8.8565 -7.3636 20 1 9.7173 -9.9095 -6.5547 21 1 7.6790 -11.2064 -6.7644 22 6 4.1778 -2.3194 0.1032 23 7 3.4803 -1.1990 0.0994 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 2.3791 1.5835 -1.0277 28 1 1.6083 2.0284 0.5138 29 1 3.1499 1.1384 0.5138 30 1 0.3852 -2.4041 -0.1867 31 1 1.6517 -4.5391 -0.1854 32 1 5.2628 -4.6699 0.5973 33 1 3.7665 -5.6213 0.4426 34 1 4.4418 -4.6035 -2.1041 35 1 4.9251 -6.7832 -3.6131 36 1 6.4219 -5.8325 -3.4573 37 1 7.5541 -7.7824 -2.4263 38 1 6.0577 -8.7336 -2.5817 39 1 8.6802 -10.9856 -3.8521 40 1 5.2537 -2.2770 0.1866 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292635372.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:21 Heat of formation + Delta-G solvation = -23.648721 kcal Electronic energy + Delta-G solvation = -20159.384470 eV Core-core repulsion = 16973.033394 eV Total energy + Delta-G solvation = -3186.351076 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.42380 -40.49403 -37.76518 -35.86808 -35.48318 -33.49334 -32.97896 -31.74682 -29.09190 -28.43243 -27.06331 -25.07908 -24.13888 -23.33675 -21.97275 -21.16680 -18.83903 -18.43582 -17.75303 -17.52267 -17.04378 -16.47649 -16.39802 -16.22225 -15.78861 -15.38600 -15.09738 -14.65509 -14.48734 -14.30446 -14.08779 -13.95033 -13.50848 -13.41339 -13.20439 -13.01710 -12.92304 -12.82190 -12.48695 -12.39530 -11.89847 -11.61505 -11.27505 -11.15666 -10.68995 -10.59962 -10.56434 -10.39574 -10.01541 -8.49964 -8.16562 -6.30377 0.25362 0.41129 1.43049 1.44497 1.57790 1.76395 2.01364 2.34047 2.47563 2.99448 3.16328 3.54854 3.78612 4.00094 4.02777 4.12001 4.15514 4.38343 4.45708 4.50693 4.54973 4.56848 4.61146 4.78744 4.81052 4.87423 4.91934 4.99223 5.07020 5.12232 5.37886 5.47137 5.54153 5.61021 5.66410 5.87951 6.00590 6.19885 6.35232 6.64923 6.88522 7.15538 7.37956 7.40338 8.96261 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037095 B = 0.002543 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.627452 B =11008.941912 C =11279.423769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.623 5.623 3 C 0.097 3.903 4 C 0.388 3.612 5 C -0.241 4.241 6 C -0.014 4.014 7 C -0.219 4.219 8 C 0.177 3.823 9 N -0.715 5.715 10 C 0.512 3.488 11 O -0.589 6.589 12 C -0.120 4.120 13 C 0.041 3.959 14 C -0.541 4.541 15 H 0.075 0.925 16 C -0.009 4.009 17 N -0.938 5.938 18 Si 0.974 3.026 19 H -0.253 1.253 20 H -0.281 1.281 21 H -0.280 1.280 22 C 0.162 3.838 23 N -0.565 5.565 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.157 0.843 31 H 0.150 0.850 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.413 0.587 35 H 0.103 0.897 36 H 0.102 0.898 37 H -0.017 1.017 38 H -0.017 1.017 39 H 0.263 0.737 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.840 24.521 6.299 31.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.337 5.337 3 C -0.046 4.046 4 C 0.153 3.847 5 C -0.265 4.265 6 C -0.040 4.040 7 C -0.224 4.224 8 C 0.054 3.946 9 N -0.368 5.368 10 C 0.300 3.700 11 O -0.469 6.469 12 C -0.159 4.159 13 C 0.004 3.996 14 C -0.579 4.579 15 H 0.093 0.907 16 C -0.206 4.206 17 N -0.578 5.578 18 Si 0.798 3.202 19 H -0.177 1.177 20 H -0.207 1.207 21 H -0.206 1.206 22 C 0.004 3.996 23 N -0.283 5.283 24 H 0.078 0.922 25 H 0.108 0.892 26 H 0.098 0.902 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.081 0.919 30 H 0.175 0.825 31 H 0.168 0.832 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.249 0.751 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.001 0.999 38 H 0.002 0.998 39 H 0.071 0.929 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -18.216 24.895 7.078 31.649 hybrid contribution 0.129 -1.200 -0.749 1.420 sum -18.087 23.695 6.328 30.473 Atomic orbital electron populations 1.21940 0.76577 1.04398 1.02460 1.46530 1.06377 1.02785 1.77978 1.21614 0.97461 0.84054 1.01440 1.18765 0.88558 0.87152 0.90228 1.21659 1.02217 0.90959 1.11661 1.21498 0.92810 0.98987 0.90748 1.20371 0.94938 0.94993 1.12132 1.19877 0.97928 0.93394 0.83438 1.46066 1.54937 1.26086 1.09712 1.21295 0.76647 0.79976 0.92035 1.90657 1.55729 1.52653 1.47837 1.21636 1.02271 1.00130 0.91909 1.18701 0.93558 0.91845 0.95544 1.21751 1.33420 1.09137 0.93616 0.90676 1.26145 0.95923 0.96387 1.02124 1.70186 1.38358 1.15642 1.33600 0.85268 0.77800 0.78339 0.78791 1.17670 1.20652 1.20594 1.22516 1.00045 0.86204 0.90794 1.67233 1.07057 1.31898 1.22081 0.92160 0.89228 0.90230 0.93395 0.89609 0.91861 0.82547 0.83247 0.91618 0.91514 0.75107 0.87841 0.87943 0.99896 0.99842 0.92873 0.82033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 10.28 127.77 1.31 1.95 16 2 N -0.62 -9.04 3.39 -753.95 -2.56 -11.60 16 3 C 0.10 1.21 10.50 127.77 1.34 2.55 16 4 C 0.39 7.44 7.37 133.06 0.98 8.42 16 5 C -0.24 -3.85 9.27 22.50 0.21 -3.64 16 6 C -0.01 -0.25 9.85 22.44 0.22 -0.03 16 7 C -0.22 -4.40 5.27 -19.76 -0.10 -4.51 16 8 C 0.18 4.36 5.82 85.63 0.50 4.86 16 9 N -0.71 -19.59 5.55 -466.81 -2.59 -22.18 16 10 C 0.51 19.94 7.83 87.66 0.69 20.62 16 11 O -0.59 -29.07 15.98 -3.03 -0.05 -29.12 16 12 C -0.12 -4.86 5.64 29.85 0.17 -4.69 16 13 C 0.04 2.32 4.26 29.85 0.13 2.45 16 14 C -0.54 -31.15 9.11 25.60 0.23 -30.92 16 15 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 16 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 17 N -0.94 -60.04 13.29 21.45 0.28 -59.75 16 18 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 19 H -0.25 -10.73 7.11 99.48 0.71 -10.02 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 C 0.16 3.40 10.85 84.62 0.92 4.32 16 23 N -0.56 -12.59 9.08 -193.27 -1.75 -14.34 16 24 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 25 H 0.09 0.33 8.07 -2.38 -0.02 0.31 16 26 H 0.08 0.45 5.98 -2.38 -0.01 0.44 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.09 0.64 8.07 -2.39 -0.02 0.62 16 29 H 0.06 1.02 7.30 -2.39 -0.02 1.00 16 30 H 0.16 1.65 6.03 -2.91 -0.02 1.63 16 31 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 32 H 0.07 1.73 8.09 -2.39 -0.02 1.71 16 33 H 0.07 1.73 8.09 -2.38 -0.02 1.71 16 34 H 0.41 8.92 8.46 -92.70 -0.78 8.14 16 35 H 0.10 3.69 8.14 -2.38 -0.02 3.67 16 36 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 37 H -0.02 -1.11 8.10 -2.39 -0.02 -1.13 16 38 H -0.02 -1.07 8.10 -2.39 -0.02 -1.09 16 39 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 40 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -79.96 340.67 2.67 -77.29 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.25 Total: 11.61 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 7.05 Total: 1.35 kcal Atomic # 7 Polarization: -101.26 SS G_CDS: -6.62 Total: -107.88 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.05 Total: -29.12 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -79.96 2.67 -77.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292635372.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.638 kcal (2) G-P(sol) polarization free energy of solvation -79.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds