Wall clock time and date at job start Mon Mar 30 2020 01:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 114.00139 * 2 1 4 4 C 1.53001 * 109.47414 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.47112 * 64.99516 * 4 3 2 6 6 C 1.36931 * 120.00333 * 264.84758 * 5 4 3 7 7 H 1.08005 * 119.99985 * 146.19854 * 6 5 4 8 8 C 1.38812 * 120.00131 * 326.20550 * 6 5 4 9 9 N 1.31624 * 119.99752 * 337.53992 * 8 6 5 10 10 Si 1.86795 * 120.00391 * 157.54746 * 8 6 5 11 11 H 1.48505 * 109.47139 * 59.99677 * 10 8 6 12 12 H 1.48494 * 109.47348 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47164 * 299.99821 * 10 8 6 14 14 C 1.46507 * 119.99391 * 84.85116 * 5 4 3 15 15 C 1.52996 * 109.47085 * 89.99967 * 14 5 4 16 16 H 1.09002 * 109.47436 * 54.99832 * 15 14 5 17 17 C 1.52995 * 109.47065 * 174.99468 * 15 14 5 18 18 C 1.52998 * 109.47432 * 179.97438 * 17 15 14 19 19 C 1.53004 * 109.47250 * 300.00256 * 18 17 15 20 20 C 1.53007 * 109.46826 * 59.99379 * 19 18 17 21 21 F 1.39902 * 109.46823 * 60.00795 * 20 19 18 22 22 F 1.39898 * 109.46859 * 180.02562 * 20 19 18 23 23 C 1.52996 * 109.47347 * 300.00338 * 20 19 18 24 24 H 1.09002 * 109.47136 * 59.99857 * 1 2 3 25 25 H 1.09004 * 109.47151 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47111 * 300.00107 * 1 2 3 27 27 H 1.08997 * 109.47155 * 60.00121 * 3 2 1 28 28 H 1.09000 * 109.47166 * 299.99931 * 3 2 1 29 29 H 1.08999 * 109.46906 * 305.00070 * 4 3 2 30 30 H 1.08997 * 109.47138 * 184.99997 * 4 3 2 31 31 H 0.96996 * 119.99600 * 179.97438 * 9 8 6 32 32 H 1.09003 * 109.46569 * 209.99836 * 14 5 4 33 33 H 1.08999 * 109.46762 * 329.99507 * 14 5 4 34 34 H 1.08999 * 109.47342 * 300.00186 * 17 15 14 35 35 H 1.09006 * 109.47176 * 59.99846 * 17 15 14 36 36 H 1.08993 * 109.47178 * 60.00047 * 18 17 15 37 37 H 1.09001 * 109.47703 * 180.02562 * 18 17 15 38 38 H 1.08998 * 109.47560 * 179.97438 * 19 18 17 39 39 H 1.09002 * 109.46989 * 300.00157 * 19 18 17 40 40 H 1.09002 * 109.46950 * 299.99602 * 23 20 19 41 41 H 1.09000 * 109.46871 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1984 -0.7856 -1.3068 7 1 3.9867 -1.3320 -2.2140 8 6 4.6962 -1.4520 -0.1954 9 7 5.3589 -0.7880 0.7279 10 14 4.4259 -3.2910 -0.0102 11 1 5.0428 -4.0002 -1.1599 12 1 5.0515 -3.7586 1.2527 13 1 2.9689 -3.5762 0.0233 14 6 4.1776 1.3885 -2.4471 15 6 5.6236 1.8872 -2.4840 16 1 6.3029 1.0369 -2.4228 17 6 5.8692 2.6428 -3.7915 18 6 7.3149 3.1421 -3.8283 19 6 7.5613 4.0788 -2.6438 20 6 7.3157 3.3230 -1.3363 21 9 8.1880 2.2321 -1.2573 22 9 7.5404 4.1796 -0.2533 23 6 5.8699 2.8238 -1.2996 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8514 0.5683 0.8409 30 1 3.9785 2.1765 0.0889 31 1 5.7064 -1.2535 1.5046 32 1 3.9757 0.7933 -3.3376 33 1 3.4996 2.2415 -2.4187 34 1 5.6932 1.9757 -4.6353 35 1 5.1899 3.4931 -3.8528 36 1 7.9945 2.2922 -3.7667 37 1 7.4898 3.6808 -4.7595 38 1 8.5915 4.4341 -2.6697 39 1 6.8817 4.9288 -2.7053 40 1 5.1904 3.6739 -1.3611 41 1 5.6949 2.2859 -0.3679 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316531818.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:08 Heat of formation + Delta-G solvation = -159.080253 kcal Electronic energy + Delta-G solvation = -23596.574081 eV Core-core repulsion = 19953.661067 eV Total energy + Delta-G solvation = -3642.913014 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.85470 -47.87362 -39.46785 -38.47361 -36.69253 -33.63991 -32.06846 -30.98664 -30.10270 -27.14799 -27.05521 -24.98761 -23.48954 -22.88347 -21.55940 -20.72572 -18.62280 -18.08169 -17.58846 -17.29051 -17.14629 -16.68411 -16.47742 -15.94826 -15.56091 -15.44966 -15.10032 -14.85101 -14.62767 -14.21926 -14.00997 -13.66837 -13.55060 -13.36651 -13.33337 -13.06837 -12.74409 -12.65280 -12.38969 -12.38009 -12.24874 -12.06324 -11.84213 -11.74441 -11.49415 -11.37017 -11.29457 -10.90433 -10.38762 -10.31067 -8.46673 -7.72401 -5.23784 1.45694 1.50170 1.56122 2.59571 2.94247 3.21906 3.31531 3.40587 3.51958 3.54960 3.73665 4.13352 4.22318 4.34580 4.39453 4.42947 4.47315 4.55010 4.62605 4.66624 4.75290 4.78538 4.81391 4.86024 4.92388 4.98651 5.01346 5.08225 5.17390 5.19161 5.26016 5.36143 5.55454 5.69206 5.76090 5.88586 6.49819 6.68545 7.28866 8.01090 8.47721 9.25513 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.017466 B = 0.006459 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.691486 B = 4333.922968 C = 4906.361835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.052 3.948 4 C 0.137 3.863 5 N -0.587 5.587 6 C -0.235 4.235 7 H 0.048 0.952 8 C -0.033 4.033 9 N -0.916 5.916 10 Si 0.943 3.057 11 H -0.280 1.280 12 H -0.299 1.299 13 H -0.286 1.286 14 C 0.152 3.848 15 C -0.094 4.094 16 H 0.035 0.965 17 C -0.111 4.111 18 C -0.113 4.113 19 C -0.144 4.144 20 C 0.273 3.727 21 F -0.221 7.221 22 F -0.220 7.220 23 C -0.141 4.141 24 H 0.045 0.955 25 H 0.080 0.920 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.244 0.756 32 H 0.045 0.955 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.103 0.897 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.424 11.999 -7.935 14.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C -0.026 4.026 4 C 0.010 3.990 5 N -0.307 5.307 6 C -0.365 4.365 7 H 0.066 0.934 8 C -0.229 4.229 9 N -0.562 5.562 10 Si 0.773 3.227 11 H -0.206 1.206 12 H -0.226 1.226 13 H -0.213 1.213 14 C 0.026 3.974 15 C -0.115 4.115 16 H 0.054 0.946 17 C -0.149 4.149 18 C -0.151 4.151 19 C -0.182 4.182 20 C 0.238 3.762 21 F -0.203 7.203 22 F -0.201 7.201 23 C -0.179 4.179 24 H 0.064 0.936 25 H 0.099 0.901 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.124 0.876 38 H 0.109 0.891 39 H 0.135 0.865 40 H 0.122 0.878 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.214 11.761 -7.774 14.271 hybrid contribution 0.026 -1.252 0.977 1.588 sum -2.188 10.509 -6.797 12.705 Atomic orbital electron populations 1.22817 0.81555 1.02552 1.00113 1.88135 1.19673 1.28955 1.95200 1.23288 0.96984 0.83901 0.98473 1.21076 0.89354 0.96656 0.91900 1.43847 1.75916 1.03643 1.07309 1.18964 1.34438 0.84450 0.98689 0.93432 1.25448 0.97746 1.00223 0.99501 1.70085 1.37447 1.36108 1.12556 0.85722 0.77489 0.83082 0.76401 1.20577 1.22571 1.21262 1.21056 0.92849 0.93800 0.89654 1.21594 1.00030 0.96309 0.93581 0.94619 1.21626 0.96703 1.00411 0.96125 1.21505 0.97082 0.98617 0.97882 1.22517 1.05274 0.99682 0.90724 1.21739 0.90114 0.78168 0.86222 1.92954 1.72736 1.57658 1.96922 1.92934 1.95893 1.71418 1.59826 1.22512 0.92444 1.01067 1.01897 0.93636 0.90131 0.93586 0.93714 0.93847 0.91483 0.92772 0.94695 0.93671 0.92183 0.90908 0.89435 0.93213 0.87636 0.89101 0.86512 0.87847 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.40 -17.40 10.42 -148.98 -1.55 -18.95 16 3 C 0.05 2.03 6.28 71.98 0.45 2.48 16 4 C 0.14 6.26 4.87 86.38 0.42 6.68 16 5 N -0.59 -28.00 2.24 -701.98 -1.57 -29.57 16 6 C -0.23 -12.92 9.26 84.03 0.78 -12.14 16 7 H 0.05 2.66 7.92 -2.91 -0.02 2.64 16 8 C -0.03 -1.89 4.92 84.86 0.42 -1.47 16 9 N -0.92 -55.00 11.34 21.65 0.25 -54.76 16 10 Si 0.94 47.38 29.61 68.60 2.03 49.42 16 11 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 12 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 13 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 14 C 0.15 5.76 5.17 86.38 0.45 6.20 16 15 C -0.09 -3.30 2.27 -10.80 -0.02 -3.32 16 16 H 0.04 1.60 7.80 -2.39 -0.02 1.58 16 17 C -0.11 -2.67 5.20 30.59 0.16 -2.51 16 18 C -0.11 -2.47 5.80 30.59 0.18 -2.30 16 19 C -0.14 -3.28 5.45 30.60 0.17 -3.12 16 20 C 0.27 9.14 2.10 30.60 0.06 9.21 16 21 F -0.22 -9.18 16.03 44.97 0.72 -8.46 16 22 F -0.22 -7.73 17.06 44.97 0.77 -6.96 16 23 C -0.14 -4.95 3.75 30.59 0.11 -4.84 16 24 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 26 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 3.71 5.34 -2.39 -0.01 3.70 16 30 H 0.05 2.29 5.76 -2.39 -0.01 2.27 16 31 H 0.24 14.51 8.31 -92.71 -0.77 13.74 16 32 H 0.04 1.71 8.04 -2.39 -0.02 1.69 16 33 H 0.06 1.94 8.07 -2.39 -0.02 1.92 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.05 1.31 7.80 -2.39 -0.02 1.29 16 37 H 0.11 1.59 8.14 -2.39 -0.02 1.58 16 38 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 41 H 0.06 2.79 5.79 -2.39 -0.01 2.77 16 Total: -1.00 -68.29 328.51 6.06 -62.23 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 1.00 Total: 10.11 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 4.42 Total: -3.05 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -1.32 Total: -84.33 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -1.55 Total: -18.95 kcal Atomic # 9 Polarization: -16.91 SS G_CDS: 1.49 Total: -15.42 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.42 kcal Total: -68.29 6.06 -62.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316531818.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.849 kcal (2) G-P(sol) polarization free energy of solvation -68.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds